Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.95135 * 2 1 4 4 C 1.38486 * 120.10538 * 179.97438 * 3 2 1 5 5 F 1.35106 * 119.99031 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.01520 * 0.02562 * 4 3 2 7 7 C 1.38769 * 119.90955 * 0.02562 * 6 4 3 8 8 N 1.40220 * 120.05430 * 179.97438 * 7 6 4 9 9 C 1.35051 * 126.60117 * 4.99526 * 8 7 6 10 10 C 1.36689 * 106.78595 * 179.97438 * 9 8 7 11 11 C 1.47376 * 125.77433 * 179.97438 * 10 9 8 12 12 O 1.21512 * 120.00223 * 359.97438 * 11 10 9 13 13 O 1.34754 * 120.00015 * 179.97438 * 11 10 9 14 14 C 1.45198 * 117.00242 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46941 * 329.99898 * 14 13 11 16 16 C 1.52994 * 109.47073 * 90.00047 * 14 13 11 17 17 C 1.50697 * 109.47183 * 210.00380 * 14 13 11 18 18 H 1.08001 * 120.00237 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99886 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00256 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99825 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47031 * 90.00381 * 21 19 17 23 23 H 1.48510 * 109.46813 * 210.00141 * 21 19 17 24 24 H 1.48496 * 109.47149 * 330.00158 * 21 19 17 25 25 N 1.34458 * 108.44678 * 0.22799 * 10 9 8 26 26 N 1.28745 * 109.56823 * 359.61097 * 25 10 9 27 27 C 1.38107 * 119.95724 * 180.27027 * 2 1 3 28 28 H 1.09003 * 109.47214 * 90.00777 * 1 2 3 29 29 H 1.09004 * 109.46979 * 210.00226 * 1 2 3 30 30 H 1.08995 * 109.47304 * 330.00199 * 1 2 3 31 31 H 1.08000 * 119.95026 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.04187 * 179.97438 * 6 4 3 33 33 H 1.07995 * 126.60558 * 359.97438 * 9 8 7 34 34 H 1.08999 * 109.47301 * 299.99949 * 16 14 13 35 35 H 1.09008 * 109.47187 * 60.00357 * 16 14 13 36 36 H 1.08999 * 109.47238 * 180.02562 * 16 14 13 37 37 H 0.96998 * 120.00219 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.01152 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5821 1.2017 0.0005 5 9 4.2543 2.3737 0.0011 6 6 4.2775 0.0055 0.0005 7 6 3.5853 -1.1972 -0.0005 8 7 4.2869 -2.4113 -0.0011 9 6 5.6249 -2.5681 0.0937 10 6 5.8687 -3.9125 0.0532 11 6 7.1954 -4.5501 0.1254 12 8 8.1937 -3.8653 0.2305 13 8 7.3015 -5.8925 0.0751 14 6 8.6394 -6.4514 0.1510 15 1 9.3518 -5.7485 -0.2808 16 6 9.0017 -6.7101 1.6148 17 6 8.6863 -7.7483 -0.6149 18 1 7.7992 -8.1161 -1.1091 19 6 9.8618 -8.4655 -0.6849 20 7 10.9420 -8.0181 -0.0828 21 14 9.9197 -10.0736 -1.6338 22 1 10.2916 -9.8021 -3.0456 23 1 10.9287 -10.9742 -1.0204 24 1 8.5848 -10.7228 -1.5896 25 7 4.6937 -4.5544 -0.0695 26 7 3.7345 -3.6961 -0.0996 27 6 2.1966 -1.1965 -0.0056 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6557 2.1324 -0.0004 32 1 5.3575 0.0079 0.0005 33 1 6.3606 -1.7826 0.1842 34 1 8.9678 -5.7720 2.1688 35 1 8.2892 -7.4131 2.0466 36 1 10.0062 -7.1293 1.6719 37 1 11.7688 -8.5228 -0.1317 38 1 1.6561 -2.1316 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789426528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = -24.643157 kcal Electronic energy + Delta-G solvation = -25021.704717 eV Core-core repulsion = 20973.571168 eV Total energy + Delta-G solvation = -4048.133549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.06566 -43.76458 -41.16080 -40.44456 -37.66587 -36.24550 -35.32697 -33.31310 -32.66950 -31.71749 -30.90057 -28.25897 -27.46283 -26.11933 -25.53898 -23.60800 -23.01983 -22.24403 -21.51967 -19.87390 -18.76789 -18.32725 -17.70647 -17.64005 -17.56421 -17.37520 -16.88963 -16.81715 -16.47130 -16.38551 -16.09470 -14.98765 -14.64472 -14.61606 -14.40383 -14.28331 -14.02943 -13.71338 -13.54451 -13.23497 -13.17900 -13.00200 -12.84168 -12.81278 -12.64474 -12.48999 -12.38479 -12.16525 -12.07970 -11.77035 -11.62010 -11.01352 -10.86178 -10.59784 -9.93954 -9.76562 -8.28850 -6.44952 -0.89417 -0.10981 0.18180 0.47517 0.58385 1.41990 1.44318 1.55373 1.76031 1.83652 2.29493 2.39154 2.86662 2.91219 3.01744 3.20611 3.51770 3.60188 3.65822 3.76185 3.87666 4.05165 4.07944 4.30320 4.52815 4.57986 4.74836 4.78945 4.81639 4.83278 4.85963 4.96594 5.10075 5.10964 5.26419 5.34912 5.46670 5.60473 5.66558 5.83469 6.02057 6.46131 6.60636 6.85856 7.25531 8.79004 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.002367 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.975319 B =11824.453200 C =12452.698369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.137 4.137 4 C 0.122 3.878 5 F -0.133 7.133 6 C -0.169 4.169 7 C 0.144 3.856 8 N -0.304 5.304 9 C 0.123 3.877 10 C -0.091 4.091 11 C 0.542 3.458 12 O -0.531 6.531 13 O -0.349 6.349 14 C 0.217 3.783 15 H 0.018 0.982 16 C -0.143 4.143 17 C -0.550 4.550 18 H 0.063 0.937 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.982 3.018 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.266 1.266 25 N -0.197 5.197 26 N -0.060 5.060 27 C -0.120 4.120 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.248 0.752 34 H 0.028 0.972 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.272 0.728 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.971 21.846 0.838 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.156 4.156 4 C 0.102 3.898 5 F -0.111 7.111 6 C -0.191 4.191 7 C 0.054 3.946 8 N -0.082 5.082 9 C -0.030 4.030 10 C -0.227 4.227 11 C 0.385 3.615 12 O -0.421 6.421 13 O -0.264 6.264 14 C 0.164 3.836 15 H 0.036 0.964 16 C -0.201 4.201 17 C -0.587 4.587 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.805 3.195 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.191 1.191 25 N -0.071 5.071 26 N -0.039 5.039 27 C -0.140 4.140 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.190 0.810 32 H 0.179 0.821 33 H 0.264 0.736 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.682 21.136 0.778 30.289 hybrid contribution 1.792 -0.144 -0.235 1.813 sum -19.890 20.993 0.543 28.924 Atomic orbital electron populations 1.20974 0.87119 1.04954 1.04369 1.19914 0.98362 0.90105 0.94546 1.21548 0.91526 1.00970 1.01590 1.17270 0.90465 0.80316 1.01751 1.91560 1.80656 1.45152 1.93735 1.20928 1.02475 0.89372 1.06288 1.17397 0.91961 0.80243 1.05041 1.47708 1.05257 1.07659 1.47558 1.23762 0.86435 0.97894 0.94931 1.20355 0.91373 0.91496 1.19447 1.19791 0.87019 0.82187 0.72512 1.90790 1.38236 1.64988 1.48068 1.86632 1.37916 1.20445 1.81359 1.20509 0.75092 0.92730 0.95281 0.96433 1.22002 1.03518 0.98957 0.95585 1.21263 0.97685 1.05865 1.33903 0.91855 1.25786 0.94216 1.01845 0.96254 1.69994 1.01467 1.40516 1.43193 0.85193 0.78393 0.77567 0.78317 1.19622 1.19717 1.19073 1.74826 0.97872 1.25640 1.08783 1.82037 1.16764 0.82424 1.22683 1.21105 0.90563 1.00911 1.01375 0.89010 0.90218 0.88820 0.80981 0.82147 0.73631 0.95278 0.93822 0.89613 0.91849 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.01 71.24 0.71 0.29 16 2 C -0.03 -0.26 5.88 -19.89 -0.12 -0.37 16 3 C -0.14 -1.17 9.68 22.34 0.22 -0.95 16 4 C 0.12 1.52 7.30 22.36 0.16 1.68 16 5 F -0.13 -1.88 17.27 44.97 0.78 -1.11 16 6 C -0.17 -2.40 9.45 22.43 0.21 -2.19 16 7 C 0.14 2.56 6.69 38.08 0.25 2.81 16 8 N -0.30 -7.36 3.82 -186.88 -0.71 -8.07 16 9 C 0.12 3.17 10.60 83.84 0.89 4.05 16 10 C -0.09 -3.28 7.02 40.79 0.29 -3.00 16 11 C 0.54 24.42 7.93 70.23 0.56 24.97 16 12 O -0.53 -24.99 16.12 19.80 0.32 -24.67 16 13 O -0.35 -18.18 9.87 -56.65 -0.56 -18.74 16 14 C 0.22 12.28 2.56 29.85 0.08 12.36 16 15 H 0.02 1.10 7.16 -2.39 -0.02 1.08 16 16 C -0.14 -7.52 9.33 71.98 0.67 -6.85 16 17 C -0.55 -32.29 8.90 25.60 0.23 -32.06 16 18 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.91 -52.73 11.32 21.45 0.24 -52.49 16 21 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 N -0.20 -7.32 12.39 -50.02 -0.62 -7.94 16 26 N -0.06 -1.82 13.13 37.02 0.49 -1.33 16 27 C -0.12 -1.71 9.33 22.39 0.21 -1.50 16 28 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.29 8.09 -2.38 -0.02 0.27 16 30 H 0.09 0.04 8.08 -2.39 -0.02 0.02 16 31 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 32 H 0.16 1.80 6.83 -2.91 -0.02 1.78 16 33 H 0.25 4.22 7.15 -2.91 -0.02 4.20 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.09 4.77 6.07 -2.39 -0.01 4.76 16 37 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.15 2.16 7.73 -2.91 -0.02 2.14 16 Total: -1.00 -72.41 344.46 7.88 -64.53 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.11 Total: 3.15 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.81 Total: 0.75 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -0.60 Total: -69.83 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.24 Total: -43.41 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.41 7.88 -64.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789426528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.886 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds