Wall clock time and date at job start Tue Mar 31 2020 12:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00078 * 2 1 4 4 N 1.46503 * 109.46764 * 125.00278 * 3 2 1 5 5 C 1.46504 * 120.00036 * 270.00049 * 4 3 2 6 6 C 1.50693 * 109.47166 * 270.00494 * 5 4 3 7 7 H 1.08001 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99901 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99748 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00055 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46915 * 90.00110 * 10 8 6 12 12 H 1.48499 * 109.46959 * 209.99924 * 10 8 6 13 13 H 1.48497 * 109.47125 * 329.99868 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00209 * 4 3 2 15 15 O 1.21690 * 119.99723 * 179.97438 * 14 4 3 16 16 C 1.46423 * 120.00073 * 0.02562 * 14 4 3 17 17 C 1.34800 * 120.00449 * 180.02562 * 16 14 4 18 18 C 1.50697 * 120.00576 * 180.02562 * 17 16 14 19 19 C 1.47215 * 119.99890 * 359.97438 * 17 16 14 20 20 C 1.39867 * 120.16257 * 295.25526 * 19 17 16 21 21 C 1.37870 * 119.85187 * 180.25278 * 20 19 17 22 22 C 1.38401 * 120.18617 * 359.46862 * 21 20 19 23 23 C 1.38495 * 120.33152 * 0.27948 * 22 21 20 24 24 Cl 1.73600 * 119.92837 * 179.97438 * 23 22 21 25 25 C 1.38032 * 120.14638 * 359.97438 * 23 22 21 26 26 H 1.08001 * 119.99747 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99841 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99747 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47232 * 5.00783 * 3 2 1 30 30 H 1.08995 * 109.47658 * 245.00235 * 3 2 1 31 31 H 1.09003 * 109.46982 * 30.00319 * 5 4 3 32 32 H 1.08996 * 109.47205 * 149.99902 * 5 4 3 33 33 H 0.97006 * 119.99506 * 180.02562 * 9 8 6 34 34 H 1.08001 * 119.99978 * 359.97438 * 16 14 4 35 35 H 1.09000 * 109.46748 * 269.99481 * 18 17 16 36 36 H 1.08997 * 109.47491 * 29.99256 * 18 17 16 37 37 H 1.08999 * 109.47751 * 149.99825 * 18 17 16 38 38 H 1.07997 * 120.07124 * 359.97438 * 20 19 17 39 39 H 1.08002 * 119.90998 * 179.75268 * 21 20 19 40 40 H 1.07996 * 119.83766 * 180.25880 * 22 21 20 41 41 H 1.07994 * 120.09752 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8647 2.4249 6 6 2.8443 3.3433 2.4806 7 1 3.3041 3.8367 1.6369 8 6 2.5195 4.0662 3.6089 9 7 2.7690 5.3566 3.6576 10 14 1.7250 3.2127 5.0682 11 1 2.7811 2.7215 5.9894 12 1 0.8491 4.1730 5.7865 13 1 0.9133 2.0653 4.5889 14 6 4.2498 0.8660 0.9823 15 8 5.0226 0.8886 1.9220 16 6 4.6846 0.3339 -0.3106 17 6 5.9406 -0.1325 -0.4597 18 6 6.3883 -0.6796 -1.7905 19 6 6.8753 -0.1062 0.6774 20 6 7.2905 1.1152 1.2177 21 6 8.1701 1.1324 2.2793 22 6 8.6341 -0.0550 2.8178 23 6 8.2239 -1.2689 2.2921 24 17 8.8131 -2.7521 2.9754 25 6 7.3477 -1.3021 1.2261 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6214 1.4027 -0.9313 31 1 1.4889 1.6964 2.5460 32 1 3.0991 1.3600 3.2260 33 1 2.5407 5.8650 4.4516 34 1 3.9988 0.3142 -1.1447 35 1 6.1815 -1.7490 -1.8318 36 1 5.8489 -0.1740 -2.5914 37 1 7.4586 -0.5117 -1.9110 38 1 6.9263 2.0428 0.8015 39 1 8.4944 2.0751 2.6947 40 1 9.3197 -0.0350 3.6520 41 1 7.0287 -2.2490 0.8165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:57 Heat of formation + Delta-G solvation = 12.081798 kcal Electronic energy + Delta-G solvation = -24252.801348 eV Core-core repulsion = 20738.137031 eV Total energy + Delta-G solvation = -3514.664317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12121 -39.86428 -37.61038 -37.09922 -35.86958 -35.00236 -33.71814 -31.73436 -31.17763 -30.44503 -28.53618 -26.86106 -24.91555 -23.88276 -23.48349 -21.44977 -20.67558 -19.52028 -19.08346 -18.22963 -17.72744 -17.07121 -16.50549 -16.27009 -15.96547 -15.88333 -15.41979 -14.90048 -14.87236 -14.67771 -14.38662 -14.19542 -14.02469 -13.89465 -13.56661 -13.46175 -13.11273 -12.98106 -12.88322 -12.53381 -12.50264 -12.34248 -12.26679 -12.23380 -11.95941 -11.76251 -11.72911 -10.84136 -10.71743 -10.31184 -10.19768 -9.80346 -9.31187 -9.18879 -8.34811 -6.38420 -0.04568 0.35812 0.61259 1.15884 1.28962 1.33128 1.35102 1.41656 2.28758 2.42786 2.56060 2.72372 2.99896 3.56993 3.75854 3.92009 4.09667 4.11697 4.21178 4.25416 4.31969 4.47618 4.51605 4.63200 4.73239 4.75190 4.84638 4.86347 4.87658 4.95466 5.08256 5.10060 5.16685 5.34244 5.35512 5.46005 5.49369 5.56460 5.65991 5.73184 5.88415 5.94029 6.25633 6.62455 6.77092 7.22635 7.50744 8.81962 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.004514 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.579460 B = 6201.725642 C = 7541.199647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.179 4.179 3 C 0.132 3.868 4 N -0.594 5.594 5 C 0.232 3.768 6 C -0.528 4.528 7 H 0.031 0.969 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.940 3.060 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.243 1.243 14 C 0.520 3.480 15 O -0.571 6.571 16 C -0.211 4.211 17 C -0.002 4.002 18 C -0.113 4.113 19 C -0.040 4.040 20 C -0.057 4.057 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.049 4.049 24 Cl -0.071 7.071 25 C -0.103 4.103 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.165 0.835 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -16.619 -11.715 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.109 3.891 6 C -0.567 4.567 7 H 0.049 0.951 8 C -0.182 4.182 9 N -0.584 5.584 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.166 1.166 14 C 0.312 3.688 15 O -0.452 6.452 16 C -0.231 4.231 17 C -0.004 4.004 18 C -0.169 4.169 19 C -0.040 4.040 20 C -0.075 4.075 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.075 4.075 24 Cl -0.043 7.043 25 C -0.121 4.121 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.182 0.818 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.856 -16.562 -11.058 20.758 hybrid contribution -0.374 0.553 1.293 1.456 sum 5.482 -16.009 -9.764 19.537 Atomic orbital electron populations 1.24065 0.95537 1.02871 0.98475 1.23323 0.96671 0.98123 1.01710 1.20839 0.92571 0.96298 0.89301 1.47893 1.11979 1.59893 1.12537 1.19185 0.94936 0.92160 0.82807 1.21515 1.40190 0.93302 1.01677 0.95077 1.25736 0.95966 0.95284 1.01223 1.70041 1.49561 1.08353 1.30410 0.85821 0.79117 0.79369 0.79306 1.20401 1.19886 1.16625 1.19123 0.81529 0.78186 0.89969 1.90821 1.52459 1.58227 1.43733 1.23065 0.97888 1.05396 0.96752 1.21436 0.91353 0.92302 0.95288 1.21012 1.02911 1.02515 0.90475 1.18848 0.96286 0.92601 0.96303 1.21122 0.94005 0.97012 0.95389 1.21093 0.98187 0.98455 0.96542 1.21200 1.01053 0.90536 1.00470 1.20752 1.01184 0.87324 0.98246 1.98336 1.87533 1.33871 1.84521 1.21085 0.96907 0.98253 0.95890 0.88386 0.86473 0.86600 0.90841 0.87738 0.94233 0.96719 0.92336 0.81753 0.88108 0.88715 0.90339 0.87964 0.84856 0.83877 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 14.32 67.77 0.97 -2.72 16 2 C -0.18 -4.38 9.85 25.64 0.25 -4.13 16 3 C 0.13 3.98 5.56 85.63 0.48 4.46 16 4 N -0.59 -24.17 2.44 -835.55 -2.04 -26.21 16 5 C 0.23 11.46 4.23 85.63 0.36 11.83 16 6 C -0.53 -31.11 9.94 25.60 0.25 -30.86 16 7 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 8 C 0.02 0.95 5.47 84.66 0.46 1.42 16 9 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 10 Si 0.94 45.27 27.47 68.60 1.88 47.15 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.24 -10.69 6.54 99.48 0.65 -10.03 16 14 C 0.52 20.78 7.48 86.37 0.65 21.43 16 15 O -0.57 -27.24 11.75 -4.32 -0.05 -27.29 16 16 C -0.21 -5.85 8.87 23.61 0.21 -5.64 16 17 C 0.00 -0.04 5.49 -18.29 -0.10 -0.14 16 18 C -0.11 -1.60 10.02 71.23 0.71 -0.89 16 19 C -0.04 -1.20 3.84 -20.15 -0.08 -1.28 16 20 C -0.06 -1.96 6.93 22.58 0.16 -1.81 16 21 C -0.12 -4.01 10.03 22.22 0.22 -3.79 16 22 C -0.11 -3.32 9.82 22.37 0.22 -3.10 16 23 C -0.05 -1.37 6.31 22.28 0.14 -1.23 16 24 Cl -0.07 -1.73 28.95 -2.72 -0.08 -1.81 16 25 C -0.10 -2.84 9.56 22.60 0.22 -2.63 16 26 H 0.10 2.13 7.84 -2.91 -0.02 2.11 16 27 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.07 2.40 7.72 -2.39 -0.02 2.38 16 30 H 0.10 2.54 6.09 -2.39 -0.01 2.52 16 31 H 0.04 1.85 7.13 -2.39 -0.02 1.84 16 32 H 0.01 0.79 6.85 -2.39 -0.02 0.77 16 33 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 34 H 0.17 3.31 6.21 -2.91 -0.02 3.29 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.08 1.06 8.11 -2.39 -0.02 1.04 16 38 H 0.10 3.83 8.04 -2.91 -0.02 3.80 16 39 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -75.39 363.91 6.11 -69.28 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.96 Total: 17.33 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.13 Total: -19.08 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.74 Total: -85.59 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -75.39 6.11 -69.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.363 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds