Wall clock time and date at job start Tue Mar 31 2020 12:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.34804 * 119.99506 * 2 1 4 4 C 1.46425 * 120.00398 * 15.36170 * 3 2 1 5 5 O 1.21690 * 120.00026 * 8.01800 * 4 3 2 6 6 N 1.34776 * 119.99995 * 188.01819 * 4 3 2 7 7 C 1.46495 * 119.99961 * 174.95444 * 6 4 3 8 8 C 1.53006 * 109.47106 * 185.15710 * 7 6 4 9 9 C 1.50698 * 115.54923 * 61.10989 * 8 7 6 10 10 H 1.08000 * 120.00040 * 272.22143 * 9 8 7 11 11 C 1.37883 * 120.00009 * 92.22400 * 9 8 7 12 12 N 1.31512 * 119.99948 * 182.76318 * 11 9 8 13 13 Si 1.86799 * 119.99893 * 2.75765 * 11 9 8 14 14 H 1.48499 * 109.47241 * 93.67732 * 13 11 9 15 15 H 1.48500 * 109.47117 * 213.67978 * 13 11 9 16 16 H 1.48510 * 109.47242 * 333.68063 * 13 11 9 17 17 C 1.53007 * 117.49748 * 275.44056 * 8 7 6 18 18 C 1.53003 * 117.49753 * 206.78308 * 8 7 6 19 19 C 1.47208 * 119.99961 * 180.02562 * 2 1 3 20 20 C 1.39854 * 120.16139 * 114.71930 * 19 2 1 21 21 C 1.37885 * 119.85075 * 179.76413 * 20 19 2 22 22 C 1.38395 * 120.18279 * 0.51928 * 21 20 19 23 23 C 1.38498 * 120.33508 * 359.73437 * 22 21 20 24 24 Cl 1.73605 * 119.92764 * 180.02562 * 23 22 21 25 25 C 1.38029 * 120.14305 * 0.02562 * 23 22 21 26 26 H 1.08995 * 109.46753 * 276.02264 * 1 2 3 27 27 H 1.08998 * 109.46665 * 156.02711 * 1 2 3 28 28 H 1.08995 * 109.46864 * 36.02330 * 1 2 3 29 29 H 1.08009 * 119.99606 * 195.35865 * 3 2 1 30 30 H 0.97001 * 120.00135 * 354.95523 * 6 4 3 31 31 H 1.09002 * 109.47358 * 305.15335 * 7 6 4 32 32 H 1.08996 * 109.47510 * 65.15815 * 7 6 4 33 33 H 0.97006 * 119.99710 * 180.02562 * 12 11 9 34 34 H 1.08998 * 117.49529 * 359.97438 * 17 8 7 35 35 H 1.09004 * 117.49372 * 145.02068 * 17 8 7 36 36 H 1.09000 * 117.49581 * 214.98059 * 18 8 7 37 37 H 1.08996 * 117.49937 * 359.97438 * 18 8 7 38 38 H 1.07998 * 120.07635 * 0.02562 * 20 19 2 39 39 H 1.07999 * 119.90635 * 180.23567 * 21 20 19 40 40 H 1.08007 * 119.83226 * 179.76589 * 22 21 20 41 41 H 1.07997 * 120.09324 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 1.4881 2.4129 0.3359 5 8 0.3463 2.3798 0.7555 6 7 2.1149 3.5959 0.1804 7 6 1.3871 4.8462 0.4104 8 6 2.2820 6.0320 0.0441 9 6 2.7325 6.0868 -1.3929 10 1 3.6321 5.5723 -1.6968 11 6 1.9961 6.7938 -2.3198 12 7 2.3589 6.7969 -3.5839 13 14 0.4831 7.7471 -1.7800 14 1 0.8612 9.1538 -1.4913 15 1 -0.5319 7.7197 -2.8637 16 1 -0.0830 7.1255 -0.5558 17 6 3.2567 6.5372 1.1098 18 6 2.0176 7.3620 0.7528 19 6 2.2431 -1.2749 -0.0006 20 6 3.0324 -1.6301 -1.0991 21 6 3.7229 -2.8235 -1.0908 22 6 3.6284 -3.6746 -0.0036 23 6 2.8448 -3.3329 1.0861 24 17 2.7343 -4.4081 2.4446 25 6 2.1516 -2.1393 1.0944 26 1 -0.3633 0.1078 1.0220 27 1 -0.3632 -0.9390 -0.4175 28 1 -0.3633 0.8311 -0.6044 29 1 3.2322 1.1842 -0.2478 30 1 3.0479 3.6194 -0.0838 31 1 0.4898 4.8635 -0.2083 32 1 1.1053 4.9147 1.4610 33 1 1.8411 7.2946 -4.2359 34 1 3.2601 6.0250 2.0720 35 1 4.2237 6.9095 0.7714 36 1 2.1698 8.2766 0.1797 37 1 1.2059 7.3923 1.4797 38 1 3.1042 -0.9692 -1.9503 39 1 4.3357 -3.0970 -1.9371 40 1 4.1687 -4.6098 -0.0047 41 1 1.5412 -1.8735 1.9447 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:51 Heat of formation + Delta-G solvation = 17.235860 kcal Electronic energy + Delta-G solvation = -23171.128961 eV Core-core repulsion = 19656.688141 eV Total energy + Delta-G solvation = -3514.440820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85737 -39.11299 -37.20746 -36.79147 -34.83999 -33.43036 -32.15217 -31.13688 -30.25013 -28.22332 -26.34903 -25.21606 -23.65203 -22.83570 -21.85483 -20.70631 -19.52057 -18.68977 -17.18853 -16.63720 -16.38541 -15.80932 -15.59684 -15.16141 -14.91146 -14.55577 -14.25569 -13.97689 -13.96943 -13.67333 -13.08586 -12.97919 -12.80732 -12.66356 -12.36056 -12.00420 -11.88343 -11.83161 -11.66216 -11.59114 -11.19751 -11.15313 -10.94073 -10.47834 -10.22038 -9.66043 -9.50508 -9.35261 -9.18046 -9.12004 -8.79382 -8.65937 -8.56737 -8.23201 -6.18985 -4.23625 0.68969 0.89891 1.39245 1.84270 3.25101 3.26651 3.37045 3.42160 3.63415 3.77517 4.37091 4.40397 4.51932 4.73818 4.85512 4.88359 5.03240 5.06879 5.10600 5.30919 5.42753 5.50122 5.64139 5.66010 5.82657 5.86267 5.98171 5.98839 6.01447 6.04006 6.15652 6.22069 6.37835 6.39086 6.40028 6.47253 6.58149 6.66896 6.94379 7.05088 7.12310 7.64781 8.17235 8.37514 8.75143 8.80747 9.44084 10.92255 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.002527 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.725921 B =11079.779206 C =11388.480923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.014 4.014 3 C -0.191 4.191 4 C 0.537 3.463 5 O -0.555 6.555 6 N -0.696 5.696 7 C 0.159 3.841 8 C -0.015 4.015 9 C -0.491 4.491 10 H 0.079 0.921 11 C 0.079 3.921 12 N -0.895 5.895 13 Si 0.881 3.119 14 H -0.280 1.280 15 H -0.295 1.295 16 H -0.255 1.255 17 C -0.181 4.181 18 C -0.193 4.193 19 C -0.037 4.037 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.033 4.033 24 Cl -0.072 7.072 25 C -0.094 4.094 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -19.459 7.540 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.017 4.017 3 C -0.212 4.212 4 C 0.326 3.674 5 O -0.436 6.436 6 N -0.344 5.344 7 C 0.035 3.965 8 C -0.016 4.016 9 C -0.528 4.528 10 H 0.097 0.903 11 C -0.124 4.124 12 N -0.531 5.531 13 Si 0.709 3.291 14 H -0.207 1.207 15 H -0.223 1.223 16 H -0.179 1.179 17 C -0.218 4.218 18 C -0.230 4.230 19 C -0.037 4.037 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.060 4.060 24 Cl -0.043 7.043 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.239 0.761 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.136 -19.464 7.749 20.981 hybrid contribution -0.202 0.629 0.044 0.662 sum 0.934 -18.835 7.794 20.405 Atomic orbital electron populations 1.20930 0.89746 1.02028 1.03782 1.20905 0.96219 0.90507 0.94027 1.22889 1.00961 0.92205 1.05169 1.18203 0.86134 0.84060 0.79028 1.90757 1.18206 1.87697 1.46989 1.45741 1.15542 1.05262 1.67813 1.21057 0.94868 0.82451 0.98077 1.19644 0.97238 0.90389 0.94349 1.20174 1.11073 1.33237 0.88336 0.90348 1.24997 0.97100 0.95772 0.94555 1.69888 1.39985 1.41659 1.01589 0.86838 0.83049 0.80496 0.78690 1.20652 1.22261 1.17942 1.22921 0.94673 1.05188 0.99053 1.22916 0.99443 0.96801 1.03875 1.18893 0.97004 0.93833 0.94015 1.21553 0.95588 0.96909 0.97897 1.21079 0.99251 0.93900 0.98049 1.21147 0.98777 1.00664 0.92532 1.20784 1.01552 0.93037 0.90588 1.98377 1.97389 1.64299 1.44226 1.21109 0.99393 0.91957 0.98819 0.89964 0.92612 0.89778 0.85332 0.76090 0.91809 0.93860 0.92475 0.90884 0.89387 0.89293 0.90591 0.84699 0.84716 0.84947 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.37 36.01 0.30 -1.11 16 2 C -0.01 -0.18 5.44 -102.19 -0.56 -0.74 16 3 C -0.19 -2.66 9.62 -37.51 -0.36 -3.03 16 4 C 0.54 9.47 7.50 -12.97 -0.10 9.38 16 5 O -0.55 -11.12 13.71 5.20 0.07 -11.05 16 6 N -0.70 -12.74 5.40 -61.71 -0.33 -13.08 16 7 C 0.16 3.28 5.44 -4.04 -0.02 3.26 16 8 C -0.01 -0.32 0.91 -155.65 -0.14 -0.47 16 9 C -0.49 -12.71 9.17 -34.44 -0.32 -13.03 16 10 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 13 Si 0.88 21.21 24.87 -169.99 -4.23 16.99 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.26 -5.87 6.10 56.52 0.34 -5.52 16 17 C -0.18 -3.43 9.95 -26.69 -0.27 -3.70 16 18 C -0.19 -3.92 7.07 -26.69 -0.19 -4.11 16 19 C -0.04 -0.40 5.28 -105.06 -0.56 -0.96 16 20 C -0.10 -0.96 9.73 -39.11 -0.38 -1.34 16 21 C -0.10 -0.83 10.03 -39.65 -0.40 -1.23 16 22 C -0.11 -0.93 9.82 -39.43 -0.39 -1.32 16 23 C -0.03 -0.32 6.31 -39.56 -0.25 -0.57 16 24 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 25 C -0.09 -0.97 9.56 -39.07 -0.37 -1.34 16 26 H 0.08 1.10 7.77 -51.93 -0.40 0.70 16 27 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.08 1.27 6.88 -51.93 -0.36 0.91 16 29 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.40 6.88 8.33 -40.82 -0.34 6.54 16 31 H 0.06 1.45 7.91 -51.93 -0.41 1.04 16 32 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.09 1.90 6.43 -51.93 -0.33 1.57 16 37 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -29.83 361.45 -9.54 -39.37 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.68 Total: 8.11 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -4.09 Total: -18.23 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.44 Total: -38.49 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.23 Total: 16.99 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.83 -9.54 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.609 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds