Wall clock time and date at job start Tue Mar 31 2020 12:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47654 * 240.00321 * 2 1 3 5 5 N 1.33638 * 125.71465 * 59.68923 * 4 2 1 6 6 C 1.32461 * 109.24702 * 179.83033 * 5 4 2 7 7 C 1.40962 * 132.31133 * 180.12577 * 6 5 4 8 8 C 1.35983 * 119.34946 * 180.34125 * 7 6 5 9 9 C 1.40580 * 119.76524 * 359.97438 * 8 7 6 10 10 C 1.34866 * 120.34124 * 359.97438 * 9 8 7 11 11 N 1.36720 * 120.57759 * 0.04350 * 10 9 8 12 12 C 1.35738 * 125.71709 * 240.00648 * 4 2 1 13 13 N 1.39996 * 126.46482 * 359.97094 * 12 4 2 14 14 C 1.34772 * 120.00023 * 108.37760 * 13 12 4 15 15 O 1.21314 * 119.99950 * 4.96155 * 14 13 12 16 16 C 1.50702 * 119.99804 * 184.95920 * 14 13 12 17 17 S 1.81000 * 109.46945 * 179.97438 * 16 14 13 18 18 C 1.76205 * 100.00221 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99562 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99991 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00467 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99608 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47044 * 60.00121 * 22 20 18 24 24 H 1.48502 * 109.46918 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47065 * 300.00145 * 22 20 18 26 26 H 1.08995 * 109.47463 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.46852 * 60.00096 * 1 2 3 28 28 H 1.08994 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47276 * 120.00233 * 2 1 3 30 30 H 1.09011 * 109.46859 * 60.00228 * 3 2 1 31 31 H 1.08998 * 109.47330 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47252 * 300.00247 * 3 2 1 33 33 H 1.08002 * 120.32361 * 0.31318 * 7 6 5 34 34 H 1.08003 * 120.12000 * 179.97438 * 8 7 6 35 35 H 1.08006 * 119.83386 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.71205 * 180.02562 * 10 9 8 37 37 H 0.97002 * 119.99704 * 288.37812 * 13 12 4 38 38 H 1.09003 * 109.47349 * 300.00071 * 16 14 13 39 39 H 1.08997 * 109.47430 * 60.00344 * 16 14 13 40 40 H 0.96997 * 120.00527 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.7763 -0.3580 -2.4938 6 6 2.3815 -1.2038 -3.3142 7 6 2.4389 -1.2848 -4.7203 8 6 3.1487 -2.2886 -5.3016 9 6 3.8145 -3.2294 -4.4967 10 6 3.7530 -3.1408 -3.1524 11 7 3.0432 -2.1376 -2.5533 12 6 2.8160 -1.8186 -1.2412 13 7 3.3018 -2.5050 -0.1219 14 6 2.8010 -3.7151 0.1962 15 8 1.9949 -4.2495 -0.5361 16 6 3.2426 -4.4043 1.4616 17 16 2.3979 -5.9986 1.6064 18 6 3.0800 -6.5693 3.1276 19 1 3.7965 -5.9611 3.6599 20 6 2.6974 -7.8007 3.6410 21 7 1.8247 -8.5420 2.9920 22 14 3.4212 -8.4059 5.2534 23 1 3.0880 -7.4462 6.3366 24 1 2.8537 -9.7384 5.5814 25 1 4.8965 -8.5137 5.1241 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.9239 -0.5572 -5.3300 34 1 3.2007 -2.3628 -6.3778 35 1 4.3789 -4.0268 -4.9573 36 1 4.2688 -3.8689 -2.5438 37 1 3.9989 -2.1096 0.4247 38 1 4.3202 -4.5651 1.4307 39 1 2.9925 -3.7819 2.3207 40 1 1.5576 -9.4028 3.3506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887071353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:22 Heat of formation + Delta-G solvation = 22.346910 kcal Electronic energy + Delta-G solvation = -23848.894512 eV Core-core repulsion = 20369.011781 eV Total energy + Delta-G solvation = -3479.882731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.93684 -40.71744 -38.78116 -36.04376 -35.92323 -34.60431 -34.06733 -31.28821 -30.78991 -28.70561 -28.00859 -27.66367 -25.04385 -23.85040 -23.52718 -22.01385 -20.77839 -19.99570 -19.27235 -18.22255 -18.01731 -17.18701 -16.89365 -16.74487 -16.52239 -16.46225 -15.97622 -15.70997 -15.19771 -15.01568 -14.90525 -14.52975 -14.20473 -13.78818 -13.31205 -13.19810 -13.10602 -12.87924 -12.84499 -12.66411 -12.62609 -12.36474 -12.07913 -12.01094 -11.95604 -11.79063 -11.53281 -11.30302 -11.14419 -10.67080 -10.32844 -9.68839 -8.80144 -8.70487 -8.36505 -6.15588 -0.20222 0.15863 1.05830 1.23764 1.39582 1.43493 1.50951 1.60010 1.68210 2.21807 2.24912 2.53155 2.98221 3.13167 3.25441 3.39163 3.76007 3.84119 3.87903 4.06903 4.15301 4.19781 4.25162 4.26298 4.42414 4.48243 4.61792 4.82254 4.83559 4.93731 4.97703 4.98983 5.09274 5.11336 5.21703 5.33378 5.39110 5.40357 5.52221 5.66119 6.04202 6.16823 6.18332 6.74102 6.99868 7.05079 8.72353 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.003313 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.997752 B = 8449.408513 C = 9644.299614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 C -0.129 4.129 4 C 0.080 3.920 5 N -0.505 5.505 6 C 0.217 3.783 7 C -0.100 4.100 8 C -0.079 4.079 9 C -0.131 4.131 10 C 0.035 3.965 11 N -0.366 5.366 12 C 0.122 3.878 13 N -0.627 5.627 14 C 0.539 3.461 15 O -0.547 6.547 16 C -0.125 4.125 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.086 0.914 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.151 0.849 37 H 0.430 0.570 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 18.472 -12.139 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.186 4.186 4 C -0.056 4.056 5 N -0.225 5.225 6 C -0.026 4.026 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.151 4.151 10 C -0.087 4.087 11 N -0.040 5.040 12 C -0.082 4.082 13 N -0.282 5.282 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.276 4.276 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.104 0.896 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.185 1.185 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.191 0.809 34 H 0.204 0.796 35 H 0.201 0.799 36 H 0.168 0.832 37 H 0.271 0.729 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.147 18.049 -13.478 23.107 hybrid contribution 1.803 -0.924 2.205 2.995 sum 6.950 17.125 -11.272 21.648 Atomic orbital electron populations 1.21712 0.93855 1.00752 1.02943 1.19680 0.96269 0.96669 0.90990 1.21695 1.00877 0.93253 1.02796 1.21109 0.95705 0.94400 0.94406 1.70600 1.24709 1.27351 0.99882 1.21428 0.97441 0.88968 0.94751 1.20682 1.01981 1.01853 0.87431 1.21580 0.94043 0.91878 1.02767 1.21347 1.01621 1.01774 0.90404 1.21954 0.98160 0.92310 0.96263 1.43073 1.33112 1.20502 1.07307 1.17629 1.11635 1.00277 0.78652 1.42404 1.42210 1.18580 1.25033 1.20568 0.79808 0.80491 0.86469 1.90740 1.34149 1.64848 1.52420 1.23325 1.05699 1.00991 0.97606 1.85653 1.59211 1.15507 1.31514 1.23178 1.30617 1.07490 1.08216 0.89607 1.26109 0.95054 0.95650 1.02143 1.70168 1.31753 1.12317 1.40571 0.85018 0.78757 0.77427 0.76903 1.18626 1.20548 1.18534 0.89858 0.92384 0.95291 0.89524 0.90165 0.92568 0.92670 0.80878 0.79608 0.79928 0.83190 0.72861 0.86359 0.86355 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.18 71.98 0.66 -2.66 16 2 C -0.02 -0.40 3.32 -11.54 -0.04 -0.44 16 3 C -0.13 -2.41 9.17 71.98 0.66 -1.75 16 4 C 0.08 2.39 5.59 41.70 0.23 2.62 16 5 N -0.50 -15.61 11.31 -181.65 -2.05 -17.67 16 6 C 0.22 6.21 7.81 134.02 1.05 7.26 16 7 C -0.10 -1.95 10.10 22.41 0.23 -1.73 16 8 C -0.08 -1.13 10.06 22.32 0.22 -0.91 16 9 C -0.13 -2.24 9.98 22.07 0.22 -2.02 16 10 C 0.04 0.89 10.96 83.16 0.91 1.80 16 11 N -0.37 -10.89 2.96 -348.55 -1.03 -11.92 16 12 C 0.12 3.76 6.67 130.52 0.87 4.63 16 13 N -0.63 -17.62 5.10 -307.18 -1.57 -19.19 16 14 C 0.54 19.93 7.81 87.66 0.68 20.61 16 15 O -0.55 -25.74 15.84 -3.14 -0.05 -25.79 16 16 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 17 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 18 C -0.55 -30.44 9.50 67.95 0.65 -29.79 16 19 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.02 0.86 5.49 84.86 0.47 1.32 16 21 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 22 Si 1.00 42.69 29.55 68.60 2.03 44.71 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.43 8.59 8.83 -92.71 -0.82 7.77 16 38 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 39 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.45 361.82 3.94 -77.51 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.24 Total: 21.78 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 7.25 Total: -5.34 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.37 Total: -103.81 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -81.45 3.94 -77.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887071353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.856 kcal (2) G-P(sol) polarization free energy of solvation -81.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds