Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50696 * 109.47317 * 239.99973 * 2 1 3 5 5 H 1.08005 * 120.00182 * 239.99962 * 4 2 1 6 6 C 1.37875 * 120.00430 * 59.99954 * 4 2 1 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00488 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47322 * 59.99733 * 8 6 4 10 10 H 1.48497 * 109.47466 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47023 * 300.00068 * 8 6 4 12 12 C 1.52994 * 109.47093 * 119.99644 * 2 1 3 13 13 S 1.81400 * 109.47473 * 300.00536 * 12 2 1 14 14 O 1.42094 * 110.54536 * 68.37044 * 13 12 2 15 15 O 1.42106 * 110.54097 * 291.62332 * 13 12 2 16 16 N 1.65593 * 104.45445 * 179.97438 * 13 12 2 17 17 C 1.46984 * 125.42520 * 270.04130 * 16 13 12 18 18 C 1.54817 * 106.00833 * 199.53295 * 17 16 13 19 19 H 1.09002 * 111.71853 * 208.19859 * 18 17 16 20 20 C 1.53797 * 107.67970 * 85.35322 * 18 17 16 21 21 S 1.82685 * 105.75044 * 228.30343 * 20 18 17 22 22 C 1.82875 * 97.99028 * 1.05676 * 21 20 18 23 23 C 1.52889 * 104.19832 * 18.11731 * 22 21 20 24 24 H 1.09002 * 110.38910 * 205.27398 * 23 22 21 25 25 C 1.47005 * 125.42279 * 89.99440 * 16 13 12 26 26 H 1.08995 * 109.47409 * 300.00265 * 1 2 3 27 27 H 1.09004 * 109.47182 * 60.00416 * 1 2 3 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47478 * 299.99724 * 3 2 1 31 31 H 1.08995 * 109.47295 * 59.99665 * 3 2 1 32 32 H 0.97000 * 119.99854 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47631 * 180.02562 * 12 2 1 34 34 H 1.09005 * 109.46945 * 60.00325 * 12 2 1 35 35 H 1.08998 * 110.14591 * 318.66914 * 17 16 13 36 36 H 1.08999 * 110.14541 * 80.39654 * 17 16 13 37 37 H 1.09000 * 110.19622 * 347.37960 * 20 18 17 38 38 H 1.09000 * 110.19416 * 109.15763 * 20 18 17 39 39 H 1.08994 * 110.48832 * 136.72763 * 22 21 20 40 40 H 1.09003 * 110.48645 * 259.24831 * 22 21 20 41 41 H 1.09002 * 109.89709 * 299.98910 * 25 16 13 42 42 H 1.08997 * 109.89138 * 61.03126 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2492 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0528 -0.7406 3.9936 17 6 1.3928 -1.8824 4.6427 18 6 2.0715 -2.0383 6.0254 19 1 2.0424 -3.0704 6.3749 20 6 1.3602 -1.0894 7.0046 21 16 2.6891 -0.1833 7.8708 22 6 4.1149 -0.9410 7.0121 23 6 3.5097 -1.5529 5.7484 24 1 4.1253 -2.3798 5.3944 25 6 3.3489 -0.4994 4.6439 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7097 1.1617 -3.4844 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7489 1.2492 35 1 0.3291 -1.6798 4.7674 36 1 1.5365 -2.7857 4.0499 37 1 0.7239 -0.3929 6.4585 38 1 0.7661 -1.6608 7.7178 39 1 4.8513 -0.1809 6.7516 40 1 4.5683 -1.7131 7.6338 41 1 4.1537 -0.5997 3.9156 42 1 3.3652 0.4998 5.0792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885613366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -71.583473 kcal Electronic energy + Delta-G solvation = -24164.803980 eV Core-core repulsion = 20783.999323 eV Total energy + Delta-G solvation = -3380.804658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.60119 -36.60966 -36.30706 -35.34147 -33.24574 -31.69198 -31.50251 -26.83635 -26.79154 -26.05852 -25.74906 -25.25125 -22.18226 -20.13885 -19.50033 -18.69150 -17.59681 -16.85202 -16.44318 -15.99132 -15.49092 -15.19396 -14.82423 -14.40840 -14.16883 -13.80264 -13.57372 -13.20120 -13.08463 -12.91159 -12.83182 -12.53738 -12.23204 -12.13673 -11.67340 -11.55444 -11.46466 -11.25736 -11.18732 -11.09887 -11.05656 -10.97285 -10.73111 -10.43498 -10.30384 -10.19973 -10.11903 -9.68582 -9.60737 -8.96437 -8.64900 -8.42747 -7.85495 -6.06014 -4.18420 0.73972 1.60168 2.12012 3.04752 3.24726 3.30552 3.31784 4.01683 4.07347 4.20094 4.31756 4.40233 4.61080 4.68972 4.72869 5.01273 5.03456 5.17269 5.19235 5.30790 5.37443 5.44915 5.45760 5.60496 5.63764 5.66058 5.71304 5.81701 6.07429 6.33705 6.42943 6.66865 6.76216 6.87208 7.00919 7.28048 7.47027 7.64761 7.94934 8.06248 8.29774 8.79703 9.47063 10.95288 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.003564 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.828032 B = 7854.225624 C = 8047.795229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.606 3.394 14 O -0.959 6.959 15 O -0.956 6.956 16 N -1.018 6.018 17 C 0.123 3.877 18 C -0.098 4.098 19 H 0.108 0.892 20 C -0.069 4.069 21 S -0.287 6.287 22 C -0.064 4.064 23 C -0.100 4.100 24 H 0.105 0.895 25 C 0.124 3.876 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -7.250 17.243 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.714 4.714 13 S 2.706 3.294 14 O -0.949 6.949 15 O -0.946 6.946 16 N -0.854 5.854 17 C -0.004 4.004 18 C -0.119 4.119 19 H 0.126 0.874 20 C -0.217 4.217 21 S -0.061 6.061 22 C -0.212 4.212 23 C -0.121 4.121 24 H 0.123 0.877 25 C -0.002 4.002 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.994 -5.459 18.026 19.254 hybrid contribution 0.814 -1.939 -2.058 2.942 sum 4.808 -7.398 15.969 18.244 Atomic orbital electron populations 1.22273 0.96873 1.00607 1.02336 1.17940 0.92861 0.92240 0.89029 1.22273 0.99719 0.97780 1.02346 1.20889 1.31871 1.12130 0.89382 0.92392 1.24937 0.94860 0.94976 0.98926 1.69790 1.36187 1.22506 1.23636 0.86587 0.79144 0.79701 0.82131 1.20271 1.21139 1.20272 1.30567 1.11232 1.12806 1.16787 1.05427 0.74455 0.74673 0.74807 1.93532 1.29186 1.86533 1.85660 1.93546 1.78171 1.37342 1.85558 1.58837 1.29328 1.47112 1.50135 1.21975 0.97773 0.89033 0.91616 1.22823 0.93606 1.00243 0.95223 0.87388 1.24047 0.98238 0.99797 0.99640 1.87470 1.03479 1.59603 1.55537 1.23784 0.97931 1.02687 0.96834 1.22352 0.95863 0.98935 0.94962 0.87733 1.21632 0.85123 0.99209 0.94229 0.95415 0.88604 0.94485 0.94471 0.88606 0.95395 0.92640 0.86483 0.86469 0.89442 0.91276 0.88291 0.88435 0.87548 0.88669 0.91102 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 2 C 0.08 1.97 0.52 -155.67 -0.08 1.89 16 3 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 4 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.00 9.35 55.43 0.52 -23.48 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C -0.58 -11.20 5.12 37.15 0.19 -11.01 16 13 S 2.61 48.28 4.67 -107.50 -0.50 47.77 16 14 O -0.96 -19.86 14.92 -57.54 -0.86 -20.72 16 15 O -0.96 -20.19 15.21 -57.54 -0.88 -21.06 16 16 N -1.02 -13.96 3.62 -112.31 -0.41 -14.37 16 17 C 0.12 1.32 6.20 -2.82 -0.02 1.30 16 18 C -0.10 -0.81 3.74 -88.57 -0.33 -1.15 16 19 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 20 C -0.07 -0.66 6.65 37.57 0.25 -0.41 16 21 S -0.29 -3.10 23.05 -107.50 -2.48 -5.57 16 22 C -0.06 -0.50 6.59 37.10 0.24 -0.26 16 23 C -0.10 -0.82 3.26 -89.75 -0.29 -1.12 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 C 0.12 1.42 6.21 -3.52 -0.02 1.40 16 26 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 27 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 34 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 35 H 0.09 0.99 7.27 -51.93 -0.38 0.61 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.12 7.43 -51.93 -0.39 0.74 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 0.78 8.01 -51.93 -0.42 0.36 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -31.73 339.62 -10.90 -42.63 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.55 Total: 2.80 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 0.15 Total: -28.57 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.11 Total: -37.84 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.73 Total: -41.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -2.98 Total: 42.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.73 -10.90 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885613366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.956 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds