Wall clock time and date at job start Tue Mar 31 2020 12:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47267 * 2 1 4 4 C 1.53003 * 109.46482 * 240.00290 * 2 1 3 5 5 C 1.50697 * 109.47340 * 60.00183 * 4 2 1 6 6 H 1.07998 * 120.00459 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99675 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00408 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47062 * 89.99811 * 9 7 5 11 11 H 1.48497 * 109.47113 * 210.00062 * 9 7 5 12 12 H 1.48505 * 109.46905 * 330.00112 * 9 7 5 13 13 C 1.52997 * 109.47072 * 120.00629 * 2 1 3 14 14 N 1.46504 * 109.46847 * 299.99280 * 13 2 1 15 15 C 1.34776 * 120.00034 * 180.02562 * 14 13 2 16 16 O 1.21631 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.47297 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.38368 * 120.57442 * 359.97438 * 17 15 14 19 19 C 1.38871 * 121.15376 * 179.75078 * 18 17 15 20 20 C 1.35569 * 122.43560 * 0.56984 * 19 18 17 21 21 C 1.41636 * 120.90091 * 359.42785 * 20 19 18 22 22 N 1.32400 * 131.03449 * 180.25170 * 21 20 19 23 23 S 1.55553 * 109.37263 * 180.02562 * 22 21 20 24 24 N 1.55550 * 100.17548 * 0.02562 * 23 22 21 25 25 C 1.31851 * 109.44984 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47198 * 300.00014 * 1 2 3 27 27 H 1.09001 * 109.47226 * 59.99551 * 1 2 3 28 28 H 1.08995 * 109.47744 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47369 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47364 * 300.00364 * 3 2 1 31 31 H 1.09001 * 109.47023 * 59.99879 * 3 2 1 32 32 H 1.09005 * 109.46624 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47351 * 299.99769 * 4 2 1 34 34 H 0.96998 * 119.99572 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46703 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47714 * 59.99315 * 13 2 1 37 37 H 0.96995 * 119.99760 * 0.02562 * 14 13 2 38 38 H 1.07996 * 119.42147 * 0.04592 * 18 17 15 39 39 H 1.07998 * 118.78053 * 180.27840 * 19 18 17 40 40 H 1.08002 * 119.55247 * 179.71304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3807 7 6 1.8710 -0.4816 -3.7320 8 7 1.4329 0.1388 -4.8058 9 14 2.9459 -1.9996 -3.9036 10 1 2.0882 -3.2110 -3.9490 11 1 3.7378 -1.9064 -5.1563 12 1 3.8664 -2.0881 -2.7415 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5776 -1.4794 3.7810 17 6 1.3864 0.2031 4.8722 18 6 0.5898 1.3289 4.7591 19 6 0.1158 1.9895 5.8848 20 6 0.4104 1.5834 7.1442 21 6 1.2179 0.4419 7.3702 22 7 1.6220 -0.1281 8.4948 23 16 2.4994 -1.3678 8.1586 24 7 2.4633 -1.3167 6.6044 25 6 1.7350 -0.2886 6.2157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 -1.2491 33 1 1.6765 -1.7489 -1.2494 34 1 1.6672 -0.1926 -5.6868 35 1 3.1300 -0.7217 1.2488 36 1 1.6766 -1.7490 1.2492 37 1 0.9939 0.7577 2.3564 38 1 0.3284 1.6974 3.7782 39 1 -0.5068 2.8619 5.7521 40 1 0.0202 2.1350 7.9868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880006303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:40 Heat of formation + Delta-G solvation = 35.470366 kcal Electronic energy + Delta-G solvation = -23740.324529 eV Core-core repulsion = 20261.010874 eV Total energy + Delta-G solvation = -3479.313655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18293 -39.50528 -37.21307 -36.63608 -34.01291 -33.68373 -32.16554 -30.69716 -27.91356 -27.81422 -26.58412 -26.35545 -23.62345 -22.80362 -22.07842 -20.38901 -19.77181 -18.45584 -17.86723 -17.11025 -16.68192 -16.45239 -16.11462 -15.35351 -15.13135 -15.06700 -14.23424 -13.75132 -13.73615 -13.50685 -13.12926 -12.76000 -12.51213 -12.45834 -12.26518 -12.15880 -12.08356 -11.72933 -11.26278 -11.25571 -11.14225 -11.03524 -11.00726 -10.63221 -10.50761 -9.99016 -9.93762 -9.74990 -9.47315 -9.12086 -9.00926 -8.93533 -8.67739 -8.54238 -6.05256 -4.02524 -0.59691 1.00302 1.12378 1.17737 1.44595 2.69430 3.13303 3.31374 3.39523 3.43734 3.47619 3.85392 4.35213 4.41792 4.45152 4.53262 4.67408 4.86978 5.27425 5.29274 5.40552 5.44715 5.50916 5.61299 5.72173 5.84283 5.87128 6.07782 6.09217 6.17358 6.28904 6.43629 6.46395 6.57310 6.65696 6.87706 6.99844 7.03178 7.18913 7.35358 7.60555 7.78065 8.31362 8.51684 8.98681 9.57617 11.07428 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.002689 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.931886 B =10411.455460 C =11238.029358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.127 3.873 14 N -0.715 5.715 15 C 0.547 3.453 16 O -0.516 6.516 17 C -0.069 4.069 18 C -0.056 4.056 19 C -0.101 4.101 20 C -0.044 4.044 21 C 0.073 3.927 22 N -0.595 5.595 23 S 0.786 5.214 24 N -0.554 5.554 25 C 0.109 3.891 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 3.807 26.194 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.004 3.996 14 N -0.369 5.369 15 C 0.333 3.667 16 O -0.392 6.392 17 C -0.080 4.080 18 C -0.080 4.080 19 C -0.126 4.126 20 C -0.068 4.068 21 C -0.087 4.087 22 N -0.445 5.445 23 S 0.833 5.167 24 N -0.402 5.402 25 C -0.054 4.054 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.059 1.537 27.485 27.548 hybrid contribution -0.516 0.687 -1.409 1.650 sum -1.574 2.224 26.075 26.217 Atomic orbital electron populations 1.21784 0.94745 1.01356 1.00764 1.20701 0.95860 0.95948 0.93863 1.21779 1.00554 0.95530 1.00761 1.19595 0.96330 0.95518 0.92564 1.21071 1.31829 1.13369 0.88591 0.90355 1.24997 0.95690 0.96736 0.95996 1.69903 1.45956 1.40549 0.97888 0.86865 0.81360 0.83920 0.77668 1.20374 1.21518 1.18973 1.21677 0.99048 0.96083 0.82764 1.46065 1.53303 1.32044 1.05444 1.17841 0.81382 0.84619 0.82864 1.90858 1.36662 1.25197 1.86443 1.20403 1.01318 0.97051 0.89220 1.21410 0.93815 0.92656 1.00165 1.20597 1.00153 1.00672 0.91129 1.20321 0.95565 0.92651 0.98296 1.21261 1.02109 0.99638 0.85740 1.72233 1.21987 1.17451 1.32875 1.78753 1.28651 1.15729 0.93576 1.72199 1.24521 1.24946 1.18555 1.21977 0.96707 0.91289 0.95394 0.95045 0.90788 0.93336 0.93330 0.90787 0.95041 0.96330 0.96780 0.92793 0.91611 0.91621 0.76574 0.83768 0.83665 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.43 8.20 -34.44 -0.28 -13.72 16 6 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 9 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.08 16 14 N -0.72 -9.82 4.91 -61.42 -0.30 -10.12 16 15 C 0.55 8.42 7.77 -12.58 -0.10 8.32 16 16 O -0.52 -10.11 16.09 5.25 0.08 -10.02 16 17 C -0.07 -0.86 6.07 -102.50 -0.62 -1.48 16 18 C -0.06 -0.45 9.49 -39.30 -0.37 -0.82 16 19 C -0.10 -0.62 9.82 -40.30 -0.40 -1.02 16 20 C -0.04 -0.34 10.03 -39.24 -0.39 -0.73 16 21 C 0.07 0.80 7.17 -83.18 -0.60 0.21 16 22 N -0.60 -6.46 11.45 25.61 0.29 -6.16 16 23 S 0.79 7.49 23.60 -107.50 -2.54 4.95 16 24 N -0.55 -7.77 10.68 26.55 0.28 -7.48 16 25 C 0.11 1.45 7.05 -81.05 -0.57 0.88 16 26 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 27 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.40 4.32 4.20 -40.82 -0.17 4.15 16 38 H 0.14 0.81 6.37 -52.49 -0.33 0.48 16 39 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -34.76 339.48 -8.66 -43.42 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.69 Total: -0.71 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.02 Total: -9.51 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 1.05 Total: -49.97 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -2.54 Total: 4.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.76 -8.66 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880006303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.889 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds