Wall clock time and date at job start Tue Mar 31 2020 12:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47212 * 188.11957 * 3 2 1 5 5 C 1.37101 * 119.99685 * 263.40608 * 4 3 2 6 6 H 1.08001 * 119.99399 * 198.76157 * 5 4 3 7 7 C 1.38948 * 120.00070 * 18.75768 * 5 4 3 8 8 N 1.31404 * 120.00104 * 17.75635 * 7 5 4 9 9 Si 1.86798 * 119.99862 * 197.75614 * 7 5 4 10 10 H 1.48507 * 109.46961 * 60.00167 * 9 7 5 11 11 H 1.48501 * 109.47308 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47299 * 300.00358 * 9 7 5 13 13 C 1.34773 * 120.00074 * 83.39752 * 4 3 2 14 14 O 1.21296 * 120.00205 * 184.97510 * 13 4 3 15 15 C 1.50703 * 120.00233 * 4.97271 * 13 4 3 16 16 H 1.08998 * 109.47163 * 328.70819 * 15 13 4 17 17 C 1.53001 * 109.47292 * 208.70570 * 15 13 4 18 18 C 1.53000 * 109.46739 * 64.24813 * 17 15 13 19 19 C 1.53005 * 109.46828 * 184.38156 * 18 17 15 20 20 C 1.50701 * 109.46900 * 88.70742 * 15 13 4 21 21 C 1.38243 * 119.98680 * 59.72566 * 20 15 13 22 22 C 1.38213 * 120.01387 * 179.72306 * 21 20 15 23 23 C 1.38360 * 119.98321 * 0.55370 * 22 21 20 24 24 Cl 1.73605 * 120.01179 * 179.74647 * 23 22 21 25 25 C 1.38347 * 119.97235 * 359.72176 * 23 22 21 26 26 C 1.38215 * 119.99003 * 359.97438 * 25 23 22 27 27 H 4.40647 * 5.51356 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47805 * 68.11572 * 3 2 1 29 29 H 1.09004 * 109.47264 * 308.11559 * 3 2 1 30 30 H 0.97003 * 119.99971 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47064 * 304.24912 * 17 15 13 32 32 H 1.09001 * 109.47100 * 184.24349 * 17 15 13 33 33 H 1.08995 * 109.47392 * 64.38082 * 18 17 15 34 34 H 1.09004 * 109.47382 * 304.37898 * 18 17 15 35 35 H 1.09001 * 109.47048 * 175.12259 * 19 18 17 36 36 H 1.08991 * 109.47031 * 295.12053 * 19 18 17 37 37 H 1.08999 * 109.47235 * 55.12316 * 19 18 17 38 38 H 1.08005 * 119.99292 * 0.02562 * 21 20 15 39 39 H 1.07998 * 120.01261 * 180.27722 * 22 21 20 40 40 H 1.08005 * 120.00652 * 179.97438 * 25 23 22 41 41 H 1.08000 * 119.99049 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3683 0.1951 5 6 3.4905 2.1298 -0.8877 6 1 4.1202 2.9969 -0.7541 7 6 3.0419 1.7858 -2.1570 8 7 2.0204 0.9706 -2.2944 9 14 3.8908 2.4823 -3.6682 10 1 5.3177 2.0707 -3.6682 11 1 3.2269 1.9649 -4.8916 12 1 3.8033 3.9646 -3.6461 13 6 3.2316 1.8778 1.4389 14 8 3.5488 3.0380 1.5959 15 6 2.9470 1.0061 2.6349 16 1 2.1951 0.2623 2.3717 17 6 2.4277 1.8716 3.7848 18 6 1.0872 2.4942 3.3892 19 6 0.6209 3.4450 4.4935 20 6 4.2137 0.3105 3.0623 21 6 5.3166 1.0537 3.4394 22 6 6.4768 0.4163 3.8370 23 6 6.5378 -0.9660 3.8464 24 17 7.9969 -1.7673 4.3393 25 6 5.4356 -1.7091 3.4633 26 6 4.2739 -1.0705 3.0720 27 1 -1.0502 -0.0004 -0.0003 28 1 3.0096 -0.3822 -0.9535 29 1 3.0097 -0.6335 0.8086 30 1 1.7071 0.7308 -3.1806 31 1 3.1469 2.6624 3.9978 32 1 2.2933 1.2537 4.6726 33 1 0.3470 1.7061 3.2517 34 1 1.2048 3.0487 2.4581 35 1 -0.2889 3.9537 4.1748 36 1 0.4201 2.8765 5.4015 37 1 1.3992 4.1821 4.6910 38 1 5.2702 2.1327 3.4282 39 1 7.3369 0.9969 4.1359 40 1 5.4828 -2.7881 3.4701 41 1 3.4133 -1.6507 2.7734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847177319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:55 Heat of formation + Delta-G solvation = 33.645042 kcal Electronic energy + Delta-G solvation = -24795.759746 eV Core-core repulsion = 21282.030481 eV Total energy + Delta-G solvation = -3513.729264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94502 -38.34883 -36.45977 -35.58182 -34.54068 -32.35623 -31.78492 -31.16334 -30.93480 -28.28623 -26.53662 -25.21647 -23.77411 -22.75832 -21.45709 -20.97311 -18.62247 -17.86631 -17.02858 -16.80998 -16.33996 -15.39726 -14.99967 -14.79448 -14.36238 -14.22623 -14.08041 -13.53566 -13.39842 -13.34334 -13.18440 -12.61297 -12.31255 -12.24056 -12.08405 -11.78512 -11.57226 -11.47882 -11.29668 -11.08198 -10.99472 -10.80129 -10.56855 -10.53517 -10.39237 -10.30391 -10.18877 -9.39036 -9.32029 -8.93756 -8.87567 -8.72206 -8.13796 -7.87514 -6.34278 -3.89563 1.25248 1.42785 2.18038 3.15545 3.23153 3.26188 3.61826 3.72495 3.89300 4.03135 4.15768 4.75112 4.92844 4.96155 5.00345 5.10082 5.30673 5.39875 5.44447 5.49410 5.50567 5.52709 5.72229 5.79278 5.85372 6.00833 6.03676 6.12117 6.18036 6.26485 6.30601 6.35004 6.39212 6.44359 6.64105 6.75517 6.80018 6.81922 6.93457 7.01259 7.52864 8.02432 8.40046 8.77307 9.11013 9.33178 9.88184 10.65991 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010214 B = 0.004930 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.694846 B = 5678.475503 C = 7033.786750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.113 4.113 3 C 0.230 3.770 4 N -0.436 5.436 5 C -0.311 4.311 6 H 0.102 0.898 7 C 0.031 3.969 8 N -0.866 5.866 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.463 3.537 14 O -0.577 6.577 15 C -0.070 4.070 16 H 0.090 0.910 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.145 4.145 20 C -0.054 4.054 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.041 4.041 24 Cl -0.084 7.084 25 C -0.111 4.111 26 C -0.105 4.105 27 H 0.199 0.801 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.269 0.731 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -6.195 11.128 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.114 4.114 3 C 0.107 3.893 4 N -0.153 5.153 5 C -0.438 4.438 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.504 5.504 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.251 3.749 14 O -0.461 6.461 15 C -0.092 4.092 16 H 0.108 0.892 17 C -0.128 4.128 18 C -0.163 4.163 19 C -0.203 4.203 20 C -0.055 4.055 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.068 4.068 24 Cl -0.055 7.055 25 C -0.129 4.129 26 C -0.124 4.124 27 H 0.216 0.784 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.692 -5.765 11.042 12.744 hybrid contribution 0.088 0.080 -1.061 1.067 sum 2.781 -5.685 9.982 11.819 Atomic orbital electron populations 1.24276 0.95361 1.02257 1.06077 1.23186 0.94331 0.98207 0.95698 1.18305 0.84186 0.84848 1.01999 1.43655 1.55550 1.11109 1.05007 1.19620 1.28790 1.11433 0.83976 0.88014 1.25293 0.95206 0.97509 0.99274 1.70027 1.21285 1.35083 1.24002 0.86058 0.79418 0.79391 0.80239 1.19896 1.20990 1.19858 1.19703 0.84028 0.87590 0.83541 1.90512 1.52953 1.17460 1.85169 1.20418 0.94531 0.98257 0.95961 0.89203 1.21396 0.97454 0.98496 0.95471 1.21518 0.96157 0.98881 0.99718 1.21714 1.00814 0.99402 0.98356 1.19807 0.95379 0.93263 0.97007 1.21147 0.91562 1.01083 0.96979 1.21019 0.98898 0.92194 1.00711 1.20875 0.88319 0.92883 1.04690 1.98346 1.36735 1.80223 1.90201 1.20943 0.91866 1.00019 1.00101 1.21059 0.97749 0.93823 0.99740 0.78403 0.87015 0.92266 0.92062 0.90772 0.92262 0.92578 0.90810 0.93164 0.93395 0.92774 0.84377 0.85193 0.85155 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.11 -2.44 10.80 -37.12 -0.40 -2.84 16 3 C 0.23 4.96 4.77 -6.83 -0.03 4.93 16 4 N -0.44 -10.58 2.60 -117.93 -0.31 -10.89 16 5 C -0.31 -8.32 9.31 -14.93 -0.14 -8.46 16 6 H 0.10 2.87 7.42 -52.49 -0.39 2.48 16 7 C 0.03 0.80 4.95 -17.47 -0.09 0.71 16 8 N -0.87 -22.26 9.34 55.50 0.52 -21.74 16 9 Si 0.92 20.30 29.59 -169.99 -5.03 15.27 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.46 10.52 5.31 -10.99 -0.06 10.47 16 14 O -0.58 -14.81 15.02 5.54 0.08 -14.73 16 15 C -0.07 -1.23 1.60 -92.92 -0.15 -1.38 16 16 H 0.09 1.54 5.73 -51.93 -0.30 1.25 16 17 C -0.09 -1.44 4.14 -26.73 -0.11 -1.55 16 18 C -0.13 -2.05 5.78 -26.73 -0.15 -2.20 16 19 C -0.15 -1.97 9.91 37.16 0.37 -1.61 16 20 C -0.05 -0.85 4.59 -104.62 -0.48 -1.33 16 21 C -0.09 -1.40 8.85 -39.59 -0.35 -1.75 16 22 C -0.11 -1.52 9.83 -39.55 -0.39 -1.91 16 23 C -0.04 -0.55 6.32 -39.50 -0.25 -0.80 16 24 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 16 25 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 26 C -0.11 -1.45 8.79 -39.59 -0.35 -1.79 16 27 H 0.20 3.22 7.80 -54.08 -0.42 2.80 16 28 H 0.11 2.59 6.36 -51.93 -0.33 2.25 16 29 H 0.06 1.08 5.31 -51.93 -0.28 0.81 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.07 1.25 7.12 -51.93 -0.37 0.88 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.49 6.84 -51.93 -0.36 1.13 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.14 2.29 7.43 -52.48 -0.39 1.90 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.13 1.56 7.63 -52.49 -0.40 1.16 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -29.03 357.67 -8.57 -37.60 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.33 Total: 7.56 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.40 Total: -15.97 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.21 Total: -32.62 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.08 Total: -14.73 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.03 -8.57 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.248 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds