Wall clock time and date at job start Tue Mar 31 2020 12:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34855 * 120.00061 * 2 1 4 4 C 1.46381 * 120.00240 * 5.95627 * 3 2 1 5 5 O 1.21703 * 119.99454 * 5.37430 * 4 3 2 6 6 N 1.34778 * 120.00309 * 185.37115 * 4 3 2 7 7 C 1.46496 * 119.99853 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46926 * 175.20587 * 7 6 4 9 9 C 1.50699 * 115.54983 * 64.40988 * 8 7 6 10 10 H 1.08007 * 120.00022 * 273.30902 * 9 8 7 11 11 C 1.37876 * 120.00209 * 93.31480 * 9 8 7 12 12 N 1.31520 * 119.99799 * 4.51075 * 11 9 8 13 13 Si 1.86802 * 120.00356 * 184.51746 * 11 9 8 14 14 H 1.48493 * 109.47413 * 89.99634 * 13 11 9 15 15 H 1.48504 * 109.47013 * 209.99700 * 13 11 9 16 16 H 1.48505 * 109.46951 * 329.99174 * 13 11 9 17 17 C 1.53003 * 117.49998 * 278.74051 * 8 7 6 18 18 C 1.52999 * 117.49889 * 210.08070 * 8 7 6 19 19 C 1.47143 * 119.99832 * 180.02562 * 2 1 3 20 20 C 1.39876 * 120.18224 * 284.99373 * 19 2 1 21 21 C 1.37842 * 119.84036 * 179.74792 * 20 19 2 22 22 C 1.38453 * 120.20775 * 0.25995 * 21 20 19 23 23 C 1.38327 * 120.36583 * 0.02562 * 22 21 20 24 24 C 1.38073 * 120.15623 * 359.95847 * 23 22 21 25 25 Cl 1.73605 * 120.10448 * 180.02562 * 24 23 22 26 26 H 1.08998 * 109.46983 * 174.83798 * 1 2 3 27 27 H 1.09003 * 109.46606 * 294.83997 * 1 2 3 28 28 H 1.08999 * 109.47361 * 54.83393 * 1 2 3 29 29 H 1.08003 * 120.00010 * 185.95527 * 3 2 1 30 30 H 0.96996 * 119.99651 * 0.02562 * 6 4 3 31 31 H 1.09004 * 109.47100 * 295.20216 * 7 6 4 32 32 H 1.08997 * 109.47077 * 55.20838 * 7 6 4 33 33 H 0.96998 * 119.99694 * 185.00615 * 12 11 9 34 34 H 1.09000 * 117.49593 * 0.02562 * 17 8 7 35 35 H 1.09003 * 117.49717 * 145.01704 * 17 8 7 36 36 H 1.09005 * 117.49798 * 214.97828 * 18 8 7 37 37 H 1.09000 * 117.50096 * 359.97438 * 18 8 7 38 38 H 1.08002 * 120.07853 * 0.02624 * 20 19 2 39 39 H 1.08001 * 119.89325 * 180.23375 * 21 20 19 40 40 H 1.08001 * 119.81508 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.91960 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1813 1.1679 0.0000 4 6 1.4554 2.4322 0.1315 5 8 0.2561 2.4265 0.3389 6 7 2.1150 3.6025 0.0231 7 6 1.3885 4.8677 0.1554 8 6 2.3801 6.0321 0.1118 9 6 3.1234 6.2045 -1.1877 10 1 4.0396 5.6597 -1.3622 11 6 2.6341 7.0576 -2.1540 12 7 1.5681 7.7876 -1.9078 13 14 3.4849 7.1765 -3.8127 14 1 2.8943 6.1825 -4.7444 15 1 3.3025 8.5427 -4.3657 16 1 4.9343 6.8992 -3.6466 17 6 3.1264 6.3732 1.4032 18 6 2.0185 7.2975 0.8920 19 6 2.2427 -1.2743 -0.0006 20 6 2.3233 -2.0403 1.1671 21 6 3.0099 -3.2355 1.1572 22 6 3.6238 -3.6767 -0.0027 23 6 3.5544 -2.9232 -1.1607 24 6 2.8704 -1.7239 -1.1679 25 17 2.7836 -0.7796 -2.6221 26 1 -0.3633 -1.0235 -0.0925 27 1 -0.3633 0.4317 0.9326 28 1 -0.3634 0.5919 -0.8401 29 1 3.2569 1.1704 -0.0970 30 1 3.0707 3.6069 -0.1424 31 1 0.6770 4.9656 -0.6646 32 1 0.8532 4.8818 1.1047 33 1 1.1810 8.3329 -2.6104 34 1 2.9113 5.7677 2.2837 35 1 4.1550 6.7226 1.3127 36 1 2.3186 8.2547 0.4656 37 1 1.0740 7.3007 1.4361 38 1 1.8450 -1.6982 2.0729 39 1 3.0696 -3.8294 2.0573 40 1 4.1597 -4.6143 -0.0034 41 1 4.0363 -3.2740 -2.0613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:49 Heat of formation + Delta-G solvation = 14.178729 kcal Electronic energy + Delta-G solvation = -23457.583741 eV Core-core repulsion = 19943.010354 eV Total energy + Delta-G solvation = -3514.573387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80901 -38.99099 -36.76459 -36.55781 -34.85649 -33.27420 -31.91116 -31.09329 -30.18385 -28.09114 -26.08149 -25.12757 -23.56906 -22.83413 -21.16863 -20.54661 -19.55274 -18.68929 -17.17874 -16.52492 -16.23427 -15.72429 -15.53069 -14.82685 -14.72822 -14.43560 -14.21434 -14.01445 -13.88421 -13.59896 -12.96765 -12.81829 -12.59446 -12.53202 -11.81164 -11.79497 -11.76214 -11.67077 -11.57930 -11.51735 -11.01522 -10.94238 -10.88966 -10.52261 -10.18110 -9.52620 -9.34576 -9.19624 -9.10036 -9.07012 -8.80940 -8.43012 -8.20491 -8.04684 -6.07237 -4.16753 0.75947 0.92298 1.47212 1.98279 3.27012 3.28042 3.34501 3.35855 3.75635 3.89216 4.36176 4.46779 4.51470 4.66399 4.93644 5.06017 5.09328 5.19354 5.27466 5.37613 5.51115 5.59044 5.69077 5.85491 5.90889 6.03044 6.04137 6.07919 6.19824 6.37279 6.42680 6.45849 6.48900 6.57580 6.60729 6.74401 6.87984 7.16567 7.29877 7.40686 7.63354 7.80777 8.31793 8.35150 8.84474 8.88715 9.50351 10.99631 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.003260 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.767740 B = 8586.020599 C = 9526.707199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.019 4.019 3 C -0.185 4.185 4 C 0.534 3.466 5 O -0.555 6.555 6 N -0.698 5.698 7 C 0.164 3.836 8 C 0.018 3.982 9 C -0.497 4.497 10 H 0.059 0.941 11 C 0.073 3.927 12 N -0.875 5.875 13 Si 0.888 3.112 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.213 4.213 18 C -0.134 4.134 19 C -0.042 4.042 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.027 4.027 25 Cl -0.055 7.055 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -21.660 4.406 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.021 4.021 3 C -0.205 4.205 4 C 0.323 3.677 5 O -0.437 6.437 6 N -0.345 5.345 7 C 0.041 3.959 8 C 0.017 3.983 9 C -0.535 4.535 10 H 0.077 0.923 11 C -0.130 4.130 12 N -0.512 5.512 13 Si 0.716 3.284 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.251 4.251 18 C -0.172 4.172 19 C -0.043 4.043 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.053 4.053 25 Cl -0.026 7.026 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.142 0.858 30 H 0.236 0.764 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.339 -21.317 4.347 21.881 hybrid contribution 1.001 0.245 -1.265 1.632 sum 3.340 -21.072 3.082 21.556 Atomic orbital electron populations 1.20901 0.89462 1.00746 1.04728 1.20852 0.96348 0.90336 0.94584 1.22857 1.00174 0.92144 1.05372 1.18191 0.87150 0.84272 0.78135 1.90753 1.14595 1.87903 1.50469 1.45908 1.12605 1.05700 1.70310 1.21015 0.94218 0.81459 0.99243 1.19061 0.96253 0.92354 0.90600 1.20352 1.08803 1.25376 0.98953 0.92269 1.24976 0.95301 0.94285 0.98481 1.70014 1.21776 1.26978 1.32396 0.86656 0.80032 0.77346 0.84393 1.20601 1.21229 1.19822 1.23061 0.97180 1.06263 0.98563 1.22443 0.95987 0.96596 1.02203 1.18888 0.97739 0.95155 0.92488 1.21283 0.98704 0.94011 0.97002 1.21176 0.97490 0.96173 0.98528 1.21201 0.99468 0.99828 0.92259 1.21014 0.99277 0.93177 0.99503 1.21212 1.01310 0.94405 0.88407 1.98414 1.97118 1.71949 1.35122 0.93324 0.89312 0.89932 0.85815 0.76437 0.91794 0.94058 0.92919 0.91891 0.90448 0.88923 0.91996 0.84723 0.85175 0.85120 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 8.34 36.00 0.30 -1.10 16 2 C -0.02 -0.26 4.62 -102.21 -0.47 -0.73 16 3 C -0.18 -2.76 9.38 -37.51 -0.35 -3.11 16 4 C 0.53 9.94 7.68 -12.98 -0.10 9.84 16 5 O -0.56 -11.65 13.25 5.19 0.07 -11.58 16 6 N -0.70 -13.60 5.47 -61.72 -0.34 -13.94 16 7 C 0.16 3.69 5.50 -4.04 -0.02 3.66 16 8 C 0.02 0.43 1.63 -155.66 -0.25 0.17 16 9 C -0.50 -12.88 8.61 -34.44 -0.30 -13.18 16 10 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 11 C 0.07 1.96 5.41 -17.82 -0.10 1.86 16 12 N -0.88 -24.31 11.93 55.43 0.66 -23.65 16 13 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 18 C -0.13 -3.13 8.86 -26.69 -0.24 -3.37 16 19 C -0.04 -0.48 5.20 -105.03 -0.55 -1.03 16 20 C -0.09 -0.86 9.80 -39.11 -0.38 -1.24 16 21 C -0.12 -0.87 10.03 -39.65 -0.40 -1.27 16 22 C -0.11 -0.81 10.04 -39.47 -0.40 -1.20 16 23 C -0.11 -0.99 9.82 -39.61 -0.39 -1.38 16 24 C -0.03 -0.30 6.36 -39.00 -0.25 -0.55 16 25 Cl -0.06 -0.69 27.79 -51.86 -1.44 -2.13 16 26 H 0.05 0.56 7.99 -51.93 -0.42 0.15 16 27 H 0.09 1.30 7.10 -51.93 -0.37 0.93 16 28 H 0.08 1.29 7.45 -51.93 -0.39 0.90 16 29 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.40 7.29 8.28 -40.82 -0.34 6.95 16 31 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.09 2.34 7.65 -51.93 -0.40 1.95 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -29.31 366.09 -10.39 -39.70 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.68 Total: 7.79 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -4.16 Total: -17.42 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.32 Total: -37.59 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.44 Total: -2.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.31 -10.39 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.874 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds