Wall clock time and date at job start Tue Mar 31 2020 12:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47187 * 94.67194 * 3 2 1 5 5 C 1.53004 * 109.47268 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46916 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46654 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47123 * 184.92635 * 7 6 5 9 9 O 1.21279 * 119.99781 * 354.93761 * 8 7 6 10 10 N 1.34780 * 120.00031 * 174.93379 * 8 7 6 11 11 C 1.37127 * 120.00109 * 3.54432 * 10 8 7 12 12 H 1.08008 * 119.99950 * 305.41433 * 11 10 8 13 13 C 1.38885 * 120.00444 * 125.41538 * 11 10 8 14 14 N 1.31424 * 120.00434 * 181.53313 * 13 11 10 15 15 Si 1.86804 * 119.99552 * 1.52870 * 13 11 10 16 16 H 1.48497 * 109.47123 * 95.26567 * 15 13 11 17 17 H 1.48502 * 109.46764 * 215.26053 * 15 13 11 18 18 H 1.48503 * 109.47245 * 335.25733 * 15 13 11 19 19 C 1.39812 * 119.99539 * 183.53619 * 10 8 7 20 20 C 1.38953 * 120.06896 * 351.99278 * 19 10 8 21 21 C 1.38068 * 119.93650 * 180.25157 * 20 19 10 22 22 C 1.38421 * 120.06440 * 359.46979 * 21 20 19 23 23 Cl 1.73594 * 119.93865 * 180.29955 * 22 21 20 24 24 C 1.38424 * 120.12734 * 0.27413 * 22 21 20 25 25 C 1.38072 * 120.06246 * 359.97438 * 24 22 21 26 26 H 4.44652 * 5.63299 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47231 * 334.67239 * 3 2 1 28 28 H 1.09001 * 109.47278 * 214.67377 * 3 2 1 29 29 H 1.09008 * 109.46812 * 60.00162 * 4 3 2 30 30 H 1.09001 * 109.47161 * 300.00254 * 4 3 2 31 31 H 1.08994 * 109.46845 * 60.00403 * 5 4 3 32 32 H 1.09001 * 109.46895 * 300.00602 * 5 4 3 33 33 H 1.08994 * 109.47355 * 60.00322 * 6 5 4 34 34 H 1.08995 * 109.46878 * 299.99591 * 6 5 4 35 35 H 1.09006 * 109.47418 * 64.93250 * 7 6 5 36 36 H 1.08998 * 109.47854 * 304.92937 * 7 6 5 37 37 H 0.96999 * 119.99883 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.03293 * 0.02562 * 20 19 10 39 39 H 1.07996 * 119.96908 * 179.75037 * 21 20 19 40 40 H 1.07997 * 119.96589 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.03066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.1184 -1.4377 5 6 4.6860 0.1197 -1.4376 6 6 5.1959 0.2381 -2.8753 7 6 6.7259 0.2388 -2.8753 8 6 7.2282 0.4765 -4.2761 9 8 6.4439 0.5387 -5.1991 10 7 8.5489 0.6202 -4.5032 11 6 9.4414 0.4778 -3.4719 12 1 9.3281 1.0678 -2.5743 13 6 10.4911 -0.4250 -3.5814 14 7 11.3288 -0.5834 -2.5813 15 14 10.7121 -1.4144 -5.1505 16 1 11.6856 -0.7268 -6.0362 17 1 11.2196 -2.7688 -4.8142 18 1 9.4066 -1.5341 -5.8482 19 6 9.0089 0.9142 -5.7903 20 6 8.1290 0.8948 -6.8655 21 6 8.5873 1.1805 -8.1362 22 6 9.9197 1.4967 -8.3380 23 17 10.4908 1.8630 -9.9359 24 6 10.7975 1.5220 -7.2680 25 6 10.3460 1.2321 -5.9958 26 1 -1.0500 0.0002 0.0001 27 1 3.0098 -0.9280 0.4396 28 1 3.0090 0.8460 0.5846 29 1 2.7922 1.0472 -1.8773 30 1 2.7930 -0.7269 -2.0223 31 1 5.0501 -0.8088 -0.9979 32 1 5.0486 0.9652 -0.8530 33 1 4.8319 1.1667 -3.3147 34 1 4.8334 -0.6073 -3.4601 35 1 7.0897 -0.7245 -2.5176 36 1 7.0890 1.0304 -2.2199 37 1 12.0617 -1.2142 -2.6577 38 1 7.0882 0.6530 -6.7079 39 1 7.9046 1.1617 -8.9728 40 1 11.8365 1.7694 -7.4284 41 1 11.0312 1.2524 -5.1614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843611245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:31 Heat of formation + Delta-G solvation = 21.667868 kcal Electronic energy + Delta-G solvation = -23514.288306 eV Core-core repulsion = 20000.039673 eV Total energy + Delta-G solvation = -3514.248634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90953 -39.55442 -37.67546 -37.24914 -36.71458 -34.79310 -34.16382 -32.25880 -31.98443 -30.58984 -28.13474 -27.14903 -24.55360 -23.64908 -22.83794 -21.81052 -21.08031 -19.82024 -18.85947 -18.17664 -17.78226 -17.54361 -16.97343 -16.31406 -16.01191 -15.74332 -15.31091 -15.07339 -15.03263 -14.81526 -14.49241 -14.38958 -14.27582 -14.13829 -13.57045 -13.26216 -13.06492 -12.93630 -12.84594 -12.43652 -12.31014 -12.28764 -12.00023 -11.96499 -11.84684 -11.79131 -11.36705 -11.20645 -10.99900 -10.93658 -10.77833 -10.17485 -9.88178 -8.87212 -8.52885 -6.51633 0.13558 0.32160 1.18988 1.22092 1.30932 1.38077 1.75782 1.91296 1.95310 2.11027 2.42223 2.65035 2.91898 3.53147 3.78609 3.95966 3.99215 4.08217 4.11265 4.29357 4.37674 4.40058 4.47315 4.63457 4.66062 4.78406 4.82074 4.94548 4.96648 5.03247 5.07338 5.12711 5.15221 5.26120 5.30881 5.36753 5.40770 5.47943 5.49085 5.57452 5.79930 6.02594 6.24600 6.74724 6.82008 7.18186 7.50930 8.49140 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003019 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.064746 B = 9273.350774 C =10698.733060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.216 4.216 3 C -0.015 4.015 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.096 4.096 7 C -0.111 4.111 8 C 0.492 3.508 9 O -0.569 6.569 10 N -0.424 5.424 11 C -0.356 4.356 12 H 0.098 0.902 13 C 0.060 3.940 14 N -0.885 5.885 15 Si 0.906 3.094 16 H -0.242 1.242 17 H -0.290 1.290 18 H -0.276 1.276 19 C 0.142 3.858 20 C -0.190 4.190 21 C -0.087 4.087 22 C -0.082 4.082 23 Cl -0.070 7.070 24 C -0.089 4.089 25 C -0.168 4.168 26 H 0.242 0.758 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.284 0.716 38 H 0.181 0.819 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 1.409 -0.717 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.216 4.216 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.134 4.134 7 C -0.151 4.151 8 C 0.286 3.714 9 O -0.453 6.453 10 N -0.133 5.133 11 C -0.483 4.483 12 H 0.115 0.885 13 C -0.147 4.147 14 N -0.520 5.520 15 Si 0.733 3.267 16 H -0.166 1.166 17 H -0.218 1.218 18 H -0.201 1.201 19 C 0.045 3.955 20 C -0.210 4.210 21 C -0.106 4.106 22 C -0.110 4.110 23 Cl -0.041 7.041 24 C -0.108 4.108 25 C -0.189 4.189 26 H 0.258 0.742 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.775 1.366 -1.105 9.932 hybrid contribution 0.623 -0.478 -0.626 1.004 sum -9.153 0.889 -1.730 9.357 Atomic orbital electron populations 1.25697 0.96979 1.00826 1.00156 1.23840 0.95728 1.00900 1.01140 1.18850 0.83919 1.04336 0.98082 1.21454 0.95220 1.02259 0.95541 1.21552 0.94615 1.03331 0.95443 1.21313 0.92118 1.02247 0.97745 1.21454 0.97040 1.04823 0.91752 1.21811 0.81145 0.75555 0.92901 1.90176 1.56370 1.53369 1.45359 1.41699 1.06597 1.59099 1.05918 1.18864 1.09053 1.23937 0.96403 0.88491 1.25783 0.95299 0.95372 0.98291 1.69674 1.15483 1.35165 1.31657 0.86465 0.80027 0.78632 0.81619 1.16590 1.21785 1.20097 1.18883 0.93861 0.95731 0.87025 1.22813 1.03765 1.03569 0.90805 1.21221 0.93792 0.98039 0.97521 1.20880 0.94629 1.09171 0.86285 1.98309 1.89296 1.93421 1.23114 1.20972 1.00267 0.99162 0.90420 1.20963 0.95181 1.04764 0.98018 0.74178 0.88556 0.88518 0.92119 0.92127 0.90757 0.90715 0.92372 0.92367 0.88573 0.88519 0.90598 0.80323 0.83034 0.83451 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.93 19.25 74.32 1.43 -2.50 16 2 C -0.22 -4.41 13.34 31.12 0.42 -4.00 16 3 C -0.02 -0.27 5.70 28.79 0.16 -0.10 16 4 C -0.11 -2.08 5.17 30.59 0.16 -1.92 16 5 C -0.11 -2.33 5.21 30.60 0.16 -2.17 16 6 C -0.10 -2.67 4.52 30.59 0.14 -2.53 16 7 C -0.11 -3.75 4.53 29.85 0.14 -3.62 16 8 C 0.49 20.78 7.57 87.66 0.66 21.44 16 9 O -0.57 -24.90 12.38 -3.03 -0.04 -24.94 16 10 N -0.42 -19.46 2.30 -458.88 -1.06 -20.51 16 11 C -0.36 -17.28 8.01 84.02 0.67 -16.60 16 12 H 0.10 4.91 7.70 -2.91 -0.02 4.89 16 13 C 0.06 2.99 4.61 84.91 0.39 3.38 16 14 N -0.89 -45.87 13.96 21.65 0.30 -45.57 16 15 Si 0.91 41.49 23.84 68.60 1.64 43.13 16 16 H -0.24 -10.47 6.15 99.48 0.61 -9.85 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 18 H -0.28 -13.41 6.47 99.48 0.64 -12.76 16 19 C 0.14 6.35 4.13 38.21 0.16 6.51 16 20 C -0.19 -7.86 9.03 22.40 0.20 -7.66 16 21 C -0.09 -3.05 9.82 22.27 0.22 -2.84 16 22 C -0.08 -2.81 6.32 22.36 0.14 -2.67 16 23 Cl -0.07 -1.98 28.95 -2.72 -0.08 -2.06 16 24 C -0.09 -3.25 9.55 22.27 0.21 -3.04 16 25 C -0.17 -7.14 5.59 22.40 0.13 -7.01 16 26 H 0.24 2.45 7.80 -4.42 -0.03 2.42 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.69 8.03 -2.39 -0.02 1.68 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.10 3.13 7.75 -2.39 -0.02 3.12 16 37 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.18 7.72 4.57 -59.47 -0.27 7.45 16 39 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.13 5.99 5.68 -2.91 -0.02 5.98 16 Total: -1.00 -56.53 354.64 6.76 -49.77 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.61 Total: 25.50 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 5.39 Total: -25.32 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.75 Total: -66.09 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.64 Total: 43.13 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -56.53 6.76 -49.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843611245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.442 kcal (2) G-P(sol) polarization free energy of solvation -56.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds