Wall clock time and date at job start Tue Mar 31 2020 12:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46704 * 213.91777 * 3 2 1 5 5 C 1.37100 * 120.00211 * 273.30070 * 4 3 2 6 6 H 1.07999 * 120.00632 * 183.45264 * 5 4 3 7 7 C 1.38954 * 119.99912 * 3.45736 * 5 4 3 8 8 N 1.31414 * 120.00059 * 23.76857 * 7 5 4 9 9 Si 1.86798 * 120.00155 * 203.77595 * 7 5 4 10 10 H 1.48501 * 109.46826 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47223 * 119.99596 * 9 7 5 12 12 H 1.48494 * 109.47098 * 239.99666 * 9 7 5 13 13 C 1.34779 * 120.00135 * 93.30427 * 4 3 2 14 14 O 1.21285 * 119.99716 * 5.04092 * 13 4 3 15 15 C 1.50696 * 120.00129 * 185.04509 * 13 4 3 16 16 H 1.09003 * 109.47252 * 321.63569 * 15 13 4 17 17 C 1.53009 * 109.47195 * 81.63146 * 15 13 4 18 18 C 1.52993 * 109.47067 * 182.85719 * 17 15 13 19 19 C 1.53000 * 109.47199 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47411 * 201.63338 * 15 13 4 21 21 C 1.38234 * 119.99011 * 119.99751 * 20 15 13 22 22 C 1.38209 * 120.01532 * 179.97438 * 21 20 15 23 23 C 1.38356 * 119.98756 * 0.02562 * 22 21 20 24 24 Cl 1.73594 * 120.01510 * 179.97438 * 23 22 21 25 25 C 1.38351 * 119.97078 * 0.27881 * 23 22 21 26 26 C 1.38222 * 119.98646 * 359.39893 * 25 23 22 27 27 H 4.40642 * 5.51485 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46563 * 93.92187 * 3 2 1 29 29 H 1.08990 * 109.47427 * 333.91706 * 3 2 1 30 30 H 0.97000 * 119.99957 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47063 * 302.85895 * 17 15 13 32 32 H 1.08999 * 109.46846 * 62.85904 * 17 15 13 33 33 H 1.08996 * 109.47322 * 300.00017 * 18 17 15 34 34 H 1.09004 * 109.47592 * 60.00462 * 18 17 15 35 35 H 1.09003 * 109.47351 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47070 * 300.00260 * 19 18 17 37 37 H 1.09006 * 109.47093 * 60.00081 * 19 18 17 38 38 H 1.08003 * 119.99033 * 0.02562 * 21 20 15 39 39 H 1.07998 * 120.00819 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00610 * 179.72282 * 25 23 22 41 41 H 1.07996 * 119.99382 * 180.32096 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1471 0.7707 5 6 3.2972 2.3638 0.1605 6 1 3.7092 3.1947 0.7140 7 6 2.9326 2.5282 -1.1703 8 7 2.0368 1.7321 -1.7093 9 14 3.7161 3.8808 -2.1931 10 1 4.6864 4.6336 -1.3583 11 1 4.4224 3.2787 -3.3523 12 1 2.6619 4.8055 -2.6816 13 6 3.4218 1.0057 2.0798 14 8 3.3652 -0.0893 2.5983 15 6 3.8141 2.2080 2.8991 16 1 4.4437 2.8661 2.3003 17 6 2.5556 2.9623 3.3330 18 6 2.9561 4.2215 4.1042 19 6 1.6976 4.9761 4.5374 20 6 4.5756 1.7578 4.1192 21 6 5.8721 2.1915 4.3235 22 6 6.5707 1.7794 5.4425 23 6 5.9724 0.9320 6.3581 24 17 6.8495 0.4134 7.7635 25 6 4.6769 0.4933 6.1498 26 6 3.9769 0.9115 5.0338 27 1 -1.0503 -0.0002 -0.0003 28 1 3.0092 0.0711 -1.0253 29 1 3.0098 -0.9221 0.4518 30 1 1.7821 1.8470 -2.6382 31 1 1.9789 3.2438 2.4520 32 1 1.9504 2.3209 3.9737 33 1 3.5328 3.9400 4.9852 34 1 3.5613 4.8629 3.4635 35 1 1.9830 5.8730 5.0873 36 1 1.1213 5.2576 3.6562 37 1 1.0920 4.3349 5.1780 38 1 6.3390 2.8533 3.6090 39 1 7.5835 2.1186 5.6023 40 1 4.2109 -0.1717 6.8619 41 1 2.9639 0.5731 4.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847177312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:53 Heat of formation + Delta-G solvation = 36.907470 kcal Electronic energy + Delta-G solvation = -24612.317995 eV Core-core repulsion = 21098.730200 eV Total energy + Delta-G solvation = -3513.587795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85229 -38.31911 -36.44713 -35.33306 -34.95616 -32.00572 -31.68927 -31.29354 -30.78812 -28.43279 -26.53067 -24.97394 -23.83511 -22.65253 -21.68020 -20.40228 -19.11722 -17.91772 -16.89475 -16.52454 -16.31328 -15.22504 -15.00903 -14.60144 -14.43630 -14.33181 -14.06671 -13.50001 -13.31144 -13.23633 -13.07953 -12.89163 -12.35423 -12.12460 -11.96391 -11.78970 -11.56216 -11.40821 -11.25061 -11.11244 -10.99808 -10.72087 -10.69557 -10.51009 -10.47367 -10.33056 -10.15379 -9.41743 -9.35281 -8.79161 -8.72479 -8.46303 -8.16675 -8.06325 -6.47467 -3.96560 1.41381 1.59474 2.27554 3.02200 3.15678 3.18012 3.62117 3.79456 3.98951 4.10952 4.25075 4.80597 4.87083 5.06203 5.10646 5.12801 5.31940 5.38435 5.43102 5.61641 5.66888 5.69347 5.79303 5.91275 5.98040 6.08161 6.11112 6.18678 6.23058 6.30478 6.39584 6.45057 6.51682 6.60307 6.67979 6.76364 6.95075 7.00287 7.09478 7.15582 7.32466 7.53849 8.22654 8.93902 8.95996 9.36141 9.75981 10.50101 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.003938 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.638775 B = 7107.619244 C = 7432.193207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.093 4.093 3 C 0.234 3.766 4 N -0.434 5.434 5 C -0.343 4.343 6 H 0.106 0.894 7 C 0.040 3.960 8 N -0.849 5.849 9 Si 0.914 3.086 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.462 3.538 14 O -0.600 6.600 15 C -0.056 4.056 16 H 0.098 0.902 17 C -0.100 4.100 18 C -0.121 4.121 19 C -0.150 4.150 20 C -0.044 4.044 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.042 4.042 24 Cl -0.089 7.089 25 C -0.118 4.118 26 C -0.063 4.063 27 H 0.197 0.803 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.270 0.730 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 3.425 9.743 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.094 4.094 3 C 0.112 3.888 4 N -0.151 5.151 5 C -0.470 4.470 6 H 0.123 0.877 7 C -0.166 4.166 8 N -0.485 5.485 9 Si 0.740 3.260 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.251 3.749 14 O -0.486 6.486 15 C -0.077 4.077 16 H 0.116 0.884 17 C -0.138 4.138 18 C -0.158 4.158 19 C -0.207 4.207 20 C -0.045 4.045 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.068 4.068 24 Cl -0.060 7.060 25 C -0.136 4.136 26 C -0.082 4.082 27 H 0.214 0.786 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.016 2.819 9.882 11.033 hybrid contribution 0.080 0.744 -0.725 1.041 sum 4.095 3.562 9.157 10.645 Atomic orbital electron populations 1.24182 0.95310 1.04652 1.05735 1.23146 0.94281 0.96279 0.95728 1.18306 0.84127 0.88324 0.98045 1.43743 1.55025 1.09615 1.06714 1.19703 1.42690 0.89705 0.94904 0.87652 1.25212 0.95101 0.98644 0.97692 1.70175 1.25270 1.38609 1.14475 0.86079 0.79363 0.80502 0.80034 1.19176 1.20446 1.20835 1.19748 0.83521 0.89500 0.82155 1.90544 1.59791 1.27236 1.71066 1.20160 0.97622 0.96926 0.92959 0.88422 1.21474 0.95967 0.95601 1.00783 1.21529 0.97714 0.96645 0.99953 1.21752 0.98173 0.99679 1.01140 1.19729 0.93749 0.95820 0.95153 1.21014 0.93986 1.00388 0.97029 1.20873 1.00151 0.98468 0.94218 1.20837 0.93731 1.01628 0.90620 1.98334 1.76450 1.90108 1.41152 1.21002 0.92873 1.00902 0.98852 1.21024 1.00699 0.94765 0.91669 0.78623 0.86935 0.91297 0.91919 0.90022 0.92084 0.92219 0.91991 0.93233 0.92630 0.93022 0.85342 0.85536 0.85547 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.18 19.25 29.55 0.57 -5.61 16 2 C -0.09 -2.22 11.53 -37.12 -0.43 -2.65 16 3 C 0.23 5.55 5.28 -6.83 -0.04 5.52 16 4 N -0.43 -10.26 2.59 -117.94 -0.31 -10.56 16 5 C -0.34 -8.00 8.76 -14.93 -0.13 -8.13 16 6 H 0.11 2.30 5.90 -52.49 -0.31 1.99 16 7 C 0.04 0.93 5.02 -17.46 -0.09 0.84 16 8 N -0.85 -20.80 8.87 55.50 0.49 -20.31 16 9 Si 0.91 18.30 29.61 -169.99 -5.03 13.27 16 10 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.46 10.36 6.75 -10.99 -0.07 10.29 16 14 O -0.60 -14.72 14.09 5.55 0.08 -14.64 16 15 C -0.06 -1.01 1.58 -92.92 -0.15 -1.15 16 16 H 0.10 1.73 6.13 -51.93 -0.32 1.41 16 17 C -0.10 -1.66 4.51 -26.73 -0.12 -1.79 16 18 C -0.12 -1.65 5.72 -26.74 -0.15 -1.80 16 19 C -0.15 -1.83 9.91 37.16 0.37 -1.47 16 20 C -0.04 -0.73 3.49 -104.62 -0.37 -1.10 16 21 C -0.11 -1.55 9.67 -39.59 -0.38 -1.93 16 22 C -0.12 -1.61 9.83 -39.55 -0.39 -2.00 16 23 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 24 Cl -0.09 -1.12 28.96 -51.86 -1.50 -2.62 16 25 C -0.12 -1.74 9.83 -39.55 -0.39 -2.13 16 26 C -0.06 -1.05 7.83 -39.59 -0.31 -1.36 16 27 H 0.20 3.53 7.80 -54.08 -0.42 3.11 16 28 H 0.11 2.72 6.13 -51.93 -0.32 2.40 16 29 H 0.07 1.60 7.27 -51.93 -0.38 1.23 16 30 H 0.27 6.35 8.31 -40.82 -0.34 6.02 16 31 H 0.08 1.52 7.68 -51.93 -0.40 1.12 16 32 H 0.06 1.03 7.29 -51.93 -0.38 0.65 16 33 H 0.06 0.80 7.31 -51.93 -0.38 0.42 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 1.64 7.95 -52.48 -0.42 1.23 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.35 6.95 -52.49 -0.36 1.99 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -26.87 358.12 -8.55 -35.42 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.36 Total: 9.35 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.33 Total: -15.30 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.19 Total: -30.87 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.08 Total: -14.64 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.87 -8.55 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.328 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds