Wall clock time and date at job start Tue Mar 31 2020 12:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00078 * 2 1 4 4 N 1.46503 * 109.46764 * 125.00278 * 3 2 1 5 5 C 1.46504 * 120.00036 * 270.00049 * 4 3 2 6 6 C 1.50693 * 109.47166 * 270.00494 * 5 4 3 7 7 H 1.08001 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99748 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00055 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46915 * 90.00110 * 10 8 6 12 12 H 1.48499 * 109.46959 * 209.99924 * 10 8 6 13 13 H 1.48497 * 109.47125 * 329.99868 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00209 * 4 3 2 15 15 O 1.21690 * 119.99723 * 179.97438 * 14 4 3 16 16 C 1.46423 * 120.00073 * 0.02562 * 14 4 3 17 17 C 1.34800 * 120.00449 * 180.02562 * 16 14 4 18 18 C 1.50697 * 120.00576 * 180.02562 * 17 16 14 19 19 C 1.47215 * 119.99890 * 359.97438 * 17 16 14 20 20 C 1.39867 * 120.16257 * 295.25526 * 19 17 16 21 21 C 1.37870 * 119.85187 * 180.25278 * 20 19 17 22 22 C 1.38401 * 120.18617 * 359.46862 * 21 20 19 23 23 C 1.38495 * 120.33152 * 0.27948 * 22 21 20 24 24 Cl 1.73600 * 119.92837 * 179.97438 * 23 22 21 25 25 C 1.38032 * 120.14638 * 359.97438 * 23 22 21 26 26 H 1.08001 * 119.99747 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99841 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99747 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47232 * 5.00783 * 3 2 1 30 30 H 1.08995 * 109.47658 * 245.00235 * 3 2 1 31 31 H 1.09003 * 109.46982 * 30.00319 * 5 4 3 32 32 H 1.08996 * 109.47205 * 149.99902 * 5 4 3 33 33 H 0.97006 * 119.99506 * 180.02562 * 9 8 6 34 34 H 1.08001 * 119.99978 * 359.97438 * 16 14 4 35 35 H 1.09000 * 109.46748 * 269.99481 * 18 17 16 36 36 H 1.08997 * 109.47491 * 29.99256 * 18 17 16 37 37 H 1.08999 * 109.47751 * 149.99825 * 18 17 16 38 38 H 1.07997 * 120.07124 * 359.97438 * 20 19 17 39 39 H 1.08002 * 119.90998 * 179.75268 * 21 20 19 40 40 H 1.07996 * 119.83766 * 180.25880 * 22 21 20 41 41 H 1.07994 * 120.09752 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8647 2.4249 6 6 2.8443 3.3433 2.4806 7 1 3.3041 3.8367 1.6369 8 6 2.5195 4.0662 3.6089 9 7 2.7690 5.3566 3.6576 10 14 1.7250 3.2127 5.0682 11 1 2.7811 2.7215 5.9894 12 1 0.8491 4.1730 5.7865 13 1 0.9133 2.0653 4.5889 14 6 4.2498 0.8660 0.9823 15 8 5.0226 0.8886 1.9220 16 6 4.6846 0.3339 -0.3106 17 6 5.9406 -0.1325 -0.4597 18 6 6.3883 -0.6796 -1.7905 19 6 6.8753 -0.1062 0.6774 20 6 7.2905 1.1152 1.2177 21 6 8.1701 1.1324 2.2793 22 6 8.6341 -0.0550 2.8178 23 6 8.2239 -1.2689 2.2921 24 17 8.8131 -2.7521 2.9754 25 6 7.3477 -1.3021 1.2261 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6214 1.4027 -0.9313 31 1 1.4889 1.6964 2.5460 32 1 3.0991 1.3600 3.2260 33 1 2.5407 5.8650 4.4516 34 1 3.9988 0.3142 -1.1447 35 1 6.1815 -1.7490 -1.8318 36 1 5.8489 -0.1740 -2.5914 37 1 7.4586 -0.5117 -1.9110 38 1 6.9263 2.0428 0.8015 39 1 8.4944 2.0751 2.6947 40 1 9.3197 -0.0350 3.6520 41 1 7.0287 -2.2490 0.8165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:58 Heat of formation + Delta-G solvation = 29.775046 kcal Electronic energy + Delta-G solvation = -24252.034112 eV Core-core repulsion = 20738.137031 eV Total energy + Delta-G solvation = -3513.897080 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78419 -38.56778 -36.46489 -35.75145 -34.73364 -33.15538 -32.12551 -30.55948 -29.88448 -28.96044 -27.28573 -25.51896 -23.47458 -22.36729 -22.24691 -20.17679 -19.50541 -18.25672 -16.94544 -16.87752 -16.40412 -15.72283 -15.21128 -14.93417 -14.59385 -14.32862 -14.04877 -13.78299 -13.54506 -13.32321 -13.17463 -12.95533 -12.90038 -12.46622 -12.24474 -12.14129 -11.74075 -11.62237 -11.39836 -11.34697 -11.15777 -11.11104 -10.91921 -10.67162 -10.52767 -10.15758 -9.58052 -9.38271 -9.26354 -8.98901 -8.62410 -8.59343 -7.94820 -7.69948 -6.09774 -4.08066 1.11816 1.54190 1.76206 2.28376 2.36299 3.28950 3.34994 3.37635 3.83904 3.92855 3.96841 4.39313 4.61773 4.87495 5.04249 5.14605 5.21777 5.23735 5.29665 5.33898 5.40764 5.45328 5.48238 5.64493 5.67197 5.75318 5.90777 5.94207 6.02291 6.12700 6.26060 6.35457 6.47688 6.61014 6.71367 6.72412 6.79328 6.84296 6.97773 7.05654 7.36865 7.61025 8.25866 8.46206 8.92128 9.00167 9.51249 11.03492 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.004514 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.579460 B = 6201.725642 C = 7541.199647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.583 5.583 5 C 0.218 3.782 6 C -0.526 4.526 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.531 3.469 15 O -0.525 6.525 16 C -0.194 4.194 17 C -0.023 4.023 18 C -0.116 4.116 19 C -0.029 4.029 20 C -0.034 4.034 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.042 4.042 24 Cl -0.088 7.088 25 C -0.100 4.100 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -13.628 -10.599 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.313 5.313 5 C 0.098 3.902 6 C -0.564 4.564 7 H 0.092 0.908 8 C -0.128 4.128 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.321 3.679 15 O -0.404 6.404 16 C -0.214 4.214 17 C -0.025 4.025 18 C -0.173 4.173 19 C -0.029 4.029 20 C -0.052 4.052 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.069 4.069 24 Cl -0.059 7.059 25 C -0.119 4.119 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.653 -13.552 -9.889 18.048 hybrid contribution -0.721 -0.396 0.987 1.285 sum 5.932 -13.948 -8.902 17.578 Atomic orbital electron populations 1.23842 0.95873 1.01798 1.00722 1.23480 0.96383 0.99123 0.99754 1.20632 0.93046 0.95264 0.89901 1.47833 1.10680 1.59935 1.12842 1.19629 0.94813 0.95104 0.80684 1.21307 1.41045 0.91083 1.02991 0.90770 1.24827 0.95266 0.94688 0.98060 1.69898 1.47909 1.06592 1.29232 0.86891 0.79928 0.79694 0.83458 1.19934 1.21084 1.19072 1.18241 0.82298 0.78941 0.88467 1.90847 1.51439 1.56353 1.41771 1.23172 0.96441 1.03416 0.98402 1.20966 0.92588 0.94717 0.94193 1.20886 1.02290 1.01198 0.92910 1.18557 0.96023 0.92856 0.95484 1.21141 0.92772 0.96992 0.94313 1.20920 0.97942 0.97532 0.96480 1.20991 1.00823 0.90797 1.00045 1.20575 1.01360 0.86677 0.98244 1.98334 1.87761 1.35056 1.84769 1.20838 0.97265 0.97770 0.96026 0.88239 0.88772 0.87685 0.89332 0.90317 0.95394 0.94583 0.92600 0.85143 0.90531 0.90846 0.91018 0.85896 0.85324 0.85647 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.25 9.85 -36.03 -0.35 -2.61 16 3 C 0.14 2.10 5.56 -5.19 -0.03 2.08 16 4 N -0.58 -11.78 2.44 -178.08 -0.43 -12.21 16 5 C 0.22 5.32 4.23 -5.20 -0.02 5.29 16 6 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 7 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 10 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.53 10.50 7.48 -12.97 -0.10 10.40 16 15 O -0.53 -12.11 11.75 5.20 0.06 -12.05 16 16 C -0.19 -2.83 8.87 -37.51 -0.33 -3.16 16 17 C -0.02 -0.30 5.49 -102.20 -0.56 -0.86 16 18 C -0.12 -1.04 10.02 36.00 0.36 -0.68 16 19 C -0.03 -0.44 3.84 -105.06 -0.40 -0.84 16 20 C -0.03 -0.56 6.93 -39.11 -0.27 -0.83 16 21 C -0.11 -1.71 10.03 -39.66 -0.40 -2.11 16 22 C -0.11 -1.57 9.82 -39.43 -0.39 -1.96 16 23 C -0.04 -0.62 6.31 -39.56 -0.25 -0.87 16 24 Cl -0.09 -1.14 28.95 -51.86 -1.50 -2.64 16 25 C -0.10 -1.45 9.56 -39.07 -0.37 -1.83 16 26 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 27 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 30 H 0.08 1.02 6.09 -51.93 -0.32 0.70 16 31 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.13 1.51 6.21 -52.49 -0.33 1.19 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.12 2.11 8.04 -52.49 -0.42 1.69 16 39 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -32.96 363.91 -9.00 -41.95 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.57 Total: 2.08 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.14 Total: -12.98 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.34 Total: -38.88 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.96 -9.00 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.730 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds