Wall clock time and date at job start Tue Mar 31 2020 12:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47267 * 2 1 4 4 C 1.53003 * 109.46482 * 240.00290 * 2 1 3 5 5 C 1.50697 * 109.47340 * 60.00183 * 4 2 1 6 6 H 1.07998 * 120.00459 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99675 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00408 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47062 * 89.99811 * 9 7 5 11 11 H 1.48497 * 109.47113 * 210.00062 * 9 7 5 12 12 H 1.48505 * 109.46905 * 330.00112 * 9 7 5 13 13 C 1.52997 * 109.47072 * 120.00629 * 2 1 3 14 14 N 1.46504 * 109.46847 * 299.99280 * 13 2 1 15 15 C 1.34776 * 120.00034 * 180.02562 * 14 13 2 16 16 O 1.21631 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.47297 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.38368 * 120.57442 * 359.97438 * 17 15 14 19 19 C 1.38871 * 121.15376 * 179.75078 * 18 17 15 20 20 C 1.35569 * 122.43560 * 0.56984 * 19 18 17 21 21 C 1.41636 * 120.90091 * 359.42785 * 20 19 18 22 22 N 1.32400 * 131.03449 * 180.25170 * 21 20 19 23 23 S 1.55553 * 109.37263 * 180.02562 * 22 21 20 24 24 N 1.55550 * 100.17548 * 0.02562 * 23 22 21 25 25 C 1.31851 * 109.44984 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47198 * 300.00014 * 1 2 3 27 27 H 1.09001 * 109.47226 * 59.99551 * 1 2 3 28 28 H 1.08995 * 109.47744 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47369 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47364 * 300.00364 * 3 2 1 31 31 H 1.09001 * 109.47023 * 59.99879 * 3 2 1 32 32 H 1.09005 * 109.46624 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47351 * 299.99769 * 4 2 1 34 34 H 0.96998 * 119.99572 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46703 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.47714 * 59.99315 * 13 2 1 37 37 H 0.96995 * 119.99760 * 0.02562 * 14 13 2 38 38 H 1.07996 * 119.42147 * 0.04592 * 18 17 15 39 39 H 1.07998 * 118.78053 * 180.27840 * 19 18 17 40 40 H 1.08002 * 119.55247 * 179.71304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7212 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3807 7 6 1.8710 -0.4816 -3.7320 8 7 1.4329 0.1388 -4.8058 9 14 2.9459 -1.9996 -3.9036 10 1 2.0882 -3.2110 -3.9490 11 1 3.7378 -1.9064 -5.1563 12 1 3.8664 -2.0881 -2.7415 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5776 -1.4794 3.7810 17 6 1.3864 0.2031 4.8722 18 6 0.5898 1.3289 4.7591 19 6 0.1158 1.9895 5.8848 20 6 0.4104 1.5834 7.1442 21 6 1.2179 0.4419 7.3702 22 7 1.6220 -0.1281 8.4948 23 16 2.4994 -1.3678 8.1586 24 7 2.4633 -1.3167 6.6044 25 6 1.7350 -0.2886 6.2157 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 -1.2491 33 1 1.6765 -1.7489 -1.2494 34 1 1.6672 -0.1926 -5.6868 35 1 3.1300 -0.7217 1.2488 36 1 1.6766 -1.7490 1.2492 37 1 0.9939 0.7577 2.3564 38 1 0.3284 1.6974 3.7782 39 1 -0.5068 2.8619 5.7521 40 1 0.0202 2.1350 7.9868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880006303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:40 Heat of formation + Delta-G solvation = 10.898756 kcal Electronic energy + Delta-G solvation = -23741.390034 eV Core-core repulsion = 20261.010874 eV Total energy + Delta-G solvation = -3480.379160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97294 -40.66156 -38.63085 -37.34976 -35.20034 -34.82091 -33.99754 -31.54370 -29.66703 -28.59911 -27.94093 -27.63145 -24.93141 -23.75795 -23.33198 -21.41606 -20.62209 -19.73792 -18.89208 -18.76049 -17.88287 -17.37381 -16.94857 -16.46824 -16.28753 -16.03615 -15.82628 -15.24638 -15.15547 -14.92105 -14.21686 -14.14502 -13.90049 -13.72055 -13.13157 -12.95139 -12.84716 -12.83657 -12.80706 -12.63015 -12.51390 -12.27977 -12.14800 -12.04116 -11.84980 -11.77130 -11.49231 -11.27186 -10.93074 -10.82852 -10.69415 -10.12969 -9.81738 -9.45953 -8.21631 -6.20915 -1.31501 0.27727 0.39047 0.39228 0.71495 1.35339 1.38793 1.48243 1.83806 2.07220 2.39395 2.61908 3.05090 3.14093 3.62889 3.75140 3.92729 3.95236 3.98946 4.07943 4.17770 4.24857 4.63132 4.68059 4.72497 4.79993 4.84075 4.99089 5.04559 5.13625 5.15909 5.23732 5.30869 5.32006 5.37224 5.43762 5.47503 5.58472 5.73574 5.78138 5.79207 6.39364 6.56293 6.86060 7.23448 7.41840 8.93768 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.002689 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.931886 B =10411.455460 C =11238.029358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.255 1.255 13 C 0.140 3.860 14 N -0.701 5.701 15 C 0.549 3.451 16 O -0.571 6.571 17 C -0.120 4.120 18 C -0.017 4.017 19 C -0.092 4.092 20 C -0.037 4.037 21 C 0.058 3.942 22 N -0.606 5.606 23 S 0.833 5.167 24 N -0.614 5.614 25 C 0.087 3.913 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.414 0.586 38 H 0.176 0.824 39 H 0.195 0.805 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 5.580 28.631 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.179 1.179 13 C 0.016 3.984 14 N -0.355 5.355 15 C 0.337 3.663 16 O -0.451 6.451 17 C -0.130 4.130 18 C -0.042 4.042 19 C -0.116 4.116 20 C -0.062 4.062 21 C -0.101 4.101 22 N -0.457 5.457 23 S 0.881 5.119 24 N -0.464 5.464 25 C -0.075 4.075 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.193 0.807 39 H 0.212 0.788 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.361 3.339 29.938 30.216 hybrid contribution -0.191 0.240 -2.046 2.069 sum -2.552 3.579 27.892 28.237 Atomic orbital electron populations 1.21726 0.93527 1.01306 1.01671 1.20557 0.96773 0.96255 0.92187 1.21722 1.00183 0.94636 1.01672 1.19583 0.95862 0.95482 0.93380 1.21365 1.30095 1.12322 0.89874 0.92470 1.25782 0.97411 0.99685 0.96015 1.70031 1.48171 1.42564 0.98395 0.85961 0.79978 0.80701 0.77807 1.19831 1.21498 1.17852 1.21292 0.98205 0.95596 0.83308 1.45784 1.53262 1.32234 1.04247 1.18323 0.80258 0.83917 0.83801 1.90823 1.39283 1.27767 1.87201 1.20214 1.05448 0.99762 0.87564 1.21904 0.89991 0.89827 1.02496 1.21106 0.99549 1.01349 0.89555 1.20849 0.93955 0.91178 1.00171 1.21664 1.02903 1.00653 0.84917 1.72205 1.22363 1.18003 1.33123 1.78363 1.27438 1.14684 0.91416 1.72034 1.26510 1.26668 1.21145 1.22370 0.96972 0.91532 0.96591 0.90684 0.93272 0.93915 0.93958 0.93262 0.90678 0.96956 0.97096 0.92893 0.92945 0.92873 0.74673 0.80716 0.78823 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 3 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 4 C -0.01 -0.23 3.11 29.85 0.09 -0.14 16 5 C -0.50 -26.60 8.20 25.60 0.21 -26.39 16 6 H 0.06 3.25 5.92 -2.91 -0.02 3.23 16 7 C 0.01 0.42 5.47 84.65 0.46 0.88 16 8 N -0.95 -58.04 13.96 21.45 0.30 -57.74 16 9 Si 0.93 44.53 27.47 68.60 1.88 46.41 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.25 -11.63 6.54 99.48 0.65 -10.97 16 13 C 0.14 4.50 4.56 86.38 0.39 4.89 16 14 N -0.70 -17.77 4.91 -466.48 -2.29 -20.06 16 15 C 0.55 16.50 7.77 86.63 0.67 17.17 16 16 O -0.57 -23.06 16.09 -4.13 -0.07 -23.13 16 17 C -0.12 -2.76 6.07 -18.49 -0.11 -2.87 16 18 C -0.02 -0.20 9.49 22.45 0.21 0.01 16 19 C -0.09 -0.61 9.82 21.80 0.21 -0.40 16 20 C -0.04 -0.41 10.03 22.49 0.23 -0.19 16 21 C 0.06 1.17 7.17 41.93 0.30 1.47 16 22 N -0.61 -12.34 11.45 -72.90 -0.83 -13.18 16 23 S 0.83 15.81 23.60 -56.49 -1.33 14.47 16 24 N -0.61 -17.64 10.68 -69.91 -0.75 -18.39 16 25 C 0.09 2.26 7.05 43.55 0.31 2.57 16 26 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 27 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 31 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 32 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 33 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 7.28 4.20 -92.71 -0.39 6.89 16 38 H 0.18 0.86 6.37 -2.91 -0.02 0.84 16 39 H 0.19 -0.47 8.06 -2.91 -0.02 -0.50 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -81.00 339.48 1.67 -79.33 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.64 Total: 3.88 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.11 Total: -11.61 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.57 Total: -109.36 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.13 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: 15.81 SS G_CDS: -1.33 Total: 14.47 kcal Total: -81.00 1.67 -79.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880006303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.227 kcal (2) G-P(sol) polarization free energy of solvation -80.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds