Wall clock time and date at job start Tue Mar 31 2020 12:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38037 * 126.29057 * 2 1 4 4 C 1.47439 * 126.41431 * 359.71350 * 3 2 1 5 5 O 1.21598 * 120.00002 * 322.89787 * 4 3 2 6 6 N 1.34772 * 119.99549 * 142.89330 * 4 3 2 7 7 C 1.46495 * 120.00650 * 4.56914 * 6 4 3 8 8 C 1.46505 * 119.99885 * 184.56643 * 6 4 3 9 9 C 1.50703 * 109.47201 * 89.99945 * 8 6 4 10 10 C 1.33385 * 125.20443 * 90.00309 * 9 8 6 11 11 C 1.38414 * 114.92315 * 179.97438 * 10 9 8 12 12 C 1.33390 * 114.92055 * 359.97438 * 11 10 9 13 13 S 1.75880 * 125.20130 * 269.69840 * 9 8 6 14 14 C 1.41284 * 107.17379 * 179.73774 * 3 2 1 15 15 N 1.30450 * 108.02178 * 359.97438 * 14 3 2 16 16 N 1.34261 * 126.29016 * 179.68750 * 2 1 3 17 17 C 1.46494 * 125.75814 * 0.24486 * 16 2 1 18 18 C 1.50703 * 109.47264 * 89.99785 * 17 16 2 19 19 H 1.07996 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99878 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00250 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47153 * 89.99424 * 22 20 18 24 24 H 1.48497 * 109.47532 * 210.00218 * 22 20 18 25 25 H 1.48504 * 109.46883 * 330.00073 * 22 20 18 26 26 H 1.09001 * 109.47040 * 90.02554 * 1 2 3 27 27 H 1.09007 * 109.47015 * 210.02249 * 1 2 3 28 28 H 1.08992 * 109.47606 * 330.02421 * 1 2 3 29 29 H 1.09000 * 109.47558 * 84.81187 * 7 6 4 30 30 H 1.09003 * 109.47295 * 204.82146 * 7 6 4 31 31 H 1.09004 * 109.46873 * 324.81339 * 7 6 4 32 32 H 1.08992 * 109.47529 * 210.00393 * 8 6 4 33 33 H 1.09004 * 109.47145 * 330.00238 * 8 6 4 34 34 H 1.08007 * 122.53438 * 359.95495 * 10 9 8 35 35 H 1.08000 * 122.54176 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.20164 * 180.02562 * 12 11 10 37 37 H 1.08004 * 125.99452 * 179.97438 * 14 3 2 38 38 H 1.08994 * 109.47584 * 210.00236 * 17 16 2 39 39 H 1.09011 * 109.47031 * 330.00034 * 17 16 2 40 40 H 0.97006 * 120.00110 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 -0.0059 5 8 0.9056 2.8493 -0.6461 6 7 2.5714 3.4425 0.6983 7 6 3.8080 3.0670 1.3880 8 6 2.0799 4.8206 0.7741 9 6 1.1631 4.9624 1.9617 10 6 1.5465 5.3040 3.1927 11 6 0.5249 5.3717 4.1241 12 6 -0.6884 5.0855 3.6494 13 16 -0.5773 4.7101 1.9347 14 6 3.6589 0.6499 0.0062 15 7 3.6340 -0.6543 0.0102 16 7 2.3017 -1.0822 0.0059 17 6 1.8502 -2.4758 0.0084 18 6 1.7002 -2.9578 -1.4115 19 1 1.9197 -2.2927 -2.2336 20 6 1.2827 -4.2480 -1.6611 21 7 1.0150 -5.0578 -0.6600 22 14 1.0975 -4.8458 -3.4211 23 1 2.3801 -5.4362 -3.8809 24 1 0.0281 -5.8741 -3.4847 25 1 0.7370 -3.7020 -4.2970 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5134 29 1 4.6445 3.1249 0.6915 30 1 3.9808 3.7484 2.2210 31 1 3.7189 2.0480 1.7648 32 1 2.9237 5.5018 0.8831 33 1 1.5335 5.0621 -0.1377 34 1 2.5763 5.5117 3.4437 35 1 0.6970 5.6369 5.1568 36 1 -1.5999 5.0879 4.2285 37 1 4.5449 1.2677 0.0074 38 1 2.5830 -3.0943 0.5266 39 1 0.8897 -2.5456 0.5192 40 1 0.7216 -5.9656 -0.8356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887676174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:45 Heat of formation + Delta-G solvation = 74.740015 kcal Electronic energy + Delta-G solvation = -24011.365144 eV Core-core repulsion = 20533.754349 eV Total energy + Delta-G solvation = -3477.610795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85972 -39.18764 -37.77540 -35.38979 -33.87906 -32.15267 -31.55724 -30.63291 -27.71912 -27.10429 -26.73191 -25.49689 -23.61806 -23.07148 -21.33292 -19.94202 -19.25411 -18.40415 -17.37343 -16.84845 -16.70545 -15.98306 -15.68980 -15.28889 -14.93568 -14.58224 -14.21711 -13.71641 -13.40377 -13.21969 -12.97915 -12.86191 -12.80200 -12.52401 -12.45489 -12.33794 -12.20975 -12.06472 -11.66534 -11.52231 -11.47584 -11.08602 -10.88365 -10.71932 -10.35662 -10.25857 -9.91147 -9.50394 -8.85531 -8.69950 -8.65886 -8.53725 -8.51794 -7.87256 -6.32548 -4.40142 0.85872 1.58993 1.99196 2.26373 2.55724 2.82158 3.17334 3.19688 3.25919 3.30641 3.44981 3.70790 4.25744 4.67193 4.81483 4.93847 5.02074 5.09469 5.19315 5.25515 5.27969 5.41419 5.47286 5.51275 5.65618 5.69349 5.75725 5.95178 5.98081 6.06620 6.15231 6.35231 6.39783 6.47050 6.56637 6.81437 6.91114 7.17682 7.52535 7.57964 7.78419 7.80738 8.39355 8.51655 8.65905 9.26836 10.75598 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.003105 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.473951 B = 9014.460569 C = 9450.689512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.157 3.843 3 C -0.328 4.328 4 C 0.605 3.395 5 O -0.543 6.543 6 N -0.615 5.615 7 C 0.079 3.921 8 C 0.187 3.813 9 C -0.194 4.194 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.225 4.225 13 S 0.136 5.864 14 C 0.054 3.946 15 N -0.296 5.296 16 N -0.313 5.313 17 C 0.252 3.748 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.271 1.271 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 20.465 8.836 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.020 3.980 3 C -0.343 4.343 4 C 0.396 3.604 5 O -0.420 6.420 6 N -0.349 5.349 7 C -0.064 4.064 8 C 0.063 3.937 9 C -0.313 4.313 10 C -0.164 4.164 11 C -0.170 4.170 12 C -0.361 4.361 13 S 0.400 5.600 14 C -0.132 4.132 15 N -0.117 5.117 16 N -0.090 5.090 17 C 0.135 3.865 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.195 1.195 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.044 18.764 7.424 20.179 hybrid contribution 0.599 0.610 0.402 0.944 sum 0.555 19.374 7.826 20.902 Atomic orbital electron populations 1.20432 0.87086 1.02937 1.04038 1.21337 0.94713 0.86549 0.95360 1.19584 0.93407 0.92256 1.29068 1.17476 0.81619 0.84085 0.77185 1.90717 1.27437 1.81148 1.42701 1.47681 1.25884 1.09085 1.52216 1.21969 0.85447 1.02394 0.96565 1.19743 0.95768 0.83495 0.94715 1.25029 0.97723 1.08571 0.99953 1.20080 1.00543 1.03938 0.91877 1.20117 0.91958 1.04075 1.00898 1.25770 1.02055 1.09187 0.99071 1.84747 1.03151 1.66663 1.05456 1.23888 0.96320 0.92439 1.00558 1.77141 0.98566 1.12224 1.23728 1.49314 1.02443 1.08183 1.49089 1.19834 0.96330 0.70954 0.99418 1.21262 1.47305 0.98135 0.91064 0.91629 1.24918 0.94431 0.96011 0.98287 1.69913 1.44574 1.07232 1.31071 0.86325 0.78071 0.78655 0.83509 1.20255 1.20798 1.19549 0.89469 0.90702 0.90389 0.92548 0.91556 0.90097 0.88866 0.88700 0.84597 0.84655 0.82187 0.80509 0.92555 0.92656 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.54 36.01 0.34 -1.23 16 2 C 0.16 3.22 7.00 -81.60 -0.57 2.64 16 3 C -0.33 -6.06 5.36 -105.07 -0.56 -6.62 16 4 C 0.61 10.18 7.35 -12.52 -0.09 10.09 16 5 O -0.54 -10.39 15.80 5.28 0.08 -10.31 16 6 N -0.62 -7.83 2.86 -184.23 -0.53 -8.35 16 7 C 0.08 0.78 9.03 59.84 0.54 1.32 16 8 C 0.19 2.02 5.91 -5.19 -0.03 1.99 16 9 C -0.19 -2.16 6.09 -36.00 -0.22 -2.38 16 10 C -0.13 -1.28 10.05 -41.21 -0.41 -1.70 16 11 C -0.14 -1.32 10.18 -41.21 -0.42 -1.74 16 12 C -0.22 -2.24 11.23 29.04 0.33 -1.91 16 13 S 0.14 1.62 23.33 -107.50 -2.51 -0.89 16 14 C 0.05 0.95 9.72 -16.98 -0.17 0.79 16 15 N -0.30 -6.38 12.50 30.86 0.39 -6.00 16 16 N -0.31 -7.10 3.56 -57.78 -0.21 -7.31 16 17 C 0.25 6.29 5.97 -5.20 -0.03 6.25 16 18 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 19 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 22 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.07 1.31 7.05 -51.93 -0.37 0.95 16 28 H 0.08 1.31 7.64 -51.93 -0.40 0.91 16 29 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 30 H 0.07 0.49 8.03 -51.93 -0.42 0.07 16 31 H 0.08 0.92 5.87 -51.93 -0.31 0.62 16 32 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.09 1.14 7.36 -51.93 -0.38 0.76 16 34 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.18 2.35 6.28 -52.48 -0.33 2.02 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.06 1.37 7.01 -51.92 -0.36 1.00 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -31.55 355.66 -8.43 -39.98 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.02 Total: 1.24 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.72 Total: -5.75 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.39 Total: -45.61 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.55 -8.43 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887676174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.724 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds