Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20296 * 2 1 4 4 C 1.38425 * 114.92123 * 179.97438 * 3 2 1 5 5 C 1.33383 * 114.92174 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.20368 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47328 * 89.99412 * 6 5 4 8 8 C 1.34782 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.47425 * 119.99907 * 179.97438 * 8 7 6 11 11 C 1.41297 * 126.41726 * 359.69341 * 10 8 7 12 12 N 1.30447 * 108.02365 * 179.87919 * 11 10 8 13 13 N 1.39928 * 108.89811 * 0.38092 * 12 11 10 14 14 C 1.46495 * 125.75729 * 179.77837 * 13 12 11 15 15 C 1.50700 * 109.47158 * 269.97294 * 14 13 12 16 16 H 1.08000 * 119.99694 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00608 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99380 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00482 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47150 * 89.99924 * 19 17 15 21 21 H 1.48494 * 109.47271 * 210.00350 * 19 17 15 22 22 H 1.48502 * 109.46632 * 330.00434 * 19 17 15 23 23 C 1.34266 * 108.49223 * 359.75155 * 13 12 11 24 24 C 1.50697 * 126.28935 * 179.97438 * 23 13 12 25 25 S 1.75887 * 109.59638 * 359.97438 * 5 4 3 26 26 H 1.09007 * 109.47039 * 90.00840 * 1 2 3 27 27 H 1.08998 * 109.47062 * 210.00206 * 1 2 3 28 28 H 1.08994 * 109.47215 * 330.00270 * 1 2 3 29 29 H 1.07997 * 122.53530 * 0.23800 * 3 2 1 30 30 H 1.08001 * 122.53506 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.47162 * 209.99957 * 6 5 4 32 32 H 1.09004 * 109.46782 * 329.99301 * 6 5 4 33 33 H 0.97004 * 119.99962 * 0.02562 * 7 6 5 34 34 H 1.08006 * 125.98362 * 359.97438 * 11 10 8 35 35 H 1.09001 * 109.47141 * 29.96977 * 14 13 12 36 36 H 1.09003 * 109.47731 * 149.97607 * 14 13 12 37 37 H 0.96998 * 119.99711 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47384 * 270.00427 * 24 23 13 39 39 H 1.08994 * 109.47446 * 30.00863 * 24 23 13 40 40 H 1.09005 * 109.46734 * 150.00268 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4476 0.0016 6 6 5.3861 -0.9770 0.0018 7 7 5.8436 -1.1473 1.3830 8 6 7.0842 -1.6130 1.6294 9 8 7.8237 -1.8914 0.7052 10 6 7.5448 -1.7838 3.0194 11 6 6.8056 -1.4977 4.1892 12 7 7.5539 -1.7824 5.2191 13 7 8.7923 -2.2489 4.7645 14 6 9.9121 -2.6685 5.6107 15 6 10.7966 -1.4826 5.8979 16 1 10.5490 -0.5133 5.4911 17 6 11.9213 -1.6348 6.6808 18 7 12.2224 -2.8152 7.1765 19 14 13.0172 -0.1647 7.0374 20 1 12.5510 0.5117 8.2745 21 1 14.4171 -0.6241 7.2219 22 1 12.9543 0.7870 5.8992 23 6 8.7810 -2.2477 3.4219 24 6 9.9107 -2.6738 2.5201 25 16 2.5210 -1.4372 0.0026 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8668 2.0894 0.0038 30 1 4.3720 1.6351 0.0002 31 1 5.4136 -1.9383 -0.5113 32 1 6.0387 -0.2717 -0.5129 33 1 5.2534 -0.9255 2.1202 34 1 5.7972 -1.1125 4.2243 35 1 9.5282 -3.0709 6.5481 36 1 10.4896 -3.4359 5.0952 37 1 13.0138 -2.9224 7.7270 38 1 10.5443 -1.8145 2.3005 39 1 10.5016 -3.4434 3.0166 40 1 9.5033 -3.0718 1.5907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888258724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = 35.475011 kcal Electronic energy + Delta-G solvation = -22973.115118 eV Core-core repulsion = 19493.801664 eV Total energy + Delta-G solvation = -3479.313454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31864 -40.22517 -38.91137 -35.99572 -35.77359 -33.88979 -32.98495 -32.62773 -30.00495 -28.80133 -28.00559 -25.67824 -25.05910 -23.72731 -23.16737 -21.28988 -20.70308 -19.78057 -18.86817 -18.59450 -17.76478 -16.94322 -16.79730 -16.48243 -16.19500 -15.92596 -15.62996 -15.30951 -14.80401 -14.53826 -14.41668 -14.11027 -14.07091 -13.98237 -13.70079 -13.59741 -13.46234 -13.08926 -12.98563 -12.93416 -12.79343 -12.70540 -12.37337 -12.31365 -11.85879 -11.74201 -11.61619 -10.89366 -10.76469 -10.27356 -10.15728 -9.47045 -9.45570 -9.39627 -8.38160 -6.54442 -0.05240 0.63926 0.67334 1.05916 1.31428 1.37299 1.38599 1.48695 1.62790 1.77831 2.32083 2.50298 2.53357 2.94057 3.63193 3.74160 3.77865 4.00249 4.12009 4.22468 4.27803 4.42939 4.50254 4.60776 4.66260 4.72860 4.77113 4.80140 4.83317 4.89866 5.06834 5.13365 5.16833 5.26328 5.33340 5.42751 5.49170 5.61399 5.66206 5.74512 6.04089 6.54411 6.58310 6.83674 7.16509 7.31835 8.69785 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026189 B = 0.002349 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.911770 B =11918.364287 C =12101.185412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.172 4.172 3 C -0.155 4.155 4 C -0.106 4.106 5 C -0.217 4.217 6 C 0.202 3.798 7 N -0.713 5.713 8 C 0.607 3.393 9 O -0.581 6.581 10 C -0.331 4.331 11 C 0.079 3.921 12 N -0.336 5.336 13 N -0.338 5.338 14 C 0.267 3.733 15 C -0.555 4.555 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.916 5.916 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.146 3.854 24 C -0.086 4.086 25 S 0.098 5.902 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.223 0.777 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.274 0.726 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.894 5.997 -15.636 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.290 4.290 3 C -0.184 4.184 4 C -0.138 4.138 5 C -0.335 4.335 6 C 0.077 3.923 7 N -0.365 5.365 8 C 0.397 3.603 9 O -0.462 6.462 10 C -0.346 4.346 11 C -0.107 4.107 12 N -0.155 5.155 13 N -0.115 5.115 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.194 1.194 23 C 0.010 3.990 24 C -0.144 4.144 25 S 0.363 5.637 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.239 0.761 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.354 4.047 -14.775 26.280 hybrid contribution 0.823 2.013 0.084 2.177 sum -20.530 6.060 -14.691 25.962 Atomic orbital electron populations 1.20476 0.86046 1.04170 1.03748 1.24979 1.01262 0.95270 1.07448 1.20322 0.92469 1.00350 1.05304 1.20407 0.97127 0.95826 1.00485 1.24267 0.97672 0.97136 1.14400 1.19515 0.88582 1.01031 0.83179 1.45676 1.14595 1.67356 1.08915 1.17094 0.81234 0.75479 0.86510 1.90684 1.55889 1.53408 1.46268 1.19921 0.96513 1.23850 0.94314 1.24458 1.00506 0.97546 0.88229 1.77091 0.92296 1.20972 1.25187 1.49109 1.11794 1.45883 1.04686 1.19378 0.80321 0.96027 0.89468 1.21383 1.09280 0.94950 1.33677 0.93018 1.25741 0.98411 0.99314 0.94380 1.69997 1.27549 1.24122 1.33770 0.85339 0.77792 0.78563 0.78733 1.19794 1.19596 1.19426 1.21976 0.96989 0.94992 0.85025 1.20554 0.93868 1.02192 0.97776 1.84462 0.96343 1.09829 1.73104 0.89613 0.90842 0.89051 0.82365 0.83148 0.91132 0.89760 0.75332 0.76062 0.95047 0.93099 0.91653 0.89847 0.91029 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.38 71.24 0.74 0.06 16 2 C -0.17 -2.27 6.51 24.59 0.16 -2.11 16 3 C -0.16 -2.03 10.05 21.22 0.21 -1.82 16 4 C -0.11 -1.61 10.05 21.22 0.21 -1.39 16 5 C -0.22 -3.73 5.88 24.59 0.14 -3.59 16 6 C 0.20 4.14 6.16 85.63 0.53 4.66 16 7 N -0.71 -16.64 5.54 -470.12 -2.60 -19.25 16 8 C 0.61 19.46 7.81 86.66 0.68 20.13 16 9 O -0.58 -21.63 14.84 -4.02 -0.06 -21.69 16 10 C -0.33 -11.89 6.13 -20.15 -0.12 -12.01 16 11 C 0.08 2.67 11.50 85.65 0.99 3.66 16 12 N -0.34 -14.56 12.50 -56.27 -0.70 -15.27 16 13 N -0.34 -15.72 3.56 -336.71 -1.20 -16.92 16 14 C 0.27 13.86 5.97 85.63 0.51 14.37 16 15 C -0.55 -30.70 9.39 25.60 0.24 -30.46 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.02 1.24 5.46 84.65 0.46 1.70 16 18 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 19 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.15 6.05 7.01 42.14 0.30 6.35 16 24 C -0.09 -3.18 9.57 71.23 0.68 -2.50 16 25 S 0.10 1.56 23.31 -56.49 -1.32 0.25 16 26 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.41 7.82 7.42 -92.71 -0.69 7.14 16 34 H 0.22 4.94 7.50 -2.91 -0.02 4.92 16 35 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.65 7.02 -2.39 -0.02 2.63 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.07 2.62 7.05 -2.39 -0.02 2.60 16 40 H 0.10 3.57 6.50 -2.38 -0.02 3.56 16 Total: -1.00 -67.18 360.48 2.54 -64.64 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.39 Total: 17.49 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.73 Total: -2.93 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.22 Total: -102.56 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.32 Total: 0.25 kcal Total: -67.18 2.54 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888258724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.114 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds