Wall clock time and date at job start Tue Mar 31 2020 12:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47064 * 299.99826 * 3 2 1 6 6 H 1.48500 * 109.47492 * 59.99649 * 3 2 1 7 7 C 1.37881 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00147 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47122 * 185.00745 * 9 7 2 11 11 C 1.46952 * 111.00067 * 295.17820 * 10 9 7 12 12 C 1.53058 * 109.36091 * 183.18535 * 11 10 9 13 13 N 1.46948 * 109.36678 * 301.59964 * 12 11 10 14 14 C 1.39517 * 111.00261 * 183.19096 * 13 12 11 15 15 C 1.39487 * 120.84842 * 120.00131 * 14 13 12 16 16 F 1.35095 * 120.44698 * 359.97438 * 15 14 13 17 17 C 1.38324 * 119.10162 * 179.97438 * 15 14 13 18 18 F 1.35095 * 119.59149 * 179.72694 * 17 15 14 19 19 N 1.32212 * 120.81974 * 359.97438 * 17 15 14 20 20 C 1.32208 * 121.84990 * 0.02562 * 19 17 15 21 21 F 1.35094 * 119.59118 * 180.02562 * 20 19 17 22 22 C 1.38336 * 120.81660 * 359.97438 * 20 19 17 23 23 F 1.35099 * 120.44665 * 180.02562 * 22 20 19 24 24 C 1.46952 * 110.88175 * 59.32265 * 13 12 11 25 25 C 1.46953 * 110.99661 * 58.98354 * 10 9 7 26 26 H 0.96996 * 120.00298 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47150 * 65.01280 * 9 7 2 28 28 H 1.09001 * 109.47546 * 305.00571 * 9 7 2 29 29 H 1.09003 * 109.48781 * 63.22302 * 11 10 9 30 30 H 1.08996 * 109.49268 * 303.15240 * 11 10 9 31 31 H 1.09010 * 109.48163 * 181.63522 * 12 11 10 32 32 H 1.09000 * 109.50612 * 61.58480 * 12 11 10 33 33 H 1.09003 * 109.48781 * 60.64315 * 24 13 12 34 34 H 1.09005 * 109.49655 * 180.70648 * 24 13 12 35 35 H 1.09003 * 109.49072 * 296.77181 * 25 10 9 36 36 H 1.08997 * 109.49320 * 56.84436 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2010 -3.6131 0.1220 11 6 3.0789 -3.6872 -1.0541 12 6 3.9975 -4.9047 -0.9256 13 7 4.7853 -4.7925 0.3097 14 6 5.6876 -5.8504 0.4252 15 6 7.0605 -5.6147 0.4982 16 9 7.5417 -4.3530 0.4576 17 6 7.9225 -6.6904 0.6127 18 9 9.2544 -6.4739 0.6786 19 7 7.4595 -7.9282 0.6537 20 6 6.1657 -8.1916 0.5872 21 9 5.7427 -9.4738 0.6337 22 6 5.2396 -7.1705 0.4718 23 9 3.9191 -7.4481 0.4050 24 6 3.9074 -4.7183 1.4859 25 6 2.9887 -3.5009 1.3575 26 1 -0.4850 0.8400 -0.0004 27 1 0.6937 -2.5970 -0.9311 28 1 0.5584 -2.5189 0.8420 29 1 3.6821 -2.7814 -1.1153 30 1 2.4727 -3.7825 -1.9549 31 1 4.6695 -4.9452 -1.7831 32 1 3.3957 -5.8129 -0.8920 33 1 3.3043 -5.6242 1.5471 34 1 4.5136 -4.6232 2.3869 35 1 3.5909 -2.5930 1.3237 36 1 2.3168 -3.4604 2.2148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866214883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:50 Heat of formation + Delta-G solvation = -101.229485 kcal Electronic energy + Delta-G solvation = -27370.839144 eV Core-core repulsion = 22777.527822 eV Total energy + Delta-G solvation = -4593.311322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.16147 -50.02480 -49.23711 -49.05884 -40.74428 -38.90735 -35.81062 -32.78758 -31.53754 -30.69453 -30.67630 -27.90883 -25.45090 -24.33566 -23.59980 -23.31419 -21.84251 -20.09670 -19.27188 -18.88127 -18.73310 -17.71289 -17.25327 -16.77024 -16.50641 -16.38818 -16.18208 -15.78480 -15.47814 -15.04842 -14.90787 -14.85797 -14.44739 -14.34516 -14.25567 -14.17293 -13.37178 -13.22651 -12.84698 -12.83422 -12.21305 -12.02295 -11.31805 -11.10545 -11.03277 -10.94429 -10.81245 -10.58136 -10.30552 -10.04760 -9.94459 -9.66740 -9.31615 -8.88277 -8.49970 -7.33153 -6.09615 -4.18890 -0.22315 -0.08286 2.06210 2.34151 2.74870 2.98714 3.23029 3.26522 3.31902 3.35695 3.70233 3.96801 4.35727 4.36110 4.60320 4.83315 5.05297 5.06838 5.19885 5.23844 5.41902 5.61244 5.65203 5.70334 5.84279 5.97148 6.33978 6.38144 6.55216 6.59842 6.69116 6.79502 7.14509 7.44361 7.81559 7.89910 8.11342 8.19862 8.91195 9.48830 10.95790 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003657 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.875768 B = 7655.151335 C = 8654.458871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.187 3.813 10 N -0.543 5.543 11 C 0.065 3.935 12 C 0.052 3.948 13 N -0.493 5.493 14 C 0.134 3.866 15 C 0.075 3.925 16 F -0.088 7.088 17 C 0.317 3.683 18 F -0.083 7.083 19 N -0.499 5.499 20 C 0.319 3.681 21 F -0.085 7.085 22 C 0.021 3.979 23 F -0.095 7.095 24 C 0.054 3.946 25 C 0.067 3.933 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.726 -14.798 1.149 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.591 4.591 8 H 0.078 0.922 9 C 0.062 3.938 10 N -0.267 5.267 11 C -0.064 4.064 12 C -0.073 4.073 13 N -0.215 5.215 14 C 0.029 3.971 15 C 0.050 3.950 16 F -0.066 7.066 17 C 0.161 3.839 18 F -0.062 7.062 19 N -0.218 5.218 20 C 0.163 3.837 21 F -0.064 7.064 22 C -0.006 4.006 23 F -0.073 7.073 24 C -0.071 4.071 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.086 -15.318 1.220 20.183 hybrid contribution 0.067 1.559 -0.070 1.562 sum 13.153 -13.759 1.149 19.069 Atomic orbital electron populations 1.69946 1.06048 1.26839 1.50016 1.24954 0.94740 0.99207 0.94779 0.86593 0.80220 0.83870 0.77687 1.19735 1.20943 1.20942 1.21775 0.93451 0.91955 1.51877 0.92207 1.19753 0.90698 0.85315 0.98031 1.62734 1.16757 1.46711 1.00519 1.21933 0.94101 0.95214 0.95124 1.22579 0.95113 1.00806 0.88822 1.59844 1.19569 1.36101 1.05938 1.19161 0.92820 0.88814 0.96348 1.17923 0.89830 0.80759 1.06498 1.91655 1.87263 1.34618 1.93051 1.17205 0.79686 0.86675 1.00288 1.91743 1.27615 1.94006 1.92837 1.66326 1.15223 1.22237 1.18021 1.17302 0.86334 0.80091 0.99970 1.91737 1.88272 1.33513 1.92903 1.19122 0.79967 0.92868 1.08603 1.91622 1.28705 1.93705 1.93302 1.22567 0.93701 1.00890 0.89935 1.21921 0.94813 0.94891 0.94583 0.92802 0.95259 0.94532 0.92861 0.90375 0.90477 0.92384 0.92618 0.90434 0.92589 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.55 -14.42 7.66 -34.44 -0.26 -14.68 16 8 H 0.06 1.57 5.82 -52.48 -0.31 1.26 16 9 C 0.19 4.54 5.14 -4.98 -0.03 4.52 16 10 N -0.54 -10.73 4.92 -235.91 -1.16 -11.89 16 11 C 0.07 1.15 5.32 -3.77 -0.02 1.13 16 12 C 0.05 0.74 5.26 -3.77 -0.02 0.72 16 13 N -0.49 -6.91 4.56 -170.64 -0.78 -7.69 16 14 C 0.13 1.60 4.75 -83.43 -0.40 1.20 16 15 C 0.07 0.85 7.36 -39.08 -0.29 0.56 16 16 F -0.09 -1.10 17.05 2.25 0.04 -1.07 16 17 C 0.32 3.40 8.41 -17.36 -0.15 3.25 16 18 F -0.08 -0.88 17.20 2.25 0.04 -0.84 16 19 N -0.50 -5.61 10.38 -13.95 -0.14 -5.75 16 20 C 0.32 3.44 8.41 -17.35 -0.15 3.29 16 21 F -0.09 -0.92 17.20 2.25 0.04 -0.88 16 22 C 0.02 0.23 6.76 -39.08 -0.26 -0.03 16 23 F -0.10 -1.15 13.60 2.25 0.03 -1.12 16 24 C 0.05 0.78 5.30 -3.77 -0.02 0.76 16 25 C 0.07 1.19 5.24 -3.77 -0.02 1.18 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 30 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 31 H 0.08 0.96 8.13 -51.92 -0.42 0.54 16 32 H 0.06 0.81 6.25 -51.93 -0.32 0.49 16 33 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 34 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.06 1.12 6.62 -51.93 -0.34 0.78 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -27.29 313.20 -6.54 -33.83 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.33 Total: -4.11 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.71 Total: 3.58 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -1.35 Total: -49.96 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.15 Total: -3.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.29 -6.54 -33.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866214883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.399 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds