Wall clock time and date at job start Tue Mar 31 2020 12:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47064 * 299.99826 * 3 2 1 6 6 H 1.48500 * 109.47492 * 59.99649 * 3 2 1 7 7 C 1.37881 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00147 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47122 * 185.00745 * 9 7 2 11 11 C 1.46952 * 111.00067 * 295.17820 * 10 9 7 12 12 C 1.53058 * 109.36091 * 183.18535 * 11 10 9 13 13 N 1.46948 * 109.36678 * 301.59964 * 12 11 10 14 14 C 1.39517 * 111.00261 * 183.19096 * 13 12 11 15 15 C 1.39487 * 120.84842 * 120.00131 * 14 13 12 16 16 F 1.35095 * 120.44698 * 359.97438 * 15 14 13 17 17 C 1.38324 * 119.10162 * 179.97438 * 15 14 13 18 18 F 1.35095 * 119.59149 * 179.72694 * 17 15 14 19 19 N 1.32212 * 120.81974 * 359.97438 * 17 15 14 20 20 C 1.32208 * 121.84990 * 0.02562 * 19 17 15 21 21 F 1.35094 * 119.59118 * 180.02562 * 20 19 17 22 22 C 1.38336 * 120.81660 * 359.97438 * 20 19 17 23 23 F 1.35099 * 120.44665 * 180.02562 * 22 20 19 24 24 C 1.46952 * 110.88175 * 59.32265 * 13 12 11 25 25 C 1.46953 * 110.99661 * 58.98354 * 10 9 7 26 26 H 0.96996 * 120.00298 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47150 * 65.01280 * 9 7 2 28 28 H 1.09001 * 109.47546 * 305.00571 * 9 7 2 29 29 H 1.09003 * 109.48781 * 63.22302 * 11 10 9 30 30 H 1.08996 * 109.49268 * 303.15240 * 11 10 9 31 31 H 1.09010 * 109.48163 * 181.63522 * 12 11 10 32 32 H 1.09000 * 109.50612 * 61.58480 * 12 11 10 33 33 H 1.09003 * 109.48781 * 60.64315 * 24 13 12 34 34 H 1.09005 * 109.49655 * 180.70648 * 24 13 12 35 35 H 1.09003 * 109.49072 * 296.77181 * 25 10 9 36 36 H 1.08997 * 109.49320 * 56.84436 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2010 -3.6131 0.1220 11 6 3.0789 -3.6872 -1.0541 12 6 3.9975 -4.9047 -0.9256 13 7 4.7853 -4.7925 0.3097 14 6 5.6876 -5.8504 0.4252 15 6 7.0605 -5.6147 0.4982 16 9 7.5417 -4.3530 0.4576 17 6 7.9225 -6.6904 0.6127 18 9 9.2544 -6.4739 0.6786 19 7 7.4595 -7.9282 0.6537 20 6 6.1657 -8.1916 0.5872 21 9 5.7427 -9.4738 0.6337 22 6 5.2396 -7.1705 0.4718 23 9 3.9191 -7.4481 0.4050 24 6 3.9074 -4.7183 1.4859 25 6 2.9887 -3.5009 1.3575 26 1 -0.4850 0.8400 -0.0004 27 1 0.6937 -2.5970 -0.9311 28 1 0.5584 -2.5189 0.8420 29 1 3.6821 -2.7814 -1.1153 30 1 2.4727 -3.7825 -1.9549 31 1 4.6695 -4.9452 -1.7831 32 1 3.3957 -5.8129 -0.8920 33 1 3.3043 -5.6242 1.5471 34 1 4.5136 -4.6232 2.3869 35 1 3.5909 -2.5930 1.3237 36 1 2.3168 -3.4604 2.2148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866214883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:50 Heat of formation + Delta-G solvation = -119.428738 kcal Electronic energy + Delta-G solvation = -27371.628323 eV Core-core repulsion = 22777.527822 eV Total energy + Delta-G solvation = -4594.100501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.05260 -50.91095 -50.12767 -49.96915 -41.71889 -40.13811 -37.24935 -34.65222 -32.78499 -31.99941 -31.56888 -29.52665 -27.08873 -25.25794 -24.81219 -24.64113 -23.44271 -21.29777 -20.35185 -19.91672 -19.65870 -18.60392 -18.49254 -18.12714 -17.65341 -17.39253 -17.26429 -16.73411 -16.71341 -16.41938 -16.06829 -15.88517 -15.81846 -15.66784 -15.42747 -15.13580 -14.91954 -14.63529 -13.93741 -13.79882 -13.72140 -13.61290 -13.03442 -12.80430 -12.60989 -12.36534 -12.22683 -11.97537 -11.92322 -11.76843 -11.50158 -11.06133 -10.60280 -10.18820 -9.99823 -9.06484 -8.15397 -6.33865 -1.09442 -0.99721 1.17411 1.36610 1.39465 1.45977 1.50192 1.82862 2.06156 2.27163 2.38202 2.80938 3.05517 3.10651 3.28899 3.42404 3.70130 3.85930 4.03270 4.16760 4.17460 4.36549 4.39802 4.57175 4.67951 4.78426 4.96068 5.04614 5.15632 5.22787 5.35043 5.46815 5.50844 5.63857 5.76655 6.02189 6.22359 6.45761 6.86470 7.37875 8.87551 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003657 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.875768 B = 7655.151335 C = 8654.458871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.200 3.800 10 N -0.541 5.541 11 C 0.066 3.934 12 C 0.063 3.937 13 N -0.504 5.504 14 C 0.132 3.868 15 C 0.081 3.919 16 F -0.095 7.095 17 C 0.330 3.670 18 F -0.080 7.080 19 N -0.504 5.504 20 C 0.330 3.670 21 F -0.083 7.083 22 C 0.030 3.970 23 F -0.099 7.099 24 C 0.065 3.935 25 C 0.068 3.932 26 H 0.265 0.735 27 H 0.007 0.993 28 H 0.010 0.990 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.032 0.968 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.538 -15.692 1.256 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.265 5.265 11 C -0.063 4.063 12 C -0.063 4.063 13 N -0.226 5.226 14 C 0.027 3.973 15 C 0.056 3.944 16 F -0.073 7.073 17 C 0.174 3.826 18 F -0.059 7.059 19 N -0.223 5.223 20 C 0.174 3.826 21 F -0.062 7.062 22 C 0.003 3.997 23 F -0.077 7.077 24 C -0.060 4.060 25 C -0.061 4.061 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.920 -16.233 1.327 22.088 hybrid contribution -0.467 1.764 -0.102 1.827 sum 14.453 -14.469 1.226 20.488 Atomic orbital electron populations 1.70057 1.07501 1.27763 1.51221 1.25749 0.95507 1.02648 0.94598 0.85570 0.79003 0.79752 0.77739 1.19254 1.20523 1.20511 1.21991 0.93392 0.92831 1.50983 0.92441 1.19400 0.91107 0.86476 0.95625 1.62649 1.17349 1.44264 1.02252 1.21935 0.93987 0.96128 0.94207 1.22451 0.95009 0.98840 0.89990 1.59706 1.19686 1.37572 1.05595 1.18955 0.92435 0.88415 0.97448 1.17829 0.89572 0.80512 1.06470 1.91643 1.87345 1.35200 1.93141 1.17053 0.79641 0.86288 0.99598 1.91757 1.27457 1.93973 1.92719 1.66359 1.15409 1.22385 1.18168 1.17169 0.86039 0.80025 0.99368 1.91750 1.88245 1.33396 1.92801 1.18939 0.79728 0.92517 1.08472 1.91618 1.29084 1.93702 1.93341 1.22424 0.93524 0.98995 0.91085 1.21903 0.94785 0.95914 0.93458 0.92647 0.97514 0.97158 0.95168 0.90431 0.88212 0.91715 0.91929 0.88239 0.94976 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.80 5.46 84.66 0.46 1.26 16 3 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -29.48 7.66 25.60 0.20 -29.29 16 8 H 0.06 3.05 5.82 -2.91 -0.02 3.03 16 9 C 0.20 10.06 5.14 85.55 0.44 10.50 16 10 N -0.54 -21.64 4.92 -900.28 -4.43 -26.07 16 11 C 0.07 2.33 5.32 86.31 0.46 2.79 16 12 C 0.06 1.66 5.26 86.31 0.45 2.12 16 13 N -0.50 -13.14 4.56 -693.78 -3.17 -16.31 16 14 C 0.13 2.82 4.75 38.52 0.18 3.00 16 15 C 0.08 1.63 7.36 22.59 0.17 1.80 16 16 F -0.10 -2.20 17.05 44.97 0.77 -1.43 16 17 C 0.33 6.22 8.41 84.66 0.71 6.94 16 18 F -0.08 -1.51 17.20 44.97 0.77 -0.73 16 19 N -0.50 -9.99 10.38 -198.06 -2.06 -12.04 16 20 C 0.33 6.23 8.41 84.66 0.71 6.94 16 21 F -0.08 -1.58 17.20 44.97 0.77 -0.80 16 22 C 0.03 0.58 6.76 22.59 0.15 0.74 16 23 F -0.10 -2.14 13.60 44.97 0.61 -1.53 16 24 C 0.07 1.75 5.30 86.31 0.46 2.21 16 25 C 0.07 2.43 5.24 86.31 0.45 2.89 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.01 0.36 8.12 -2.39 -0.02 0.34 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.03 1.20 6.78 -2.39 -0.02 1.18 16 30 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 31 H 0.10 2.23 8.13 -2.38 -0.02 2.21 16 32 H 0.06 1.67 6.25 -2.39 -0.01 1.65 16 33 H 0.06 1.62 6.53 -2.39 -0.02 1.61 16 34 H 0.10 2.26 8.13 -2.38 -0.02 2.24 16 35 H 0.03 1.30 6.62 -2.39 -0.02 1.28 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -58.29 313.20 1.59 -56.70 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: 1.15 Total: -1.28 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.85 Total: 11.88 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -9.36 Total: -107.91 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 2.93 Total: -4.50 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -58.29 1.59 -56.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866214883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.728 kcal (2) G-P(sol) polarization free energy of solvation -58.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds