Wall clock time and date at job start Tue Mar 31 2020 12:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 C 1.52997 * 109.47134 * 120.00356 * 2 1 3 5 5 N 1.46493 * 109.47432 * 65.00088 * 4 2 1 6 6 C 1.46504 * 120.00027 * 264.38718 * 5 4 2 7 7 C 1.50699 * 109.46843 * 262.07938 * 6 5 4 8 8 H 1.07996 * 120.00340 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99813 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99819 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00067 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47077 * 90.00466 * 11 9 7 13 13 H 1.48502 * 109.47284 * 210.00030 * 11 9 7 14 14 H 1.48505 * 109.47291 * 330.00194 * 11 9 7 15 15 C 1.34777 * 120.00357 * 84.38227 * 5 4 2 16 16 O 1.21551 * 119.99539 * 2.14450 * 15 5 4 17 17 C 1.47812 * 120.00229 * 182.14668 * 15 5 4 18 18 N 1.28948 * 124.85602 * 171.39922 * 17 15 5 19 19 C 1.33213 * 118.16271 * 179.97438 * 18 17 15 20 20 C 1.41653 * 129.12230 * 180.02562 * 19 18 17 21 21 C 1.36504 * 118.88165 * 179.97438 * 20 19 18 22 22 C 1.38787 * 119.89754 * 359.97438 * 21 20 19 23 23 N 1.31392 * 120.95785 * 0.02562 * 22 21 20 24 24 C 1.33040 * 121.81553 * 359.97438 * 23 22 21 25 25 S 1.75854 * 124.85512 * 351.37636 * 17 15 5 26 26 H 1.09004 * 109.47091 * 299.99807 * 1 2 3 27 27 H 1.09002 * 109.47099 * 59.99744 * 1 2 3 28 28 H 1.08997 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47091 * 240.00193 * 2 1 3 30 30 H 1.09002 * 109.46443 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47468 * 299.99932 * 3 2 1 32 32 H 1.09006 * 109.46891 * 60.00692 * 3 2 1 33 33 H 1.09003 * 109.46915 * 304.99809 * 4 2 1 34 34 H 1.09007 * 109.46814 * 184.99973 * 4 2 1 35 35 H 1.09003 * 109.47249 * 22.07769 * 6 5 4 36 36 H 1.08999 * 109.47241 * 142.07749 * 6 5 4 37 37 H 0.97003 * 119.99968 * 179.97438 * 10 9 7 38 38 H 1.08004 * 120.56208 * 359.95360 * 20 19 18 39 39 H 1.07995 * 120.05164 * 179.72045 * 21 20 19 40 40 H 1.07992 * 119.52531 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.4353 -2.5871 1.8675 7 6 0.7959 -3.1783 3.2059 8 1 1.8285 -3.2127 3.5206 9 6 -0.1924 -3.6754 4.0288 10 7 -1.4498 -3.6340 3.6454 11 14 0.2545 -4.4089 5.6876 12 1 0.2342 -3.3434 6.7217 13 1 -0.7288 -5.4632 6.0438 14 1 1.6135 -5.0035 5.6159 15 6 2.4157 -3.0137 0.5135 16 8 3.4459 -2.6444 -0.0154 17 6 1.9999 -4.4286 0.4143 18 7 2.5668 -5.3126 -0.3340 19 6 2.0814 -6.5530 -0.3199 20 6 2.5184 -7.6921 -1.0397 21 6 1.8608 -8.8753 -0.8639 22 6 0.7842 -8.9454 0.0092 23 7 0.3832 -7.8856 0.6742 24 6 0.9852 -6.7063 0.5436 25 16 0.6618 -5.1474 1.3004 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 -0.2367 -1.7413 2.0131 36 1 -0.0591 -3.3431 1.2576 37 1 -2.1451 -3.9840 4.2242 38 1 3.3575 -7.6255 -1.7164 39 1 2.1751 -9.7545 -1.4066 40 1 0.2681 -9.8845 0.1433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801142535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:18 Heat of formation + Delta-G solvation = 11.932840 kcal Electronic energy + Delta-G solvation = -24726.960721 eV Core-core repulsion = 21246.626402 eV Total energy + Delta-G solvation = -3480.334319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74853 -41.03332 -38.48659 -37.55374 -35.93871 -34.33606 -33.39592 -31.25305 -29.72395 -28.27263 -27.99133 -26.14915 -25.20764 -24.77514 -23.19715 -21.36425 -20.51878 -19.46145 -18.80270 -18.33205 -18.17655 -17.23242 -16.76389 -16.65189 -16.39424 -15.96545 -15.83032 -15.53697 -14.77120 -14.66928 -14.46616 -14.26393 -14.20042 -13.75034 -13.56276 -13.54421 -13.15134 -13.00830 -12.81242 -12.69110 -12.40717 -12.22428 -12.10587 -11.96724 -11.69793 -11.56980 -11.46109 -11.34880 -10.84783 -10.57579 -10.14106 -9.94475 -9.64487 -9.34486 -8.30933 -6.37878 -1.03293 0.08912 0.21621 0.84475 0.91373 1.38048 1.43020 1.48884 1.76424 1.97919 2.34509 2.72495 2.98861 3.03227 3.46418 3.62260 3.77177 3.94959 3.96265 4.01919 4.17472 4.39612 4.52512 4.62110 4.65590 4.70756 4.82236 4.88533 4.90184 4.99122 5.02089 5.05401 5.07630 5.24408 5.36572 5.44852 5.53578 5.56373 5.67805 5.81448 6.16657 6.41747 6.63257 6.75653 6.97565 7.24162 8.72624 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.006226 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.774863 B = 4495.924261 C = 6437.075840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.578 5.578 6 C 0.233 3.767 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.053 3.947 10 N -0.888 5.888 11 Si 0.932 3.068 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.587 3.413 16 O -0.555 6.555 17 C 0.009 3.991 18 N -0.438 5.438 19 C -0.009 4.009 20 C -0.026 4.026 21 C -0.153 4.153 22 C 0.136 3.864 23 N -0.480 5.480 24 C -0.079 4.079 25 S 0.306 5.694 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.275 0.725 38 H 0.164 0.836 39 H 0.198 0.802 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -3.076 -6.581 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.308 5.308 6 C 0.110 3.890 7 C -0.589 4.589 8 H 0.076 0.924 9 C -0.153 4.153 10 N -0.525 5.525 11 Si 0.757 3.243 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.201 1.201 15 C 0.371 3.629 16 O -0.435 6.435 17 C -0.272 4.272 18 N -0.156 5.156 19 C -0.138 4.138 20 C -0.054 4.054 21 C -0.175 4.175 22 C -0.039 4.039 23 N -0.190 5.190 24 C -0.323 4.323 25 S 0.570 5.430 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.181 0.819 39 H 0.215 0.785 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.993 -2.239 -5.776 6.274 hybrid contribution 1.073 -1.062 0.033 1.510 sum 2.066 -3.300 -5.743 6.939 Atomic orbital electron populations 1.21844 0.94461 1.01147 1.02541 1.21459 0.96704 0.97576 0.97043 1.21695 1.01039 0.93426 1.03015 1.21753 1.00571 0.78069 0.99491 1.48030 1.25225 1.08610 1.48896 1.19641 0.82135 0.95977 0.91237 1.21542 0.94265 1.41065 1.02072 0.92403 1.25328 0.94584 0.94970 1.00425 1.69934 1.00076 1.44140 1.38303 0.85922 0.78306 0.78942 0.81101 1.19012 1.20274 1.20148 1.17002 0.83629 0.82712 0.79592 1.90684 1.25050 1.78722 1.49049 1.27012 1.00474 0.98848 1.00846 1.65642 1.28904 1.00726 1.20287 1.20403 0.97818 0.92629 1.02910 1.21399 0.99204 0.89202 0.95628 1.22184 0.96325 0.98885 1.00131 1.23918 0.93516 0.96662 0.89772 1.67344 1.29659 0.97789 1.24256 1.27398 0.99187 1.03519 1.02174 1.88250 1.26374 0.92709 1.35651 0.91671 0.91432 0.94595 0.93142 0.92521 0.91269 0.91233 0.88498 0.90963 0.91820 0.95012 0.91580 0.81858 0.78498 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.38 71.98 0.60 -3.44 16 2 C -0.11 -3.20 3.09 -10.79 -0.03 -3.23 16 3 C -0.13 -2.99 9.19 71.98 0.66 -2.33 16 4 C 0.12 4.22 4.77 86.38 0.41 4.63 16 5 N -0.58 -24.10 2.22 -829.62 -1.84 -25.94 16 6 C 0.23 10.39 3.61 85.63 0.31 10.70 16 7 C -0.55 -26.37 6.90 25.60 0.18 -26.20 16 8 H 0.06 2.92 7.81 -2.91 -0.02 2.89 16 9 C 0.05 2.55 4.98 84.65 0.42 2.97 16 10 N -0.89 -44.20 13.29 21.45 0.28 -43.92 16 11 Si 0.93 39.81 29.54 68.60 2.03 41.84 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 15 C 0.59 27.12 7.57 86.78 0.66 27.77 16 16 O -0.56 -27.33 16.71 -3.88 -0.06 -27.40 16 17 C 0.01 0.42 7.19 87.65 0.63 1.05 16 18 N -0.44 -19.77 10.46 -180.89 -1.89 -21.66 16 19 C -0.01 -0.36 6.95 40.30 0.28 -0.08 16 20 C -0.03 -0.72 10.18 22.71 0.23 -0.49 16 21 C -0.15 -3.07 10.00 22.00 0.22 -2.85 16 22 C 0.14 3.28 11.18 84.89 0.95 4.23 16 23 N -0.48 -17.45 10.39 -190.60 -1.98 -19.43 16 24 C -0.08 -3.30 7.72 85.03 0.66 -2.65 16 25 S 0.31 13.92 16.05 -56.49 -0.91 13.01 16 26 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 1.18 6.47 -2.39 -0.02 1.17 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.10 3.08 8.02 -2.39 -0.02 3.06 16 34 H 0.07 2.53 7.57 -2.38 -0.02 2.51 16 35 H 0.06 2.83 6.97 -2.39 -0.02 2.81 16 36 H 0.03 1.55 4.52 -21.17 -0.10 1.46 16 37 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 38 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.21 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.31 344.37 2.78 -62.52 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.98 Total: 10.86 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.17 Total: 10.10 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -5.42 Total: -110.94 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 13.92 SS G_CDS: -0.91 Total: 13.01 kcal Total: -65.31 2.78 -62.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801142535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.457 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds