Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50696 * 109.47317 * 239.99973 * 2 1 3 5 5 H 1.08005 * 120.00182 * 239.99962 * 4 2 1 6 6 C 1.37875 * 120.00430 * 59.99954 * 4 2 1 7 7 N 1.31514 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00488 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47322 * 59.99733 * 8 6 4 10 10 H 1.48497 * 109.47466 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47023 * 300.00068 * 8 6 4 12 12 C 1.52994 * 109.47093 * 119.99644 * 2 1 3 13 13 S 1.81400 * 109.47473 * 300.00536 * 12 2 1 14 14 O 1.42094 * 110.54536 * 68.37044 * 13 12 2 15 15 O 1.42106 * 110.54097 * 291.62332 * 13 12 2 16 16 N 1.65593 * 104.45445 * 179.97438 * 13 12 2 17 17 C 1.46984 * 125.42520 * 270.04130 * 16 13 12 18 18 C 1.54817 * 106.00833 * 199.53295 * 17 16 13 19 19 H 1.09002 * 111.71853 * 208.19859 * 18 17 16 20 20 C 1.53797 * 107.67970 * 85.35322 * 18 17 16 21 21 S 1.82685 * 105.75044 * 228.30343 * 20 18 17 22 22 C 1.82875 * 97.99028 * 1.05676 * 21 20 18 23 23 C 1.52889 * 104.19832 * 18.11731 * 22 21 20 24 24 H 1.09002 * 110.38910 * 205.27398 * 23 22 21 25 25 C 1.47005 * 125.42279 * 89.99440 * 16 13 12 26 26 H 1.08995 * 109.47409 * 300.00265 * 1 2 3 27 27 H 1.09004 * 109.47182 * 60.00416 * 1 2 3 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47478 * 299.99724 * 3 2 1 31 31 H 1.08995 * 109.47295 * 59.99665 * 3 2 1 32 32 H 0.97000 * 119.99854 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47631 * 180.02562 * 12 2 1 34 34 H 1.09005 * 109.46945 * 60.00325 * 12 2 1 35 35 H 1.08998 * 110.14591 * 318.66914 * 17 16 13 36 36 H 1.08999 * 110.14541 * 80.39654 * 17 16 13 37 37 H 1.09000 * 110.19622 * 347.37960 * 20 18 17 38 38 H 1.09000 * 110.19416 * 109.15763 * 20 18 17 39 39 H 1.08994 * 110.48832 * 136.72763 * 22 21 20 40 40 H 1.09003 * 110.48645 * 259.24831 * 22 21 20 41 41 H 1.09002 * 109.89709 * 299.98910 * 25 16 13 42 42 H 1.08997 * 109.89138 * 61.03126 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2492 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0528 -0.7406 3.9936 17 6 1.3928 -1.8824 4.6427 18 6 2.0715 -2.0383 6.0254 19 1 2.0424 -3.0704 6.3749 20 6 1.3602 -1.0894 7.0046 21 16 2.6891 -0.1833 7.8708 22 6 4.1149 -0.9410 7.0121 23 6 3.5097 -1.5529 5.7484 24 1 4.1253 -2.3798 5.3944 25 6 3.3489 -0.4994 4.6439 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.7097 1.1617 -3.4844 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7489 1.2492 35 1 0.3291 -1.6798 4.7674 36 1 1.5365 -2.7857 4.0499 37 1 0.7239 -0.3929 6.4585 38 1 0.7661 -1.6608 7.7178 39 1 4.8513 -0.1809 6.7516 40 1 4.5683 -1.7131 7.6338 41 1 4.1537 -0.5997 3.9156 42 1 3.3652 0.4998 5.0792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885613366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -91.775485 kcal Electronic energy + Delta-G solvation = -24165.679572 eV Core-core repulsion = 20783.999323 eV Total energy + Delta-G solvation = -3381.680249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39515 -38.17574 -38.15045 -36.92987 -34.14408 -33.64022 -32.22851 -28.42702 -27.72409 -27.59486 -27.27182 -26.93057 -23.02985 -21.31746 -20.84620 -19.97430 -18.92284 -17.95846 -17.68220 -17.35486 -16.91142 -16.74309 -16.50477 -15.42001 -15.13176 -14.87434 -14.71887 -14.51058 -14.45217 -14.22316 -14.07365 -13.86473 -13.72487 -13.20140 -13.09280 -12.97352 -12.87543 -12.81846 -12.54730 -12.51445 -12.28909 -12.20569 -12.15966 -11.99257 -11.93643 -11.83201 -11.59135 -11.40226 -10.92585 -10.66374 -10.42341 -9.87776 -8.66756 -8.03831 -6.23082 -0.71127 0.89830 1.44064 1.45558 1.45792 1.53213 1.78066 2.43816 2.87642 3.06350 3.18919 3.31335 3.52630 3.60015 3.95720 3.98898 4.07720 4.14038 4.33638 4.38833 4.50928 4.56713 4.60513 4.67323 4.71856 4.73156 4.82555 4.83450 4.93169 4.95936 4.97966 5.03545 5.05953 5.15101 5.35800 5.43242 5.51563 5.62935 5.94304 6.09015 6.31965 6.81505 7.45475 8.95934 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.003564 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.828032 B = 7854.225624 C = 8047.795229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.581 4.581 13 S 2.624 3.376 14 O -0.987 6.987 15 O -0.989 6.989 16 N -1.015 6.015 17 C 0.109 3.891 18 C -0.086 4.086 19 H 0.147 0.853 20 C -0.063 4.063 21 S -0.353 6.353 22 C -0.048 4.048 23 C -0.091 4.091 24 H 0.141 0.859 25 C 0.111 3.889 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -10.187 18.182 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.714 4.714 13 S 2.724 3.276 14 O -0.977 6.977 15 O -0.979 6.979 16 N -0.853 5.853 17 C -0.016 4.016 18 C -0.107 4.107 19 H 0.165 0.835 20 C -0.211 4.211 21 S -0.128 6.128 22 C -0.196 4.196 23 C -0.112 4.112 24 H 0.159 0.841 25 C -0.014 4.014 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.710 -8.396 18.961 21.508 hybrid contribution 0.281 -1.003 -2.279 2.506 sum 5.990 -9.399 16.682 20.063 Atomic orbital electron populations 1.22197 0.97730 1.00514 1.01217 1.17938 0.92371 0.92102 0.91003 1.22201 0.99812 0.98486 1.01206 1.21252 1.31796 1.12376 0.90285 0.91719 1.25697 0.95132 0.95636 1.01746 1.69942 1.37144 1.23691 1.23947 0.85649 0.78756 0.78747 0.78699 1.19564 1.21419 1.19643 1.30474 1.12437 1.13361 1.15127 1.04488 0.73642 0.74268 0.75213 1.93487 1.31099 1.86928 1.86212 1.93496 1.78568 1.39694 1.86178 1.58373 1.30579 1.47714 1.48679 1.22332 0.97324 0.88625 0.93329 1.22931 0.92944 1.01814 0.93044 0.83502 1.24081 0.97631 0.99438 0.99953 1.87727 1.06606 1.61608 1.56831 1.23893 0.96164 1.03134 0.96412 1.22400 0.96387 0.98681 0.93726 0.84123 1.21925 0.84218 0.99615 0.95657 0.95150 0.91081 0.93969 0.94098 0.91061 0.95185 0.92910 0.84609 0.84407 0.90624 0.88623 0.90970 0.86589 0.87202 0.85889 0.89603 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 7.77 71.98 0.56 -7.33 16 2 C 0.07 3.27 0.52 -52.93 -0.03 3.24 16 3 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 4 C -0.52 -26.64 8.01 25.60 0.21 -26.44 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.91 5.15 84.65 0.44 1.35 16 7 N -0.91 -50.25 9.35 21.45 0.20 -50.05 16 8 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 C -0.58 -21.56 5.12 71.98 0.37 -21.20 16 13 S 2.62 95.98 4.67 -56.49 -0.26 95.72 16 14 O -0.99 -41.07 14.92 -127.65 -1.91 -42.97 16 15 O -0.99 -42.22 15.21 -127.65 -1.94 -44.17 16 16 N -1.01 -26.01 3.62 -509.23 -1.84 -27.85 16 17 C 0.11 2.05 6.20 86.91 0.54 2.59 16 18 C -0.09 -1.11 3.74 -9.47 -0.04 -1.14 16 19 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 20 C -0.06 -1.11 6.65 72.25 0.48 -0.63 16 21 S -0.35 -7.25 23.05 -56.49 -1.30 -8.55 16 22 C -0.05 -0.60 6.59 71.95 0.47 -0.12 16 23 C -0.09 -1.12 3.26 -10.23 -0.03 -1.15 16 24 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 25 C 0.11 2.29 6.21 86.44 0.54 2.83 16 26 H 0.03 1.45 5.46 -2.39 -0.01 1.43 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 28 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 31 H 0.03 1.44 5.46 -2.39 -0.01 1.43 16 32 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 33 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 34 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.08 1.60 7.27 -2.39 -0.02 1.59 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.64 7.43 -2.39 -0.02 1.63 16 38 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 Total: -1.00 -70.53 339.62 0.04 -70.49 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.01 Total: 19.19 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 4.06 Total: -55.41 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.64 Total: -77.90 kcal Atomic # 8 Polarization: -83.29 SS G_CDS: -3.85 Total: -87.14 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 88.74 SS G_CDS: -1.57 Total: 87.17 kcal Total: -70.53 0.04 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885613366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.290 kcal (2) G-P(sol) polarization free energy of solvation -70.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds