Wall clock time and date at job start Tue Mar 31 2020 12:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46704 * 213.91777 * 3 2 1 5 5 C 1.37100 * 120.00211 * 273.30070 * 4 3 2 6 6 H 1.07999 * 120.00632 * 183.45264 * 5 4 3 7 7 C 1.38954 * 119.99912 * 3.45736 * 5 4 3 8 8 N 1.31414 * 120.00059 * 23.76857 * 7 5 4 9 9 Si 1.86798 * 120.00155 * 203.77595 * 7 5 4 10 10 H 1.48501 * 109.46826 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47223 * 119.99596 * 9 7 5 12 12 H 1.48494 * 109.47098 * 239.99666 * 9 7 5 13 13 C 1.34779 * 120.00135 * 93.30427 * 4 3 2 14 14 O 1.21285 * 119.99716 * 5.04092 * 13 4 3 15 15 C 1.50696 * 120.00129 * 185.04509 * 13 4 3 16 16 H 1.09003 * 109.47252 * 321.63569 * 15 13 4 17 17 C 1.53009 * 109.47195 * 81.63146 * 15 13 4 18 18 C 1.52993 * 109.47067 * 182.85719 * 17 15 13 19 19 C 1.53000 * 109.47199 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.47411 * 201.63338 * 15 13 4 21 21 C 1.38234 * 119.99011 * 119.99751 * 20 15 13 22 22 C 1.38209 * 120.01532 * 179.97438 * 21 20 15 23 23 C 1.38356 * 119.98756 * 0.02562 * 22 21 20 24 24 Cl 1.73594 * 120.01510 * 179.97438 * 23 22 21 25 25 C 1.38351 * 119.97078 * 0.27881 * 23 22 21 26 26 C 1.38222 * 119.98646 * 359.39893 * 25 23 22 27 27 H 4.40642 * 5.51485 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46563 * 93.92187 * 3 2 1 29 29 H 1.08990 * 109.47427 * 333.91706 * 3 2 1 30 30 H 0.97000 * 119.99957 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47063 * 302.85895 * 17 15 13 32 32 H 1.08999 * 109.46846 * 62.85904 * 17 15 13 33 33 H 1.08996 * 109.47322 * 300.00017 * 18 17 15 34 34 H 1.09004 * 109.47592 * 60.00462 * 18 17 15 35 35 H 1.09003 * 109.47351 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47070 * 300.00260 * 19 18 17 37 37 H 1.09006 * 109.47093 * 60.00081 * 19 18 17 38 38 H 1.08003 * 119.99033 * 0.02562 * 21 20 15 39 39 H 1.07998 * 120.00819 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00610 * 179.72282 * 25 23 22 41 41 H 1.07996 * 119.99382 * 180.32096 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1471 0.7707 5 6 3.2972 2.3638 0.1605 6 1 3.7092 3.1947 0.7140 7 6 2.9326 2.5282 -1.1703 8 7 2.0368 1.7321 -1.7093 9 14 3.7161 3.8808 -2.1931 10 1 4.6864 4.6336 -1.3583 11 1 4.4224 3.2787 -3.3523 12 1 2.6619 4.8055 -2.6816 13 6 3.4218 1.0057 2.0798 14 8 3.3652 -0.0893 2.5983 15 6 3.8141 2.2080 2.8991 16 1 4.4437 2.8661 2.3003 17 6 2.5556 2.9623 3.3330 18 6 2.9561 4.2215 4.1042 19 6 1.6976 4.9761 4.5374 20 6 4.5756 1.7578 4.1192 21 6 5.8721 2.1915 4.3235 22 6 6.5707 1.7794 5.4425 23 6 5.9724 0.9320 6.3581 24 17 6.8495 0.4134 7.7635 25 6 4.6769 0.4933 6.1498 26 6 3.9769 0.9115 5.0338 27 1 -1.0503 -0.0002 -0.0003 28 1 3.0092 0.0711 -1.0253 29 1 3.0098 -0.9221 0.4518 30 1 1.7821 1.8470 -2.6382 31 1 1.9789 3.2438 2.4520 32 1 1.9504 2.3209 3.9737 33 1 3.5328 3.9400 4.9852 34 1 3.5613 4.8629 3.4635 35 1 1.9830 5.8730 5.0873 36 1 1.1213 5.2576 3.6562 37 1 1.0920 4.3349 5.1780 38 1 6.3390 2.8533 3.6090 39 1 7.5835 2.1186 5.6023 40 1 4.2109 -0.1717 6.8619 41 1 2.9639 0.5731 4.8738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847177312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:53 Heat of formation + Delta-G solvation = 26.738955 kcal Electronic energy + Delta-G solvation = -24612.758935 eV Core-core repulsion = 21098.730200 eV Total energy + Delta-G solvation = -3514.028735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30721 -39.77921 -37.60630 -36.95066 -36.34509 -33.74193 -33.30845 -32.73172 -31.94163 -29.75637 -28.22735 -26.65424 -25.22473 -23.81496 -22.90646 -21.70748 -20.80368 -19.58149 -18.35868 -18.13751 -17.79439 -16.59486 -16.37087 -16.07327 -16.04974 -15.73659 -15.56916 -14.91808 -14.66671 -14.42741 -14.24438 -14.17073 -13.86164 -13.81395 -13.60892 -13.19623 -12.90925 -12.75576 -12.53564 -12.47650 -12.35059 -12.07123 -11.90496 -11.86966 -11.82026 -11.62568 -11.42984 -11.19984 -11.16221 -10.56244 -10.22716 -9.90419 -9.84746 -9.42727 -8.25394 -5.80019 0.23052 0.44142 1.18708 1.41679 1.52058 1.62791 1.88145 2.13918 2.36604 2.42194 2.72142 3.11312 3.22421 3.76841 3.85715 3.96789 4.02659 4.12206 4.18782 4.25637 4.42725 4.44225 4.52977 4.61642 4.75767 4.80995 4.89607 4.93213 5.00762 5.06768 5.08247 5.14418 5.26556 5.30310 5.34287 5.40869 5.43151 5.49142 5.55199 5.74538 5.75958 5.92436 6.41346 7.13249 7.15290 7.58215 7.97979 8.72505 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.003938 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.638775 B = 7107.619244 C = 7432.193207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.139 4.139 3 C 0.237 3.763 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.119 0.881 7 C 0.000 4.000 8 N -0.875 5.875 9 Si 0.979 3.021 10 H -0.253 1.253 11 H -0.283 1.283 12 H -0.286 1.286 13 C 0.452 3.548 14 O -0.628 6.628 15 C -0.045 4.045 16 H 0.103 0.897 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.044 4.044 24 Cl -0.072 7.072 25 C -0.121 4.121 26 C -0.079 4.079 27 H 0.233 0.767 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.268 0.732 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 5.219 10.798 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.140 4.140 3 C 0.115 3.885 4 N -0.162 5.162 5 C -0.481 4.481 6 H 0.136 0.864 7 C -0.204 4.204 8 N -0.513 5.513 9 Si 0.804 3.196 10 H -0.177 1.177 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.242 3.758 14 O -0.516 6.516 15 C -0.066 4.066 16 H 0.121 0.879 17 C -0.130 4.130 18 C -0.149 4.149 19 C -0.206 4.206 20 C -0.062 4.062 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.071 4.071 24 Cl -0.043 7.043 25 C -0.140 4.140 26 C -0.097 4.097 27 H 0.250 0.750 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.287 4.620 10.952 13.010 hybrid contribution -0.343 0.089 -0.981 1.043 sum 4.944 4.710 9.971 12.085 Atomic orbital electron populations 1.25083 0.96306 1.02879 1.03902 1.23493 0.95051 0.97998 0.97464 1.18148 0.84597 0.88381 0.97424 1.43973 1.55236 1.09699 1.07320 1.20053 1.42794 0.89915 0.95362 0.86402 1.25990 0.95168 1.00785 0.98424 1.70288 1.26294 1.40223 1.14459 0.85081 0.78393 0.77872 0.78294 1.17673 1.20845 1.21266 1.20571 0.82656 0.90553 0.81989 1.90510 1.60797 1.28779 1.71542 1.20072 0.98397 0.95014 0.93093 0.87874 1.21387 0.94960 0.96768 0.99862 1.21457 0.98550 0.95143 0.99763 1.21741 0.97396 1.00305 1.01140 1.19673 0.94782 0.97021 0.94682 1.21231 0.92994 1.00330 0.97764 1.21181 1.01140 0.97459 0.93272 1.20969 0.93541 1.01303 0.91269 1.98342 1.75889 1.89934 1.40147 1.21114 0.93372 1.00984 0.98501 1.20908 1.00197 0.95768 0.92865 0.74996 0.88007 0.92153 0.92151 0.92450 0.93207 0.91640 0.91126 0.91161 0.93168 0.93092 0.83313 0.82770 0.84307 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.60 19.25 74.32 1.43 -10.17 16 2 C -0.14 -6.82 11.53 31.13 0.36 -6.46 16 3 C 0.24 11.74 5.28 84.58 0.45 12.19 16 4 N -0.45 -21.66 2.59 -645.42 -1.67 -23.33 16 5 C -0.35 -16.66 8.76 84.04 0.74 -15.93 16 6 H 0.12 5.09 5.90 -2.91 -0.02 5.07 16 7 C 0.00 -0.02 5.02 84.93 0.43 0.41 16 8 N -0.88 -43.61 8.87 21.66 0.19 -43.42 16 9 Si 0.98 37.22 29.61 68.60 2.03 39.25 16 10 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 11 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 13 C 0.45 20.87 6.75 87.66 0.59 21.47 16 14 O -0.63 -32.05 14.09 -3.04 -0.04 -32.09 16 15 C -0.04 -1.63 1.58 -12.28 -0.02 -1.65 16 16 H 0.10 3.58 6.13 -2.39 -0.01 3.56 16 17 C -0.09 -3.07 4.51 30.59 0.14 -2.93 16 18 C -0.11 -2.88 5.72 30.59 0.18 -2.71 16 19 C -0.15 -3.40 9.91 71.98 0.71 -2.68 16 20 C -0.06 -2.00 3.49 -19.86 -0.07 -2.07 16 21 C -0.11 -2.85 9.67 22.26 0.22 -2.63 16 22 C -0.11 -2.73 9.83 22.29 0.22 -2.52 16 23 C -0.04 -1.16 6.32 22.32 0.14 -1.02 16 24 Cl -0.07 -1.63 28.96 -2.72 -0.08 -1.71 16 25 C -0.12 -3.49 9.83 22.29 0.22 -3.27 16 26 C -0.08 -2.64 7.83 22.27 0.17 -2.47 16 27 H 0.23 7.99 7.80 -4.40 -0.03 7.95 16 28 H 0.10 5.17 6.13 -2.39 -0.01 5.16 16 29 H 0.06 2.99 7.27 -2.39 -0.02 2.97 16 30 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 31 H 0.06 2.18 7.68 -2.39 -0.02 2.16 16 32 H 0.05 1.74 7.29 -2.39 -0.02 1.73 16 33 H 0.06 1.64 7.31 -2.39 -0.02 1.62 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.15 3.36 7.95 -2.91 -0.02 3.34 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.11 4.16 6.95 -2.91 -0.02 4.14 16 Total: -1.00 -58.38 358.12 7.36 -51.03 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 1.03 Total: 32.71 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.90 Total: -22.43 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -1.48 Total: -66.75 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -58.38 7.36 -51.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.765 kcal (2) G-P(sol) polarization free energy of solvation -58.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds