Wall clock time and date at job start Tue Mar 31 2020 12:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38037 * 126.29057 * 2 1 4 4 C 1.47439 * 126.41431 * 359.71350 * 3 2 1 5 5 O 1.21598 * 120.00002 * 322.89787 * 4 3 2 6 6 N 1.34772 * 119.99549 * 142.89330 * 4 3 2 7 7 C 1.46495 * 120.00650 * 4.56914 * 6 4 3 8 8 C 1.46505 * 119.99885 * 184.56643 * 6 4 3 9 9 C 1.50703 * 109.47201 * 89.99945 * 8 6 4 10 10 C 1.33385 * 125.20443 * 90.00309 * 9 8 6 11 11 C 1.38414 * 114.92315 * 179.97438 * 10 9 8 12 12 C 1.33390 * 114.92055 * 359.97438 * 11 10 9 13 13 S 1.75880 * 125.20130 * 269.69840 * 9 8 6 14 14 C 1.41284 * 107.17379 * 179.73774 * 3 2 1 15 15 N 1.30450 * 108.02178 * 359.97438 * 14 3 2 16 16 N 1.34261 * 126.29016 * 179.68750 * 2 1 3 17 17 C 1.46494 * 125.75814 * 0.24486 * 16 2 1 18 18 C 1.50703 * 109.47264 * 89.99785 * 17 16 2 19 19 H 1.07996 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99878 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00250 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47153 * 89.99424 * 22 20 18 24 24 H 1.48497 * 109.47532 * 210.00218 * 22 20 18 25 25 H 1.48504 * 109.46883 * 330.00073 * 22 20 18 26 26 H 1.09001 * 109.47040 * 90.02554 * 1 2 3 27 27 H 1.09007 * 109.47015 * 210.02249 * 1 2 3 28 28 H 1.08992 * 109.47606 * 330.02421 * 1 2 3 29 29 H 1.09000 * 109.47558 * 84.81187 * 7 6 4 30 30 H 1.09003 * 109.47295 * 204.82146 * 7 6 4 31 31 H 1.09004 * 109.46873 * 324.81339 * 7 6 4 32 32 H 1.08992 * 109.47529 * 210.00393 * 8 6 4 33 33 H 1.09004 * 109.47145 * 330.00238 * 8 6 4 34 34 H 1.08007 * 122.53438 * 359.95495 * 10 9 8 35 35 H 1.08000 * 122.54176 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.20164 * 180.02562 * 12 11 10 37 37 H 1.08004 * 125.99452 * 179.97438 * 14 3 2 38 38 H 1.08994 * 109.47584 * 210.00236 * 17 16 2 39 39 H 1.09011 * 109.47031 * 330.00034 * 17 16 2 40 40 H 0.97006 * 120.00110 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8857 2.5203 -0.0059 5 8 0.9056 2.8493 -0.6461 6 7 2.5714 3.4425 0.6983 7 6 3.8080 3.0670 1.3880 8 6 2.0799 4.8206 0.7741 9 6 1.1631 4.9624 1.9617 10 6 1.5465 5.3040 3.1927 11 6 0.5249 5.3717 4.1241 12 6 -0.6884 5.0855 3.6494 13 16 -0.5773 4.7101 1.9347 14 6 3.6589 0.6499 0.0062 15 7 3.6340 -0.6543 0.0102 16 7 2.3017 -1.0822 0.0059 17 6 1.8502 -2.4758 0.0084 18 6 1.7002 -2.9578 -1.4115 19 1 1.9197 -2.2927 -2.2336 20 6 1.2827 -4.2480 -1.6611 21 7 1.0150 -5.0578 -0.6600 22 14 1.0975 -4.8458 -3.4211 23 1 2.3801 -5.4362 -3.8809 24 1 0.0281 -5.8741 -3.4847 25 1 0.7370 -3.7020 -4.2970 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5134 29 1 4.6445 3.1249 0.6915 30 1 3.9808 3.7484 2.2210 31 1 3.7189 2.0480 1.7648 32 1 2.9237 5.5018 0.8831 33 1 1.5335 5.0621 -0.1377 34 1 2.5763 5.5117 3.4437 35 1 0.6970 5.6369 5.1568 36 1 -1.5999 5.0879 4.2285 37 1 4.5449 1.2677 0.0074 38 1 2.5830 -3.0943 0.5266 39 1 0.8897 -2.5456 0.5192 40 1 0.7216 -5.9656 -0.8356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887676174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:44 Heat of formation + Delta-G solvation = 56.229212 kcal Electronic energy + Delta-G solvation = -24012.167833 eV Core-core repulsion = 20533.754349 eV Total energy + Delta-G solvation = -3478.413484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36525 -40.38389 -38.62051 -36.49325 -35.78447 -33.88077 -32.94030 -31.77972 -29.24794 -28.32018 -28.06179 -26.55375 -25.34680 -24.09705 -22.66643 -21.30944 -20.18747 -19.72661 -18.85869 -18.22781 -18.09335 -17.06615 -16.98956 -16.47250 -16.34498 -16.15693 -15.59202 -15.08052 -14.77382 -14.39819 -14.21880 -13.91833 -13.85130 -13.72397 -13.61823 -13.58839 -13.44833 -13.27480 -13.18628 -12.96197 -12.83037 -12.70758 -12.31771 -12.28684 -11.84750 -11.80096 -11.51477 -10.85434 -10.76835 -10.24632 -9.77394 -9.57369 -9.40952 -9.37132 -8.38572 -6.54806 0.07678 0.73895 0.79912 1.22040 1.34975 1.36390 1.39301 1.48278 1.65971 1.82567 2.21045 2.31977 2.43907 2.93400 3.69276 3.72602 3.90361 4.01797 4.15371 4.26251 4.34334 4.38029 4.48569 4.54466 4.57910 4.73528 4.76307 4.80336 4.83596 4.90321 4.95467 5.02729 5.14629 5.23500 5.39807 5.48539 5.56705 5.66260 5.70707 5.74665 6.05404 6.40347 6.54394 6.84764 7.16271 7.26984 8.69133 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.003105 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.473951 B = 9014.460569 C = 9450.689512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.136 3.864 3 C -0.325 4.325 4 C 0.603 3.397 5 O -0.574 6.574 6 N -0.604 5.604 7 C 0.070 3.930 8 C 0.187 3.813 9 C -0.205 4.205 10 C -0.122 4.122 11 C -0.143 4.143 12 C -0.221 4.221 13 S 0.062 5.938 14 C 0.077 3.923 15 N -0.335 5.335 16 N -0.337 5.337 17 C 0.269 3.731 18 C -0.556 4.556 19 H 0.049 0.951 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.224 0.776 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 22.484 9.637 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.001 3.999 3 C -0.340 4.340 4 C 0.392 3.608 5 O -0.454 6.454 6 N -0.336 5.336 7 C -0.071 4.071 8 C 0.063 3.937 9 C -0.324 4.324 10 C -0.153 4.153 11 C -0.173 4.173 12 C -0.357 4.357 13 S 0.325 5.675 14 C -0.109 4.109 15 N -0.155 5.155 16 N -0.115 5.115 17 C 0.150 3.850 18 C -0.595 4.595 19 H 0.068 0.932 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.196 1.196 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.240 0.760 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.518 20.819 8.261 22.449 hybrid contribution 0.179 0.149 0.279 0.363 sum 1.697 20.968 8.539 22.703 Atomic orbital electron populations 1.20396 0.86231 1.03398 1.03741 1.21808 0.95653 0.86772 0.95670 1.19904 0.93535 0.92966 1.27606 1.17315 0.81695 0.83967 0.77782 1.90707 1.28833 1.81501 1.44368 1.47703 1.26034 1.09151 1.50720 1.22229 0.84563 1.02290 0.98053 1.19939 0.97005 0.82732 0.93989 1.25041 0.96395 1.10185 1.00770 1.20457 1.02027 1.01852 0.90977 1.20515 0.91521 1.03122 1.02186 1.26003 1.03355 1.08885 0.97430 1.85030 1.05764 1.68386 1.08300 1.24582 0.97458 0.91395 0.97443 1.77089 0.98256 1.14303 1.25860 1.49042 1.03326 1.07614 1.51498 1.19341 0.95261 0.72396 0.98006 1.21397 1.47932 0.98485 0.91641 0.93249 1.25704 0.93791 0.95943 1.02209 1.69989 1.44801 1.07658 1.32916 0.85370 0.78406 0.78178 0.78662 1.19720 1.19474 1.19641 0.90083 0.90773 0.89262 0.90109 0.88286 0.91811 0.84752 0.90553 0.81553 0.81977 0.80506 0.76026 0.94953 0.93232 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.99 9.54 71.24 0.68 -2.32 16 2 C 0.14 5.70 7.00 42.14 0.29 5.99 16 3 C -0.32 -11.84 5.36 -20.15 -0.11 -11.95 16 4 C 0.60 19.70 7.35 86.67 0.64 20.34 16 5 O -0.57 -22.14 15.80 -4.02 -0.06 -22.20 16 6 N -0.60 -13.81 2.86 -855.03 -2.44 -16.25 16 7 C 0.07 1.09 9.03 127.77 1.15 2.24 16 8 C 0.19 3.55 5.91 85.63 0.51 4.05 16 9 C -0.21 -4.14 6.09 24.59 0.15 -3.99 16 10 C -0.12 -1.90 10.05 21.21 0.21 -1.69 16 11 C -0.14 -2.25 10.18 21.21 0.22 -2.03 16 12 C -0.22 -4.05 11.23 66.72 0.75 -3.30 16 13 S 0.06 1.47 23.33 -56.49 -1.32 0.15 16 14 C 0.08 2.61 9.72 85.65 0.83 3.44 16 15 N -0.34 -14.51 12.50 -56.27 -0.70 -15.21 16 16 N -0.34 -15.77 3.56 -336.70 -1.20 -16.96 16 17 C 0.27 14.01 5.97 85.64 0.51 14.52 16 18 C -0.56 -31.18 9.39 25.60 0.24 -30.94 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.03 1.37 5.46 84.65 0.46 1.83 16 21 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 22 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.07 2.74 7.05 -2.38 -0.02 2.72 16 28 H 0.09 3.09 7.64 -2.39 -0.02 3.08 16 29 H 0.08 0.90 7.31 -2.39 -0.02 0.89 16 30 H 0.10 0.93 8.03 -2.39 -0.02 0.91 16 31 H 0.06 1.25 5.87 -2.39 -0.01 1.24 16 32 H 0.13 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.08 1.77 7.36 -2.39 -0.02 1.75 16 34 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.22 5.12 6.28 -2.91 -0.02 5.10 16 38 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 2.58 7.01 -2.38 -0.02 2.57 16 40 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -70.95 355.66 4.18 -66.77 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.06 Total: 13.40 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 6.54 Total: -3.79 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -4.06 Total: -99.66 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.32 Total: 0.15 kcal Total: -70.95 4.18 -66.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887676174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.001 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds