Wall clock time and date at job start Tue Mar 31 2020 12:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 C 1.52998 * 109.47235 * 120.00098 * 2 1 3 5 5 N 1.46501 * 109.47374 * 175.00090 * 4 2 1 6 6 C 1.46496 * 120.00219 * 92.48198 * 5 4 2 7 7 C 1.50697 * 109.46935 * 95.30229 * 6 5 4 8 8 H 1.07998 * 120.00381 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99858 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99877 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47410 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47091 * 120.00659 * 11 9 7 14 14 H 1.48505 * 109.46993 * 240.00337 * 11 9 7 15 15 C 1.34781 * 119.99676 * 272.48819 * 5 4 2 16 16 O 1.21500 * 120.00301 * 5.33281 * 15 5 4 17 17 C 1.48211 * 119.99674 * 185.33662 * 15 5 4 18 18 N 1.32973 * 120.61472 * 5.50745 * 17 15 5 19 19 C 1.31772 * 120.90688 * 179.76276 * 18 17 15 20 20 N 1.31188 * 122.64651 * 0.52781 * 19 18 17 21 21 C 1.34518 * 121.10571 * 359.74056 * 20 19 18 22 22 C 1.44795 * 130.27068 * 180.02562 * 21 20 19 23 23 C 1.32207 * 114.90933 * 179.97438 * 22 21 20 24 24 S 1.75361 * 111.45289 * 359.97438 * 23 22 21 25 25 C 1.40447 * 120.61382 * 185.78275 * 17 15 5 26 26 H 1.09002 * 109.46772 * 299.99839 * 1 2 3 27 27 H 1.09007 * 109.47044 * 59.99983 * 1 2 3 28 28 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47192 * 240.00271 * 2 1 3 30 30 H 1.08999 * 109.47578 * 60.00130 * 3 2 1 31 31 H 1.09000 * 109.47707 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47638 * 299.99948 * 3 2 1 33 33 H 1.08999 * 109.46780 * 54.99721 * 4 2 1 34 34 H 1.09001 * 109.47064 * 295.00064 * 4 2 1 35 35 H 1.09003 * 109.47538 * 215.30754 * 6 5 4 36 36 H 1.08998 * 109.46940 * 335.30497 * 6 5 4 37 37 H 0.96994 * 119.99780 * 179.97438 * 10 9 7 38 38 H 1.08004 * 118.67715 * 180.24294 * 19 18 17 39 39 H 1.07999 * 122.54382 * 0.02562 * 22 21 20 40 40 H 1.07996 * 124.27033 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2069 1.8091 7 6 4.7249 -0.2278 3.1981 8 1 4.3860 -1.1788 3.5817 9 6 5.5159 0.5881 3.9790 10 7 5.9290 1.7460 3.5117 11 14 6.0006 0.0490 5.7005 12 1 5.4120 -1.2841 5.9859 13 1 7.4803 -0.0331 5.7952 14 1 5.4953 1.0356 6.6888 15 6 4.0758 -1.8737 0.5674 16 8 3.3883 -2.6789 -0.0286 17 6 5.5476 -2.0432 0.6094 18 7 6.3017 -1.2337 1.3470 19 6 7.6103 -1.3821 1.3922 20 7 8.2406 -2.3138 0.7171 21 6 7.5701 -3.1806 -0.0630 22 6 8.0557 -4.2709 -0.8828 23 6 7.1185 -4.9383 -1.5340 24 16 5.5228 -4.2901 -1.2037 25 6 6.1721 -3.0584 -0.1336 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 5.2321 0.3564 1.2092 36 1 3.7748 1.1406 1.8645 37 1 6.4851 2.3202 4.0612 38 1 8.1876 -0.7067 2.0062 39 1 9.1039 -4.5205 -0.9561 40 1 7.3111 -5.7772 -2.1861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:14 Heat of formation + Delta-G solvation = 48.213357 kcal Electronic energy + Delta-G solvation = -25097.047419 eV Core-core repulsion = 21618.286342 eV Total energy + Delta-G solvation = -3478.761077 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78179 -39.06732 -36.22167 -35.92918 -34.10826 -32.70248 -32.21551 -30.27667 -27.65616 -26.82792 -26.35811 -24.65183 -24.11516 -22.84478 -21.50501 -20.24603 -19.07388 -17.98570 -17.08792 -16.59438 -16.32055 -15.61963 -15.22647 -14.97982 -14.51611 -14.41975 -14.25554 -14.18246 -13.85375 -13.25450 -12.94392 -12.64372 -12.41632 -12.23554 -12.05518 -11.96854 -11.64996 -11.38329 -11.05318 -11.00812 -10.91345 -10.78073 -10.57335 -10.40664 -10.30136 -10.16330 -10.08934 -9.68838 -9.54644 -9.09486 -8.57442 -8.27879 -7.90534 -7.68021 -6.06932 -4.03683 0.59803 0.92272 1.57838 2.11905 2.23492 3.24372 3.32273 3.34087 3.39418 3.59428 4.07908 4.25781 4.38131 4.55600 4.73029 5.00452 5.19840 5.22919 5.26243 5.30093 5.42840 5.54851 5.67167 5.84644 5.89877 5.93045 5.98692 6.08111 6.15508 6.21593 6.30228 6.38032 6.57134 6.62352 6.71653 6.80331 7.16463 7.42554 7.57712 7.84267 8.16548 8.20768 8.44215 8.72637 8.94150 9.53533 11.01052 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.006853 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.450421 B = 4084.879328 C = 6408.353749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.147 4.147 4 C 0.123 3.877 5 N -0.563 5.563 6 C 0.233 3.767 7 C -0.488 4.488 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.883 3.117 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.559 3.441 16 O -0.555 6.555 17 C 0.177 3.823 18 N -0.394 5.394 19 C 0.290 3.710 20 N -0.488 5.488 21 C 0.147 3.853 22 C -0.117 4.117 23 C -0.196 4.196 24 S 0.186 5.814 25 C -0.223 4.223 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.202 0.798 39 H 0.152 0.848 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -6.870 -8.940 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.000 4.000 5 N -0.291 5.291 6 C 0.114 3.886 7 C -0.528 4.528 8 H 0.070 0.930 9 C -0.133 4.133 10 N -0.528 5.528 11 Si 0.711 3.289 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.344 3.656 16 O -0.435 6.435 17 C 0.017 3.983 18 N -0.110 5.110 19 C -0.001 4.001 20 N -0.203 5.203 21 C 0.001 3.999 22 C -0.148 4.148 23 C -0.333 4.333 24 S 0.447 5.553 25 C -0.344 4.344 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.169 0.831 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.598 -6.871 -9.103 11.697 hybrid contribution 1.563 -0.290 1.286 2.044 sum -1.035 -7.161 -7.818 10.652 Atomic orbital electron populations 1.21746 0.95146 1.01482 1.01495 1.21480 0.95397 0.96937 0.99237 1.21903 1.02198 0.95314 1.00975 1.21504 0.80010 1.00801 0.97660 1.48233 1.06862 1.23000 1.51011 1.20008 0.90247 0.84720 0.93637 1.21249 1.30010 1.03743 0.97778 0.93005 1.24733 0.95929 0.94952 0.97709 1.69923 1.35897 1.10154 1.36846 0.86688 0.78428 0.78646 0.85148 1.20101 1.20933 1.21056 1.17707 0.85300 0.82318 0.80270 1.90677 1.62769 1.44895 1.45175 1.21237 0.95568 0.90029 0.91425 1.69790 1.06376 1.21984 1.12832 1.25115 0.88661 0.92638 0.93639 1.68223 1.41172 1.04070 1.06857 1.20311 0.87921 0.95503 0.96125 1.20447 1.01135 0.94888 0.98319 1.25731 0.98511 1.04607 1.04481 1.84709 1.03328 1.24633 1.42631 1.24292 0.99394 1.04236 1.06491 0.92660 0.92918 0.92796 0.91119 0.92558 0.91753 0.93594 0.91022 0.89920 0.91732 0.94532 0.92941 0.78138 0.83091 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 2 C -0.11 -1.71 3.12 -90.62 -0.28 -1.99 16 3 C -0.15 -2.26 8.25 37.16 0.31 -1.95 16 4 C 0.12 2.18 4.78 -4.04 -0.02 2.17 16 5 N -0.56 -11.69 2.25 -176.04 -0.40 -12.09 16 6 C 0.23 5.37 3.66 -5.20 -0.02 5.35 16 7 C -0.49 -12.31 7.46 -34.44 -0.26 -12.57 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.48 13.29 55.43 0.74 -22.74 16 11 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.56 11.89 7.60 -12.16 -0.09 11.79 16 16 O -0.55 -11.86 14.91 5.37 0.08 -11.78 16 17 C 0.18 3.72 6.60 -82.44 -0.54 3.17 16 18 N -0.39 -8.51 5.00 -11.12 -0.06 -8.57 16 19 C 0.29 5.68 12.22 -92.69 -1.13 4.54 16 20 N -0.49 -9.08 10.49 -11.76 -0.12 -9.20 16 21 C 0.15 2.58 7.23 -83.24 -0.60 1.97 16 22 C -0.12 -1.57 10.39 -38.92 -0.40 -1.97 16 23 C -0.20 -2.29 11.03 28.81 0.32 -1.97 16 24 S 0.19 2.80 21.61 -107.50 -2.32 0.48 16 25 C -0.22 -4.16 6.35 -37.89 -0.24 -4.40 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.13 6.18 -51.93 -0.32 0.81 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 34 H 0.08 1.44 8.05 -51.93 -0.42 1.03 16 35 H 0.07 1.59 5.75 -51.93 -0.30 1.30 16 36 H 0.04 0.88 6.51 -51.93 -0.34 0.54 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.20 3.61 8.06 -52.48 -0.42 3.19 16 39 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -28.43 344.95 -9.75 -38.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.12 Total: 0.75 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.73 Total: 4.40 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.16 Total: -52.60 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.32 Total: 0.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.43 -9.75 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.389 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds