Wall clock time and date at job start Tue Mar 31 2020 12:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34853 * 120.00232 * 2 1 4 4 C 1.46382 * 120.00494 * 180.02562 * 3 2 1 5 5 O 1.21704 * 119.99345 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00440 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00175 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47321 * 178.27152 * 7 6 4 9 9 C 1.50705 * 115.54828 * 65.14270 * 8 7 6 10 10 H 1.07997 * 120.00010 * 265.40583 * 9 8 7 11 11 C 1.37876 * 119.99939 * 85.40570 * 9 8 7 12 12 N 1.31509 * 120.00266 * 353.55181 * 11 9 8 13 13 Si 1.86805 * 119.99914 * 173.55374 * 11 9 8 14 14 H 1.48499 * 109.46804 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.46999 * 120.00099 * 13 11 9 16 16 H 1.48498 * 109.46951 * 239.99924 * 13 11 9 17 17 C 1.52997 * 117.49921 * 279.47462 * 8 7 6 18 18 C 1.52997 * 117.49997 * 210.81030 * 8 7 6 19 19 C 1.47145 * 119.99868 * 180.02562 * 2 1 3 20 20 C 1.39878 * 120.17892 * 284.99490 * 19 2 1 21 21 C 1.37831 * 119.83882 * 179.97438 * 20 19 2 22 22 C 1.38458 * 120.20851 * 359.97438 * 21 20 19 23 23 C 1.38312 * 120.36561 * 359.97438 * 22 21 20 24 24 C 1.38072 * 120.15900 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.10909 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.46800 * 270.00344 * 1 2 3 27 27 H 1.08999 * 109.47232 * 29.99715 * 1 2 3 28 28 H 1.08989 * 109.47306 * 150.00221 * 1 2 3 29 29 H 1.08007 * 120.00246 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00181 * 0.02562 * 6 4 3 31 31 H 1.09000 * 109.47399 * 298.27539 * 7 6 4 32 32 H 1.08998 * 109.46877 * 58.27113 * 7 6 4 33 33 H 0.97000 * 120.00242 * 185.05984 * 12 11 9 34 34 H 1.09001 * 117.50139 * 359.97438 * 17 8 7 35 35 H 1.09001 * 117.49925 * 145.02378 * 17 8 7 36 36 H 1.08997 * 117.50012 * 214.97810 * 18 8 7 37 37 H 1.08998 * 117.50113 * 359.97438 * 18 8 7 38 38 H 1.08007 * 120.07678 * 0.25326 * 20 19 2 39 39 H 1.08003 * 119.89678 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.81774 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.92346 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1813 1.1678 0.0000 4 6 3.6451 1.1679 -0.0006 5 8 4.2536 0.1139 -0.0006 6 7 4.3190 2.3350 -0.0011 7 6 5.7840 2.3350 -0.0011 8 6 6.2941 3.7768 -0.0452 9 6 5.9719 4.6175 1.1633 10 1 5.0942 5.2469 1.1649 11 6 6.7975 4.5831 2.2670 12 7 7.7931 3.7253 2.3170 13 14 6.5021 5.7551 3.6913 14 1 5.3282 6.6134 3.3907 15 1 6.2421 4.9754 4.9281 16 1 7.7015 6.6085 3.8871 17 6 6.3190 4.4760 -1.4059 18 6 7.6285 4.0329 -0.7485 19 6 2.2427 -1.2743 -0.0006 20 6 2.3233 -2.0402 1.1671 21 6 3.0138 -3.2331 1.1585 22 6 3.6267 -3.6749 -0.0017 23 6 3.5515 -2.9249 -1.1614 24 6 2.8638 -1.7277 -1.1699 25 17 2.7696 -0.7877 -2.6264 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5137 29 1 1.6414 2.1032 -0.0004 30 1 3.8341 3.1751 -0.0007 31 1 6.1474 1.8486 0.9042 32 1 6.1473 1.7942 -0.8749 33 1 8.3286 3.6501 3.1223 34 1 5.9724 3.9087 -2.2697 35 1 6.1028 5.5441 -1.4269 36 1 8.2731 4.8097 -0.3374 37 1 8.1433 3.1742 -1.1794 38 1 1.8418 -1.6999 2.0720 39 1 3.0770 -3.8250 2.0597 40 1 4.1665 -4.6104 -0.0012 41 1 4.0319 -3.2766 -2.0626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:47 Heat of formation + Delta-G solvation = 18.948380 kcal Electronic energy + Delta-G solvation = -24189.845100 eV Core-core repulsion = 20675.478541 eV Total energy + Delta-G solvation = -3514.366560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70172 -38.46924 -36.67981 -36.18892 -34.87128 -33.14977 -31.96574 -30.64491 -29.87900 -28.34314 -26.05040 -25.05833 -23.11791 -22.43199 -21.22695 -20.44603 -19.47438 -18.71779 -17.18775 -16.39201 -16.05874 -15.40263 -15.26816 -14.73412 -14.50104 -14.23413 -13.97792 -13.83943 -13.66810 -13.28386 -13.15357 -12.78842 -12.68659 -12.39508 -12.15814 -11.75129 -11.57189 -11.41326 -11.28558 -11.26221 -11.02332 -10.90338 -10.60250 -10.52004 -10.25907 -9.66844 -9.43266 -9.06175 -8.94499 -8.71081 -8.49571 -8.27967 -8.10327 -7.96823 -6.07485 -4.15977 1.16814 1.42865 1.60674 2.37895 3.24526 3.33579 3.35666 3.77133 3.89365 4.01490 4.35560 4.55120 4.89951 5.03862 5.09689 5.20949 5.29994 5.35402 5.39701 5.42625 5.53774 5.56820 5.78236 5.79434 5.95617 6.05465 6.19085 6.34614 6.36354 6.44014 6.47189 6.52424 6.55887 6.61443 6.71304 6.92912 6.94790 7.10951 7.35787 7.46572 7.51218 7.81914 8.34951 8.41148 8.84885 9.00298 9.50778 11.00444 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.003757 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.539255 B = 7450.305539 C = 7763.220446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 C -0.181 4.181 4 C 0.528 3.472 5 O -0.542 6.542 6 N -0.698 5.698 7 C 0.168 3.832 8 C 0.027 3.973 9 C -0.499 4.499 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.874 5.874 13 Si 0.889 3.111 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.210 4.210 18 C -0.148 4.148 19 C -0.013 4.013 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.111 4.111 24 C 0.011 3.989 25 Cl -0.074 7.074 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -11.053 -5.169 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 C -0.202 4.202 4 C 0.316 3.684 5 O -0.422 6.422 6 N -0.345 5.345 7 C 0.044 3.956 8 C 0.026 3.974 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.130 4.130 12 N -0.511 5.511 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.248 4.248 18 C -0.186 4.186 19 C -0.014 4.014 20 C -0.115 4.115 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.016 4.016 25 Cl -0.045 7.045 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.042 -11.702 -5.209 18.280 hybrid contribution -0.033 1.285 0.793 1.510 sum -13.075 -10.418 -4.416 17.291 Atomic orbital electron populations 1.20852 0.90170 1.03242 1.02757 1.20875 0.95326 0.91590 0.95346 1.23066 0.94524 0.97946 1.04668 1.18261 0.87675 0.84479 0.78011 1.90825 1.70044 1.30610 1.50716 1.45881 1.08684 1.07610 1.72369 1.20920 0.77287 0.97385 0.99972 1.19058 0.96868 0.91208 0.90242 1.20374 1.09707 1.25147 0.98414 0.92173 1.24983 0.94504 0.95281 0.98252 1.69987 1.18961 1.34472 1.27633 0.86591 0.78172 0.81215 0.82348 1.19702 1.21052 1.20951 1.23015 1.04516 0.99834 0.97394 1.22481 0.90890 1.01566 1.03692 1.18472 0.96912 0.93589 0.92431 1.21021 0.99751 0.94387 0.96378 1.20993 0.97925 0.96472 0.98078 1.21024 0.99808 0.99884 0.92398 1.20825 0.99141 0.93790 0.99214 1.20768 1.00142 0.93112 0.87568 1.98346 1.97122 1.73144 1.35891 0.90431 0.90773 0.91209 0.85211 0.76786 0.91117 0.94622 0.92920 0.91686 0.90401 0.89875 0.91737 0.85715 0.85871 0.85744 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.04 36.01 0.36 -0.68 16 2 C -0.03 -0.38 4.62 -102.21 -0.47 -0.86 16 3 C -0.18 -2.66 9.39 -37.51 -0.35 -3.01 16 4 C 0.53 10.01 7.38 -12.99 -0.10 9.91 16 5 O -0.54 -11.65 12.63 5.19 0.07 -11.59 16 6 N -0.70 -13.84 5.47 -61.72 -0.34 -14.18 16 7 C 0.17 3.87 5.50 -4.04 -0.02 3.85 16 8 C 0.03 0.64 1.38 -155.66 -0.21 0.43 16 9 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 10 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 11 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 12 N -0.87 -24.48 12.91 55.43 0.72 -23.76 16 13 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 18 C -0.15 -3.44 9.42 -26.69 -0.25 -3.69 16 19 C -0.01 -0.19 3.33 -105.03 -0.35 -0.54 16 20 C -0.10 -1.30 9.80 -39.12 -0.38 -1.68 16 21 C -0.12 -1.43 10.03 -39.65 -0.40 -1.83 16 22 C -0.11 -1.39 10.04 -39.47 -0.40 -1.79 16 23 C -0.11 -1.53 9.82 -39.61 -0.39 -1.92 16 24 C 0.01 0.16 4.60 -39.00 -0.18 -0.02 16 25 Cl -0.07 -1.10 27.28 -51.86 -1.41 -2.52 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.11 -51.94 -0.42 0.18 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.40 7.26 8.34 -40.82 -0.34 6.92 16 31 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -30.38 366.38 -10.07 -40.45 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.80 Total: 8.32 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.80 Total: -17.85 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.38 Total: -37.94 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.41 Total: -2.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.38 -10.07 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.397 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds