Wall clock time and date at job start Tue Mar 31 2020 12:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00323 * 2 1 4 4 N 1.46507 * 109.47147 * 124.99848 * 3 2 1 5 5 C 1.46499 * 119.99920 * 274.93198 * 4 3 2 6 6 C 1.50699 * 109.46918 * 269.99781 * 5 4 3 7 7 H 1.07999 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99896 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00402 * 359.97438 * 8 6 5 10 10 Si 1.86811 * 120.00008 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46682 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47009 * 119.99836 * 10 8 6 13 13 H 1.48499 * 109.46972 * 240.00048 * 10 8 6 14 14 C 1.34767 * 119.99687 * 94.92440 * 4 3 2 15 15 O 1.21703 * 119.99979 * 184.75865 * 14 4 3 16 16 C 1.46390 * 120.00390 * 4.76521 * 14 4 3 17 17 C 1.50698 * 120.00000 * 253.84932 * 16 14 4 18 18 C 1.34852 * 119.99991 * 73.84637 * 16 14 4 19 19 C 1.47157 * 120.00015 * 7.58912 * 18 16 14 20 20 C 1.39867 * 120.15545 * 214.44458 * 19 18 16 21 21 C 1.37833 * 119.84314 * 179.97438 * 20 19 18 22 22 C 1.38549 * 120.15427 * 0.02562 * 21 20 19 23 23 Cl 1.73596 * 119.84005 * 179.97438 * 22 21 20 24 24 C 1.38552 * 120.31719 * 0.27199 * 22 21 20 25 25 C 1.37835 * 120.15596 * 359.44876 * 24 22 21 26 26 H 1.07992 * 120.00346 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99828 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00283 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46886 * 5.00475 * 3 2 1 30 30 H 1.08993 * 109.47639 * 245.00357 * 3 2 1 31 31 H 1.08997 * 109.47554 * 29.99361 * 5 4 3 32 32 H 1.09001 * 109.46871 * 149.99991 * 5 4 3 33 33 H 0.96998 * 120.00391 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47092 * 264.97219 * 17 16 14 35 35 H 1.09005 * 109.47237 * 24.96980 * 17 16 14 36 36 H 1.09000 * 109.47335 * 144.96587 * 17 16 14 37 37 H 1.07999 * 119.99386 * 187.58721 * 18 16 14 38 38 H 1.08010 * 120.07829 * 359.95684 * 20 19 18 39 39 H 1.07998 * 119.92301 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.91919 * 179.70296 * 24 22 21 41 41 H 1.08005 * 120.07936 * 180.29288 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5289 1.7635 2.4520 6 6 2.7159 3.2526 2.5883 7 1 3.1391 3.8206 1.7730 8 6 2.3475 3.8898 3.7542 9 7 1.8326 3.1982 4.7472 10 14 2.5800 5.7356 3.9234 11 1 3.1746 6.2761 2.6746 12 1 1.2641 6.3801 4.1651 13 1 3.4866 6.0177 5.0652 14 6 4.2772 0.9592 0.9576 15 8 5.0281 0.8982 1.9134 16 6 4.7683 0.6279 -0.3811 17 6 5.0262 -0.8091 -0.7549 18 6 4.9898 1.6085 -1.2799 19 6 4.8997 3.0183 -0.8678 20 6 4.4159 3.9814 -1.7593 21 6 4.3338 5.3000 -1.3665 22 6 4.7296 5.6724 -0.0920 23 17 4.6233 7.3355 0.3940 24 6 5.2156 4.7248 0.7943 25 6 5.2978 3.4017 0.4170 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3586 2.1317 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 1.4727 1.5183 2.5634 32 1 3.1039 1.2529 3.2244 33 1 1.5732 3.6465 5.5672 34 1 6.0787 -1.0428 -0.5949 35 1 4.4109 -1.4617 -0.1355 36 1 4.7754 -0.9622 -1.8045 37 1 5.2333 1.3591 -2.3021 38 1 4.1077 3.6925 -2.7534 39 1 3.9601 6.0446 -2.0536 40 1 5.5268 5.0230 1.7846 41 1 5.6724 2.6633 1.1105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:45 Heat of formation + Delta-G solvation = 4.924698 kcal Electronic energy + Delta-G solvation = -25336.671673 eV Core-core repulsion = 21821.697001 eV Total energy + Delta-G solvation = -3514.974672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36421 -39.76841 -37.49535 -37.18489 -35.85200 -34.90623 -33.61434 -32.05531 -31.83293 -29.61625 -27.47519 -26.94710 -25.62385 -23.89240 -23.12746 -22.11016 -20.93354 -19.23555 -18.51934 -18.30831 -17.39090 -17.26962 -16.62681 -16.44772 -16.08057 -15.71235 -15.42712 -14.71315 -14.68946 -14.55107 -14.29075 -14.17726 -14.02242 -13.76383 -13.69027 -13.31195 -13.15433 -12.93776 -12.80588 -12.65699 -12.61248 -12.35762 -12.21898 -12.19383 -12.07866 -11.71785 -11.49603 -10.77099 -10.62173 -10.48211 -10.22283 -9.91976 -9.43587 -9.01711 -8.17989 -6.28292 -0.24922 0.41154 1.05178 1.16509 1.32659 1.34275 1.37549 1.52059 1.85211 2.36780 2.57914 2.77806 3.13681 3.66228 3.78020 3.88358 3.96035 4.10875 4.26014 4.33625 4.37771 4.45106 4.53759 4.66678 4.76902 4.84315 4.86338 4.98398 5.02302 5.07153 5.09344 5.19413 5.28271 5.32189 5.38013 5.43521 5.60059 5.72024 5.73013 5.80819 5.89844 5.98247 6.13065 6.74200 6.84603 7.32771 7.47891 8.89700 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.007054 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.546068 B = 3968.424072 C = 5534.929734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C 0.135 3.865 4 N -0.582 5.582 5 C 0.263 3.737 6 C -0.518 4.518 7 H 0.077 0.923 8 C 0.011 3.989 9 N -0.933 5.933 10 Si 0.932 3.068 11 H -0.234 1.234 12 H -0.283 1.283 13 H -0.294 1.294 14 C 0.544 3.456 15 O -0.602 6.602 16 C -0.152 4.152 17 C -0.097 4.097 18 C -0.073 4.073 19 C -0.075 4.075 20 C -0.078 4.078 21 C -0.114 4.114 22 C -0.040 4.040 23 Cl -0.083 7.083 24 C -0.114 4.114 25 C -0.100 4.100 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.015 0.985 32 H -0.006 1.006 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.187 0.813 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.104 0.896 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -2.127 -20.743 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C 0.013 3.987 4 N -0.310 5.310 5 C 0.142 3.858 6 C -0.557 4.557 7 H 0.096 0.904 8 C -0.187 4.187 9 N -0.575 5.575 10 Si 0.757 3.243 11 H -0.157 1.157 12 H -0.209 1.209 13 H -0.220 1.220 14 C 0.335 3.665 15 O -0.486 6.486 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.091 4.091 19 C -0.075 4.075 20 C -0.096 4.096 21 C -0.133 4.133 22 C -0.066 4.066 23 Cl -0.054 7.054 24 C -0.133 4.133 25 C -0.119 4.119 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.033 0.967 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.204 0.796 38 H 0.197 0.803 39 H 0.177 0.823 40 H 0.122 0.878 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.868 -1.964 -20.034 20.333 hybrid contribution -0.056 1.183 1.899 2.238 sum 2.812 -0.781 -18.135 18.369 Atomic orbital electron populations 1.24017 0.95561 1.02725 0.98656 1.23313 0.96681 0.98311 1.01568 1.20788 0.92470 0.95884 0.89573 1.48077 1.09109 1.62534 1.11271 1.18707 0.93180 0.94347 0.79567 1.21889 1.39938 0.93142 1.00744 0.90450 1.25671 0.95235 1.02233 0.95537 1.70072 1.44359 1.37305 1.05725 0.85858 0.77732 0.81195 0.79479 1.15680 1.20917 1.22028 1.18973 0.81881 0.75689 0.90006 1.90765 1.56887 1.56283 1.44632 1.22114 1.02372 0.99533 0.91513 1.20727 1.02544 0.88307 1.03754 1.22311 0.98349 0.88290 1.00128 1.19370 0.99996 0.95177 0.92986 1.21596 0.96906 0.90470 1.00607 1.21246 1.00228 0.98089 0.93691 1.21193 1.04217 0.84903 0.96315 1.98339 1.96896 1.17971 1.92208 1.20813 1.00618 0.93217 0.98647 1.21697 0.98613 0.95295 0.96258 0.86543 0.88590 0.86846 0.91367 0.87413 0.96718 0.98824 0.93076 0.90149 0.92858 0.86789 0.79558 0.80262 0.82253 0.87764 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 14.32 67.78 0.97 -3.23 16 2 C -0.18 -4.89 9.84 25.65 0.25 -4.64 16 3 C 0.13 4.27 5.79 85.63 0.50 4.77 16 4 N -0.58 -24.34 2.44 -835.57 -2.04 -26.38 16 5 C 0.26 14.20 5.22 85.63 0.45 14.64 16 6 C -0.52 -29.03 9.39 25.60 0.24 -28.79 16 7 H 0.08 4.15 5.21 -2.91 -0.02 4.14 16 8 C 0.01 0.65 5.46 84.65 0.46 1.12 16 9 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 10 Si 0.93 45.54 29.54 68.60 2.03 47.57 16 11 H -0.23 -10.63 6.89 99.48 0.69 -9.95 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 14 C 0.54 22.27 4.16 86.37 0.36 22.63 16 15 O -0.60 -31.18 15.02 -4.36 -0.07 -31.25 16 16 C -0.15 -4.21 4.34 -18.52 -0.08 -4.29 16 17 C -0.10 -1.89 10.03 71.24 0.71 -1.18 16 18 C -0.07 -1.59 8.24 23.84 0.20 -1.40 16 19 C -0.08 -2.09 5.36 -20.15 -0.11 -2.20 16 20 C -0.08 -1.69 9.79 22.57 0.22 -1.47 16 21 C -0.11 -2.84 9.81 22.25 0.22 -2.62 16 22 C -0.04 -1.30 6.33 22.42 0.14 -1.16 16 23 Cl -0.08 -2.63 28.73 -2.72 -0.08 -2.71 16 24 C -0.11 -4.37 8.32 22.25 0.19 -4.19 16 25 C -0.10 -3.78 7.47 22.57 0.17 -3.61 16 26 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 27 H 0.10 2.38 7.84 -2.91 -0.02 2.36 16 28 H 0.11 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.07 2.34 7.76 -2.38 -0.02 2.32 16 30 H 0.11 2.73 5.55 -2.39 -0.01 2.72 16 31 H 0.01 0.83 8.07 -2.39 -0.02 0.81 16 32 H -0.01 -0.40 7.36 -2.39 -0.02 -0.42 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.17 8.08 -2.38 -0.02 1.15 16 36 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16 37 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.11 5.12 5.01 -2.91 -0.01 5.11 16 Total: -1.00 -76.51 361.75 6.02 -70.49 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.01 Total: 15.36 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.88 Total: -15.61 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.75 Total: -83.85 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.07 Total: -31.25 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -76.51 6.02 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.413 kcal (2) G-P(sol) polarization free energy of solvation -76.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds