Wall clock time and date at job start Tue Mar 31 2020 12:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.47204 * 113.28156 * 2 1 4 4 N 2.60800 * 113.28136 * 0.02562 * 2 1 3 5 5 C 1.53488 * 114.20581 * 133.06574 * 2 1 3 6 6 N 1.47067 * 87.98615 * 139.85288 * 5 2 1 7 7 C 1.34773 * 136.05788 * 152.84380 * 6 5 2 8 8 O 1.21596 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00298 * 180.02562 * 7 6 5 10 10 C 1.40129 * 120.00052 * 185.66284 * 9 7 6 11 11 C 1.38693 * 120.07935 * 33.99036 * 10 9 7 12 12 C 1.38201 * 120.01979 * 180.27606 * 11 10 9 13 13 C 1.38543 * 120.17521 * 359.44945 * 12 11 10 14 14 F 1.35105 * 119.92451 * 180.25330 * 13 12 11 15 15 C 1.38347 * 120.15113 * 0.27375 * 13 12 11 16 16 C 1.38739 * 119.97737 * 0.02562 * 15 13 12 17 17 O 1.35781 * 120.08491 * 179.97438 * 16 15 13 18 18 C 1.34801 * 117.00126 * 354.11440 * 17 16 15 19 19 H 1.08005 * 120.00010 * 354.48344 * 18 17 16 20 20 C 1.38632 * 119.99808 * 174.48262 * 18 17 16 21 21 N 1.31567 * 120.00208 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99798 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47253 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47439 * 120.00072 * 22 20 18 25 25 H 1.48504 * 109.46854 * 239.99586 * 22 20 18 26 26 C 1.47067 * 87.88441 * 333.10118 * 6 5 2 27 27 H 1.08997 * 109.46855 * 286.93810 * 1 2 3 28 28 H 1.09005 * 109.46562 * 46.93380 * 1 2 3 29 29 H 1.08995 * 109.46849 * 166.92946 * 1 2 3 30 30 H 1.09003 * 113.46676 * 25.06934 * 5 2 1 31 31 H 1.09001 * 113.47223 * 254.63715 * 5 2 1 32 32 H 0.97001 * 119.99474 * 5.65877 * 9 7 6 33 33 H 1.07997 * 119.99235 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.91204 * 179.71887 * 12 11 10 35 35 H 1.07999 * 120.01074 * 179.97438 * 15 13 12 36 36 H 0.96998 * 120.00261 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.46967 * 141.67471 * 26 6 5 38 38 H 1.09001 * 113.46843 * 272.11921 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1119 1.3522 0.0000 4 7 2.5609 2.3956 0.0011 5 6 2.1594 -0.9559 1.0227 6 7 3.1629 -1.3015 0.0047 7 6 4.4375 -1.7396 0.0079 8 8 5.0105 -1.9353 1.0623 9 7 5.0773 -1.9597 -1.1577 10 6 6.3588 -2.5268 -1.1573 11 6 6.7031 -3.4657 -0.1963 12 6 7.9691 -4.0199 -0.1936 13 6 8.8939 -3.6487 -1.1562 14 9 10.1284 -4.1976 -1.1518 15 6 8.5562 -2.7171 -2.1215 16 6 7.2890 -2.1521 -2.1265 17 8 6.9554 -1.2371 -3.0726 18 6 7.9361 -0.8301 -3.9031 19 1 8.9515 -1.1615 -3.7430 20 6 7.6413 0.0138 -4.9627 21 7 6.4045 0.4179 -5.1574 22 14 9.0002 0.5772 -6.1140 23 1 10.2922 -0.0133 -5.6813 24 1 8.6919 0.1348 -7.4976 25 1 9.0968 2.0587 -6.0780 26 6 2.1657 -0.9525 -1.0183 27 1 -0.3633 0.2994 0.9831 28 1 -0.3633 0.7018 -0.7508 29 1 -0.3633 -1.0010 -0.2324 30 1 1.5113 -1.7893 1.2940 31 1 2.5790 -0.4478 1.8910 32 1 4.6507 -1.7257 -1.9968 33 1 5.9831 -3.7608 0.5525 34 1 8.2369 -4.7475 0.5582 35 1 9.2789 -2.4291 -2.8706 36 1 6.1981 1.0081 -5.8990 37 1 2.5906 -0.4413 -1.8822 38 1 1.5193 -1.7850 -1.2963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794238940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:01 Heat of formation + Delta-G solvation = 3.918919 kcal Electronic energy + Delta-G solvation = -26020.664572 eV Core-core repulsion = 21973.769568 eV Total energy + Delta-G solvation = -4046.895005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.25079 -41.08940 -39.64481 -38.26117 -36.36541 -35.99523 -34.05899 -32.42023 -32.07266 -29.46413 -28.60323 -26.62068 -26.36546 -25.49322 -23.38077 -22.34875 -21.53540 -19.80942 -18.35451 -18.22599 -17.54971 -16.93656 -16.75992 -16.02533 -15.38897 -15.24765 -15.21454 -14.98029 -14.52541 -14.30992 -14.08127 -13.98393 -13.66845 -13.53929 -13.46279 -13.23518 -12.77711 -12.70551 -12.36205 -12.28358 -12.16800 -12.13518 -11.83219 -11.63982 -11.39428 -11.00787 -10.78818 -10.73801 -10.52028 -9.95685 -9.81137 -9.52264 -8.97551 -8.86881 -7.89316 -7.10728 -6.61529 -4.18776 1.81611 2.10924 2.40580 2.46884 2.67182 3.05550 3.07889 3.13384 3.31763 3.54071 3.83611 3.90177 4.05209 4.32386 4.41799 4.67917 4.85867 4.94713 5.03843 5.10521 5.18462 5.23835 5.29510 5.32537 5.45132 5.51131 5.58096 5.70334 5.74412 6.01712 6.20757 6.52176 6.71161 6.90217 6.90757 7.04904 7.17511 7.31293 7.44061 7.63456 7.82637 8.13547 8.76431 8.85044 9.45907 10.55757 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.004578 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.163604 B = 6115.310460 C = 8482.742634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C 0.226 3.774 4 N -0.411 5.411 5 C 0.147 3.853 6 N -0.669 5.669 7 C 0.738 3.262 8 O -0.576 6.576 9 N -0.660 5.660 10 C 0.079 3.921 11 C -0.050 4.050 12 C -0.226 4.226 13 C 0.129 3.871 14 F -0.151 7.151 15 C -0.257 4.257 16 C 0.157 3.843 17 O -0.169 6.169 18 C -0.391 4.391 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.115 3.885 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.143 0.857 36 H 0.271 0.729 37 H 0.090 0.910 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 -5.339 6.655 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.016 4.016 3 C -0.093 4.093 4 N -0.085 5.085 5 C 0.022 3.978 6 N -0.410 5.410 7 C 0.442 3.558 8 O -0.453 6.453 9 N -0.306 5.306 10 C -0.015 4.015 11 C -0.070 4.070 12 C -0.247 4.247 13 C 0.109 3.891 14 F -0.130 7.130 15 C -0.278 4.278 16 C 0.101 3.899 17 O -0.072 6.072 18 C -0.467 4.467 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.010 4.010 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.902 -3.706 7.194 14.392 hybrid contribution 0.689 -0.003 -1.121 1.316 sum -11.213 -3.709 6.074 13.280 Atomic orbital electron populations 1.21641 0.89125 1.04113 1.03810 1.19365 0.96495 0.84659 1.01109 1.27919 0.93553 0.93653 0.94148 1.81280 1.07741 1.12301 1.07174 1.22869 0.86965 0.95258 0.92660 1.48481 1.09696 1.72011 1.10768 1.15083 0.78969 0.77376 0.84354 1.90925 1.65133 1.58816 1.30464 1.42113 1.16209 1.64503 1.07818 1.16604 0.84467 1.00440 1.00008 1.20472 0.96151 0.93194 0.97218 1.20440 0.94251 1.07580 1.02400 1.17442 0.79777 0.95147 0.96750 1.91413 1.40853 1.84415 1.96310 1.20855 0.99040 1.03960 1.03902 1.18800 0.90828 0.89501 0.90753 1.83933 1.37541 1.47774 1.37926 1.21392 0.88551 1.28986 1.07730 0.88777 1.25283 0.97882 0.96137 0.96907 1.70010 1.18079 1.31679 1.29576 0.85618 0.79623 0.78800 0.79309 1.18904 1.19981 1.20048 1.23109 0.88765 0.95843 0.93250 0.90763 0.90961 0.89812 0.87690 0.89625 0.75325 0.84628 0.85878 0.83913 0.91889 0.89175 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.49 9.27 37.16 0.34 -0.14 16 2 C -0.01 -0.09 1.44 -156.92 -0.23 -0.32 16 3 C 0.23 2.83 14.46 -20.76 -0.30 2.53 16 4 N -0.41 -6.66 18.54 42.15 0.78 -5.88 16 5 C 0.15 1.26 7.76 -8.51 -0.07 1.19 16 6 N -0.67 -8.55 3.57 -191.16 -0.68 -9.23 16 7 C 0.74 13.12 8.52 -86.92 -0.74 12.38 16 8 O -0.58 -11.97 14.88 5.28 0.08 -11.89 16 9 N -0.66 -12.44 5.21 -14.07 -0.07 -12.52 16 10 C 0.08 1.67 6.29 -83.44 -0.52 1.15 16 11 C -0.05 -0.96 8.65 -39.43 -0.34 -1.30 16 12 C -0.23 -4.22 10.02 -39.48 -0.40 -4.62 16 13 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 14 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 15 C -0.26 -5.66 9.11 -39.36 -0.36 -6.02 16 16 C 0.16 3.67 6.66 -38.94 -0.26 3.42 16 17 O -0.17 -4.47 9.30 0.04 0.00 -4.47 16 18 C -0.39 -10.43 9.44 30.88 0.29 -10.14 16 19 H 0.09 2.38 5.30 -52.48 -0.28 2.10 16 20 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 21 N -0.86 -23.67 13.67 55.48 0.76 -22.92 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 C 0.12 1.00 7.42 -8.64 -0.06 0.94 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.30 8.13 -51.93 -0.42 -0.13 16 29 H 0.08 0.14 7.91 -51.93 -0.41 -0.27 16 30 H 0.11 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.41 7.42 8.27 -40.82 -0.34 7.08 16 33 H 0.14 2.51 6.48 -52.49 -0.34 2.17 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 35 H 0.14 3.15 5.72 -52.49 -0.30 2.85 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.11 0.56 7.95 -51.93 -0.41 0.14 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -34.32 343.68 -5.71 -40.03 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.74 Total: 7.18 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.02 Total: 2.41 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.78 Total: -50.54 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.08 Total: -16.35 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.32 -5.71 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794238940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.951 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds