Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47091 * 125.51240 * 3 2 1 5 5 C 1.37103 * 119.99553 * 263.94473 * 4 3 2 6 6 H 1.08009 * 119.99666 * 197.50741 * 5 4 3 7 7 C 1.38948 * 120.00512 * 17.50876 * 5 4 3 8 8 N 1.31410 * 119.99381 * 15.27410 * 7 5 4 9 9 Si 1.86795 * 120.00180 * 195.27634 * 7 5 4 10 10 H 1.48502 * 109.47219 * 59.99954 * 9 7 5 11 11 H 1.48500 * 109.47195 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47071 * 299.99692 * 9 7 5 13 13 C 1.34774 * 120.00111 * 83.93830 * 4 3 2 14 14 O 1.21298 * 119.99641 * 174.49589 * 13 4 3 15 15 C 1.50697 * 119.99932 * 354.77081 * 13 4 3 16 16 H 1.08992 * 109.47425 * 334.70767 * 15 13 4 17 17 C 1.52999 * 109.47076 * 214.70223 * 15 13 4 18 18 C 1.52991 * 109.47197 * 67.38652 * 17 15 13 19 19 C 1.53003 * 109.47211 * 184.48317 * 18 17 15 20 20 C 1.50703 * 109.46971 * 94.70444 * 15 13 4 21 21 C 1.38261 * 119.99434 * 59.72118 * 20 15 13 22 22 C 1.38222 * 120.02840 * 179.76827 * 21 20 15 23 23 C 1.38240 * 120.01174 * 0.51067 * 22 21 20 24 24 C 1.38333 * 119.98408 * 359.74854 * 23 22 21 25 25 Cl 1.73599 * 120.01198 * 180.02562 * 24 23 22 26 26 C 1.38192 * 119.99292 * 240.00094 * 20 15 13 27 27 H 4.40642 * 5.51303 * 180.02562 * 4 1 2 28 28 H 1.08995 * 109.47326 * 5.51216 * 3 2 1 29 29 H 1.08995 * 109.47352 * 245.50880 * 3 2 1 30 30 H 0.97007 * 119.99245 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46648 * 187.39028 * 17 15 13 32 32 H 1.09007 * 109.47225 * 307.38410 * 17 15 13 33 33 H 1.08993 * 109.47568 * 304.48902 * 18 17 15 34 34 H 1.09001 * 109.46997 * 64.48685 * 18 17 15 35 35 H 1.09004 * 109.46882 * 184.92263 * 19 18 17 36 36 H 1.08992 * 109.47452 * 304.92405 * 19 18 17 37 37 H 1.09001 * 109.46463 * 64.92540 * 19 18 17 38 38 H 1.08000 * 119.99079 * 0.02562 * 21 20 15 39 39 H 1.08001 * 119.99651 * 180.25156 * 22 21 20 40 40 H 1.07997 * 120.00960 * 179.71945 * 23 22 21 41 41 H 1.08005 * 120.00720 * 359.97438 * 26 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8032 -1.1243 5 6 3.4808 0.1933 -2.3022 6 1 4.0941 0.7166 -3.0211 7 6 3.0434 -1.0978 -2.5713 8 7 2.0698 -1.6227 -1.8619 9 14 3.8395 -2.0871 -3.9413 10 1 5.2876 -2.2510 -3.6564 11 1 3.1974 -3.4236 -4.0241 12 1 3.6665 -1.3734 -5.2321 13 6 3.2418 2.1409 -1.0007 14 8 3.7387 2.7943 -1.8938 15 6 2.7508 2.8241 0.2495 16 1 1.9754 2.2160 0.7152 17 6 2.1758 4.1954 -0.1110 18 6 0.9012 4.0128 -0.9372 19 6 0.3879 5.3805 -1.3921 20 6 3.8982 2.9975 1.2109 21 6 5.0083 3.7322 0.8370 22 6 6.0590 3.8957 1.7200 23 6 6.0052 3.3158 2.9738 24 6 4.8972 2.5762 3.3464 25 17 4.8286 1.8483 4.9210 26 6 3.8433 2.4174 2.4640 27 1 -1.0501 0.0000 0.0004 28 1 3.0098 -1.0220 -0.0987 29 1 3.0092 0.4268 0.9351 30 1 1.7647 -2.5243 -2.0496 31 1 1.9417 4.7426 0.8022 32 1 2.9085 4.7553 -0.6922 33 1 1.1191 3.3977 -1.8102 34 1 0.1407 3.5234 -0.3287 35 1 -0.5658 5.2582 -1.9056 36 1 0.2530 6.0252 -0.5237 37 1 1.1110 5.8323 -2.0712 38 1 5.0526 4.1820 -0.1438 39 1 6.9241 4.4730 1.4289 40 1 6.8282 3.4398 3.6620 41 1 2.9779 1.8401 2.7544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861520902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = 21.334598 kcal Electronic energy + Delta-G solvation = -24900.378930 eV Core-core repulsion = 21386.115845 eV Total energy + Delta-G solvation = -3514.263085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39149 -39.77190 -37.57051 -37.18741 -36.15279 -34.08025 -33.26226 -32.94686 -31.70846 -29.68830 -28.32456 -26.89171 -25.28675 -23.71341 -22.90047 -22.28188 -20.22656 -19.66466 -18.54491 -18.23546 -17.78549 -16.72320 -16.57657 -16.07784 -15.96415 -15.92548 -15.54333 -14.95539 -14.87230 -14.48607 -14.31262 -14.16729 -13.97592 -13.74795 -13.48582 -13.21348 -12.83062 -12.74562 -12.62635 -12.48800 -12.44125 -12.35897 -12.17835 -11.95037 -11.90097 -11.56033 -11.53220 -11.21781 -11.03795 -10.62085 -10.41992 -9.81891 -9.79206 -9.57993 -8.28400 -5.92440 0.18004 0.27431 1.13644 1.37563 1.41112 1.50232 1.92568 2.12780 2.32093 2.38238 2.63769 3.06883 3.18944 3.61781 3.83333 3.85469 3.97884 4.03344 4.13978 4.23496 4.25277 4.30330 4.47085 4.51975 4.63064 4.71605 4.74771 4.84499 4.91257 4.96267 5.02654 5.06009 5.21659 5.24123 5.34649 5.41943 5.43631 5.44236 5.47121 5.58955 5.82739 6.07643 6.46347 7.13534 7.16282 7.44657 8.00922 8.68554 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010371 B = 0.005090 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.217037 B = 5499.816023 C = 6427.273602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.151 4.151 3 C 0.236 3.764 4 N -0.452 5.452 5 C -0.345 4.345 6 H 0.076 0.924 7 C 0.000 4.000 8 N -0.877 5.877 9 Si 0.983 3.017 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.279 1.279 13 C 0.464 3.536 14 O -0.616 6.616 15 C -0.057 4.057 16 H 0.092 0.908 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.140 4.140 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.110 4.110 24 C -0.038 4.038 25 Cl -0.067 7.067 26 C -0.113 4.113 27 H 0.234 0.766 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.271 0.729 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 8.053 12.130 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.153 4.153 3 C 0.114 3.886 4 N -0.170 5.170 5 C -0.473 4.473 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.515 5.515 9 Si 0.807 3.193 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.205 1.205 13 C 0.253 3.747 14 O -0.503 6.503 15 C -0.078 4.078 16 H 0.110 0.890 17 C -0.125 4.125 18 C -0.160 4.160 19 C -0.197 4.197 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.065 4.065 25 Cl -0.038 7.038 26 C -0.132 4.132 27 H 0.250 0.750 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.136 0.864 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.532 8.077 11.831 14.407 hybrid contribution -0.050 -1.055 -1.030 1.475 sum 1.482 7.022 10.801 12.967 Atomic orbital electron populations 1.25125 0.96255 1.02676 1.02159 1.23369 0.94808 0.98531 0.98586 1.18307 0.84834 0.97742 0.87765 1.43846 1.56146 1.04850 1.12159 1.19554 1.31502 0.98701 0.97527 0.90639 1.25935 0.95511 0.98052 1.00714 1.70119 1.23756 1.16491 1.41157 0.85155 0.78659 0.77356 0.78120 1.19481 1.19706 1.20469 1.20507 0.83114 0.81778 0.89252 1.90458 1.50205 1.64704 1.44909 1.20289 0.96100 0.98898 0.92534 0.89004 1.21428 0.96906 0.93655 1.00483 1.21464 0.97085 0.98536 0.98872 1.21678 1.00658 0.95739 1.01671 1.19513 0.95634 0.97974 0.93597 1.21309 0.93567 0.98215 1.00013 1.21374 0.98720 0.99275 0.92566 1.21330 0.97352 0.96791 0.97412 1.20936 0.97091 1.00606 0.87832 1.98358 1.98473 1.82040 1.24911 1.21019 0.99046 1.00514 0.92577 0.74952 0.88576 0.90244 0.91888 0.89103 0.91997 0.95784 0.91651 0.92232 0.90728 0.93445 0.86398 0.82425 0.82420 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.47 19.25 74.32 1.43 -8.04 16 2 C -0.15 -6.62 10.37 31.13 0.32 -6.30 16 3 C 0.24 10.68 4.78 84.57 0.40 11.08 16 4 N -0.45 -23.17 2.60 -645.41 -1.68 -24.85 16 5 C -0.35 -19.44 9.39 84.04 0.79 -18.65 16 6 H 0.08 4.56 7.32 -2.91 -0.02 4.53 16 7 C 0.00 0.02 5.03 84.93 0.43 0.45 16 8 N -0.88 -45.62 9.14 21.66 0.20 -45.42 16 9 Si 0.98 42.51 29.58 68.60 2.03 44.54 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.46 22.25 5.24 87.66 0.46 22.71 16 14 O -0.62 -33.59 15.19 -3.08 -0.05 -33.64 16 15 C -0.06 -2.09 1.55 -12.29 -0.02 -2.10 16 16 H 0.09 3.33 5.46 -2.39 -0.01 3.31 16 17 C -0.09 -2.84 4.18 30.59 0.13 -2.71 16 18 C -0.12 -4.05 5.83 30.59 0.18 -3.88 16 19 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 20 C -0.07 -2.15 4.54 -19.87 -0.09 -2.24 16 21 C -0.11 -3.50 8.87 22.27 0.20 -3.30 16 22 C -0.10 -2.43 10.05 22.27 0.22 -2.21 16 23 C -0.11 -2.46 9.83 22.29 0.22 -2.24 16 24 C -0.04 -0.96 6.32 22.33 0.14 -0.82 16 25 Cl -0.07 -1.49 28.96 -2.72 -0.08 -1.57 16 26 C -0.11 -3.21 8.56 22.29 0.19 -3.02 16 27 H 0.23 6.95 7.80 -4.41 -0.03 6.91 16 28 H 0.10 4.71 6.22 -2.39 -0.01 4.69 16 29 H 0.08 3.12 5.75 -2.39 -0.01 3.10 16 30 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 31 H 0.09 2.40 8.13 -2.38 -0.02 2.38 16 32 H 0.06 2.19 7.13 -2.38 -0.02 2.17 16 33 H 0.02 1.00 7.31 -2.39 -0.02 0.98 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 4.07 7.19 -2.91 -0.02 4.05 16 39 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.14 3.67 7.77 -2.91 -0.02 3.65 16 Total: -1.00 -64.99 357.57 7.17 -57.82 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 1.03 Total: 27.35 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 5.72 Total: -24.23 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.48 Total: -70.27 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.05 Total: -33.64 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -64.99 7.17 -57.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.156 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds