Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38265 * 119.95640 * 2 1 4 4 C 1.38483 * 120.10565 * 179.74567 * 3 2 1 5 5 F 1.35101 * 119.98798 * 179.97438 * 4 3 2 6 6 C 1.38365 * 120.01501 * 0.02562 * 4 3 2 7 7 C 1.38764 * 119.91120 * 359.97438 * 6 4 3 8 8 N 1.40224 * 120.05484 * 179.97438 * 7 6 4 9 9 C 1.35044 * 126.60288 * 4.70860 * 8 7 6 10 10 C 1.36691 * 106.79209 * 179.84936 * 9 8 7 11 11 C 1.47364 * 125.77781 * 180.15909 * 10 9 8 12 12 O 1.21520 * 120.00286 * 0.28107 * 11 10 9 13 13 O 1.34756 * 119.99751 * 180.28280 * 11 10 9 14 14 C 1.45199 * 117.00036 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47589 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47553 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00108 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47558 * 90.00057 * 20 18 16 22 22 H 1.48503 * 109.46984 * 209.99952 * 20 18 16 23 23 H 1.48504 * 109.47004 * 329.99962 * 20 18 16 24 24 N 1.34460 * 108.44305 * 0.42429 * 10 9 8 25 25 N 1.28757 * 109.56567 * 359.73665 * 24 10 9 26 26 C 1.38112 * 119.95168 * 179.72439 * 2 1 3 27 27 H 1.09002 * 109.47359 * 90.00254 * 1 2 3 28 28 H 1.09004 * 109.47247 * 210.00026 * 1 2 3 29 29 H 1.09001 * 109.47583 * 330.00145 * 1 2 3 30 30 H 1.08002 * 119.94331 * 359.72347 * 3 2 1 31 31 H 1.08001 * 120.04070 * 179.97438 * 6 4 3 32 32 H 1.08003 * 126.60133 * 359.96642 * 9 8 7 33 33 H 1.08997 * 109.47580 * 300.00233 * 14 13 11 34 34 H 1.09003 * 109.47333 * 60.00346 * 14 13 11 35 35 H 1.09010 * 109.47097 * 300.00564 * 15 14 13 36 36 H 1.09007 * 109.46897 * 59.99616 * 15 14 13 37 37 H 0.96999 * 119.99909 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.01072 * 0.29740 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5821 1.2015 0.0053 5 9 4.2544 2.3735 0.0048 6 6 4.2774 0.0053 0.0101 7 6 3.5852 -1.1974 0.0101 8 7 4.2867 -2.4115 0.0144 9 6 5.6248 -2.5680 0.1078 10 6 5.8683 -3.9127 0.0763 11 6 7.1946 -4.5501 0.1545 12 8 8.1926 -3.8651 0.2619 13 8 7.3008 -5.8926 0.1067 14 6 8.6384 -6.4515 0.1885 15 6 8.5587 -7.9778 0.1191 16 6 9.9470 -8.5578 0.2046 17 1 10.8009 -7.9032 0.2985 18 6 10.1271 -9.9241 0.1618 19 7 11.3387 -10.4302 0.2358 20 14 8.6503 -11.0562 -0.0014 21 1 8.3685 -11.2982 -1.4392 22 1 8.9407 -12.3484 0.6703 23 1 7.4678 -10.4222 0.6350 24 7 4.6932 -4.5550 -0.0439 25 7 3.7345 -3.6965 -0.0836 26 6 2.1965 -1.1967 0.0058 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6557 2.1323 -0.0045 31 1 5.3574 0.0076 0.0138 32 1 6.3607 -1.7820 0.1930 33 1 9.2386 -6.0805 -0.6423 34 1 9.0993 -6.1546 1.1306 35 1 7.9586 -8.3484 0.9502 36 1 8.0976 -8.2751 -0.8228 37 1 11.4655 -11.3914 0.2061 38 1 1.6559 -2.1316 0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789058163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = -7.437354 kcal Electronic energy + Delta-G solvation = -24480.090482 eV Core-core repulsion = 20432.703033 eV Total energy + Delta-G solvation = -4047.387449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.57883 -42.85701 -40.12385 -39.70031 -36.28377 -35.54070 -33.29753 -32.84255 -31.73408 -30.85083 -30.25000 -27.92626 -25.86547 -24.93819 -24.06581 -22.70345 -21.71497 -20.90507 -20.58751 -19.04231 -17.53822 -17.15418 -17.00471 -16.86334 -16.77286 -16.32371 -16.27144 -15.95037 -15.76142 -15.26727 -14.30813 -14.18377 -14.16417 -14.02415 -13.54191 -13.40777 -13.04460 -12.91522 -12.63666 -12.53076 -12.33541 -12.11755 -11.69674 -11.56212 -11.42006 -11.28123 -10.79717 -10.68484 -10.11032 -9.98195 -9.90915 -9.69404 -9.51122 -9.32772 -9.16522 -8.59536 -6.10624 -4.11807 -0.23399 0.33493 1.06549 1.34635 1.35454 2.75199 2.80986 2.98638 3.31934 3.39038 3.42119 3.45281 3.65947 3.83613 4.13618 4.15033 4.30805 4.40866 4.42070 4.45943 4.58281 4.67377 4.83749 4.97028 5.15463 5.23301 5.23744 5.33778 5.41495 5.54086 5.61239 5.81517 5.92089 5.96676 6.16519 6.45065 6.65563 7.16943 7.24853 7.46896 7.64602 7.99300 8.41450 8.90661 9.49126 11.01727 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.002113 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.540291 B =13249.301170 C =14157.587913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.152 4.152 4 C 0.133 3.867 5 F -0.127 7.127 6 C -0.172 4.172 7 C 0.174 3.826 8 N -0.318 5.318 9 C 0.100 3.900 10 C -0.066 4.066 11 C 0.549 3.451 12 O -0.506 6.506 13 O -0.339 6.339 14 C 0.082 3.918 15 C -0.010 4.010 16 C -0.527 4.527 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.262 1.262 24 N -0.163 5.163 25 N -0.051 5.051 26 C -0.116 4.116 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.213 0.787 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.318 26.979 -0.508 35.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.033 4.033 3 C -0.171 4.171 4 C 0.113 3.887 5 F -0.106 7.106 6 C -0.193 4.193 7 C 0.082 3.918 8 N -0.096 5.096 9 C -0.053 4.053 10 C -0.201 4.201 11 C 0.391 3.609 12 O -0.394 6.394 13 O -0.253 6.253 14 C 0.010 3.990 15 C -0.048 4.048 16 C -0.565 4.565 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.707 3.293 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 N -0.038 5.038 25 N -0.030 5.030 26 C -0.136 4.136 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.081 26.129 -0.600 35.539 hybrid contribution 0.670 0.204 -0.008 0.700 sum -23.412 26.333 -0.608 35.241 Atomic orbital electron populations 1.20887 0.89132 1.03971 1.03498 1.19655 0.97083 0.90986 0.95608 1.21218 0.92089 0.99910 1.03912 1.17145 0.89828 0.80742 1.01021 1.91569 1.80401 1.45009 1.93590 1.20792 1.01680 0.89707 1.07140 1.17125 0.91365 0.81020 1.02291 1.47608 1.05360 1.07501 1.49159 1.23366 0.85818 0.98798 0.97271 1.20505 0.92764 0.90060 1.16806 1.19271 0.85892 0.82382 0.73371 1.90872 1.37149 1.64922 1.46474 1.86640 1.37302 1.19647 1.81734 1.23521 0.77291 0.96230 1.01988 1.19643 0.98941 0.88050 0.98126 1.20824 0.91066 0.92615 1.51975 0.90598 1.24930 0.95917 0.98022 0.94136 1.69895 1.20948 1.12646 1.50021 0.86760 0.83592 0.80125 0.78834 1.20037 1.21203 1.18597 1.74879 0.97293 1.24302 1.07368 1.82182 1.17125 0.81532 1.22185 1.20936 0.91016 1.00003 1.01683 0.89962 0.90393 0.90557 0.83629 0.83288 0.77043 0.91335 0.91311 0.95182 0.95615 0.92450 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.29 10.01 36.00 0.36 0.07 16 2 C -0.03 -0.16 5.88 -104.66 -0.61 -0.77 16 3 C -0.15 -0.73 9.68 -39.48 -0.38 -1.11 16 4 C 0.13 0.83 7.30 -39.44 -0.29 0.54 16 5 F -0.13 -0.91 17.27 2.25 0.04 -0.87 16 6 C -0.17 -1.13 9.45 -39.34 -0.37 -1.50 16 7 C 0.17 1.39 6.69 -83.59 -0.56 0.83 16 8 N -0.32 -3.33 3.82 -10.42 -0.04 -3.37 16 9 C 0.10 1.06 10.60 -16.70 -0.18 0.88 16 10 C -0.07 -0.96 7.02 -83.56 -0.59 -1.55 16 11 C 0.55 9.61 7.96 34.44 0.27 9.88 16 12 O -0.51 -9.32 16.65 -19.28 -0.32 -9.64 16 13 O -0.34 -6.76 10.23 -40.64 -0.42 -7.18 16 14 C 0.08 1.76 5.41 37.16 0.20 1.97 16 15 C -0.01 -0.25 4.42 -27.89 -0.12 -0.37 16 16 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 20 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 N -0.16 -2.54 12.39 32.84 0.41 -2.13 16 25 N -0.05 -0.67 13.13 60.35 0.79 0.12 16 26 C -0.12 -0.77 9.33 -39.39 -0.37 -1.14 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 29 H 0.08 0.10 8.08 -51.93 -0.42 -0.32 16 30 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 31 H 0.15 0.74 6.83 -52.49 -0.36 0.38 16 32 H 0.21 1.46 7.15 -52.48 -0.38 1.08 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.74 7.20 -51.92 -0.37 0.36 16 36 H 0.03 0.62 7.57 -51.92 -0.39 0.23 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.15 0.97 7.73 -52.49 -0.41 0.57 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -33.58 345.95 -5.31 -38.89 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -4.02 Total: -5.78 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.06 Total: -5.64 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 1.93 Total: -32.09 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.74 Total: -16.82 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.58 -5.31 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789058163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds