Wall clock time and date at job start Tue Mar 31 2020 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20424 * 2 1 4 4 C 1.38418 * 114.91951 * 179.78869 * 3 2 1 5 5 C 1.50706 * 122.53840 * 180.26936 * 4 3 2 6 6 C 1.33383 * 114.92392 * 0.43570 * 4 3 2 7 7 C 1.50702 * 125.20625 * 179.85783 * 6 4 3 8 8 C 1.50704 * 109.47115 * 89.71320 * 7 6 4 9 9 O 1.21297 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.40151 * 120.00099 * 180.02562 * 10 8 7 12 12 C 1.40416 * 125.97476 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86796 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85941 * 0.26441 * 13 12 11 15 15 C 1.46504 * 125.96940 * 179.73198 * 14 13 12 16 16 C 1.50699 * 109.46610 * 125.00265 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00163 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99479 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00617 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46957 * 89.99628 * 20 18 16 22 22 H 1.48496 * 109.47204 * 210.00002 * 20 18 16 23 23 H 1.48503 * 109.46812 * 329.99875 * 20 18 16 24 24 N 1.31213 * 125.97528 * 180.02562 * 11 10 8 25 25 S 1.75883 * 125.20178 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47255 * 299.99729 * 1 2 3 28 28 H 1.08993 * 109.47002 * 60.00132 * 1 2 3 29 29 H 1.08003 * 122.53470 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47024 * 270.17568 * 5 4 3 31 31 H 1.09001 * 109.46720 * 30.17818 * 5 4 3 32 32 H 1.08998 * 109.46780 * 150.16867 * 5 4 3 33 33 H 1.08999 * 109.46960 * 329.71476 * 7 6 4 34 34 H 1.08996 * 109.47368 * 209.71580 * 7 6 4 35 35 H 0.96994 * 119.99525 * 0.02562 * 10 8 7 36 36 H 1.08000 * 126.06023 * 359.97438 * 12 11 10 37 37 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46990 * 244.99353 * 15 14 13 39 39 H 1.08992 * 109.47218 * 5.00271 * 15 14 13 40 40 H 0.97001 * 119.99807 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 4.6623 1.9481 0.0113 6 6 3.9751 -0.4477 -0.0008 7 6 5.3861 -0.9771 -0.0005 8 6 5.8561 -1.1537 1.4204 9 8 5.1177 -0.8772 2.3422 10 7 7.0969 -1.6187 1.6670 11 6 7.5338 -1.7833 2.9884 12 6 6.7873 -1.5051 4.1447 13 6 7.5591 -1.7954 5.2167 14 7 8.7512 -2.2351 4.7615 15 6 9.8866 -2.6532 5.5876 16 6 10.3044 -4.0478 5.1982 17 1 9.7767 -4.5705 4.4142 18 6 11.3603 -4.6564 5.8429 19 7 12.0032 -4.0196 6.7973 20 14 11.8778 -6.3854 5.3608 21 1 12.8986 -6.3145 4.2847 22 1 12.4513 -7.0780 6.5425 23 1 10.6946 -7.1379 4.8719 24 7 8.7119 -2.2245 3.3614 25 16 2.5209 -1.4372 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8669 2.0894 0.0004 30 1 4.9109 2.2193 -1.0147 31 1 4.2557 2.8172 0.5286 32 1 5.5612 1.6073 0.5252 33 1 6.0390 -0.2714 -0.5142 34 1 5.4138 -1.9379 -0.5144 35 1 7.6874 -1.8393 0.9298 36 1 5.7763 -1.1264 4.1729 37 1 7.2738 -1.6894 6.2529 38 1 10.7200 -1.9679 5.4332 39 1 9.5957 -2.6409 6.6379 40 1 12.7464 -4.4476 7.2506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889045784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:02 Heat of formation + Delta-G solvation = 68.942731 kcal Electronic energy + Delta-G solvation = -23034.331733 eV Core-core repulsion = 19556.469548 eV Total energy + Delta-G solvation = -3477.862184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70472 -39.52639 -38.32507 -34.74518 -33.65011 -33.32436 -31.27572 -30.30730 -29.30805 -28.47596 -26.74970 -25.20292 -23.05625 -21.86471 -21.54953 -20.28413 -19.55654 -18.42043 -17.34808 -16.93948 -16.60788 -16.47168 -15.38001 -15.35136 -14.90794 -14.52820 -14.28164 -14.03474 -13.79859 -13.44838 -13.35639 -13.31756 -12.86348 -12.73378 -12.49272 -12.31366 -12.21216 -11.79515 -11.74512 -11.65354 -11.51579 -11.04171 -10.89553 -10.79635 -10.42706 -10.26436 -10.01488 -9.59988 -9.49870 -8.64101 -8.58790 -8.36475 -8.13339 -7.47204 -6.25050 -4.30107 0.81622 1.48157 1.86307 2.32615 2.48282 2.87007 2.94129 3.23270 3.28999 3.34292 3.71808 3.90836 4.31669 4.39715 4.58372 4.78444 4.86956 4.98208 5.10092 5.13534 5.20973 5.23942 5.31742 5.43660 5.47612 5.56463 5.60292 5.80537 5.81396 5.99683 6.25959 6.27366 6.42619 6.49411 6.61535 6.85728 7.04605 7.40569 7.57194 7.70525 7.88339 8.04044 8.25692 8.63080 8.79573 9.35498 10.83678 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002346 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.419153 B =11929.845038 C =12167.051933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.179 4.179 3 C -0.136 4.136 4 C -0.086 4.086 5 C -0.096 4.096 6 C -0.167 4.167 7 C -0.065 4.065 8 C 0.517 3.483 9 O -0.503 6.503 10 N -0.632 5.632 11 C 0.257 3.743 12 C -0.287 4.287 13 C 0.051 3.949 14 N -0.319 5.319 15 C 0.258 3.742 16 C -0.528 4.528 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.305 5.305 25 S 0.109 5.891 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.411 0.589 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.884 9.941 -15.707 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.296 4.296 3 C -0.167 4.167 4 C -0.099 4.099 5 C -0.155 4.155 6 C -0.285 4.285 7 C -0.107 4.107 8 C 0.302 3.698 9 O -0.376 6.376 10 N -0.280 5.280 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.099 4.099 14 N -0.101 5.101 15 C 0.141 3.859 16 C -0.567 4.567 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.136 5.136 25 S 0.376 5.624 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.349 8.076 -15.217 25.169 hybrid contribution 0.297 0.668 -0.128 0.742 sum -18.052 8.744 -15.345 25.255 Atomic orbital electron populations 1.20315 0.87942 1.02824 1.02856 1.24416 0.99816 0.95896 1.09504 1.19841 0.92256 0.99195 1.05386 1.18712 0.94784 0.93954 1.02407 1.20527 0.97056 0.95964 1.01914 1.23422 0.96961 0.96012 1.12063 1.20074 0.92204 1.03906 0.94474 1.20466 0.80680 0.77276 0.91408 1.90674 1.53809 1.47696 1.45375 1.42470 1.15399 1.64849 1.05296 1.19105 0.93570 1.01931 0.84995 1.21520 1.03412 1.17752 0.89145 1.22564 0.87106 1.00280 0.99960 1.49085 1.12433 1.46064 1.02501 1.19747 0.81151 0.96708 0.88320 1.21252 1.16181 0.98683 1.20535 0.91322 1.24953 0.95696 0.98814 0.94666 1.69922 1.21781 1.38035 1.23611 0.86318 0.78888 0.83190 0.78051 1.20327 1.20975 1.19729 1.77322 1.17677 1.26107 0.92460 1.84189 0.96079 1.09068 1.73062 0.91535 0.90569 0.90683 0.84555 0.91258 0.91371 0.91578 0.86734 0.87542 0.75425 0.82341 0.81517 0.93711 0.92537 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.01 0.37 -0.18 16 2 C -0.18 -1.76 6.51 -36.00 -0.23 -1.99 16 3 C -0.14 -1.36 9.85 -41.21 -0.41 -1.77 16 4 C -0.09 -0.92 5.80 -106.25 -0.62 -1.54 16 5 C -0.10 -0.84 9.60 36.01 0.35 -0.50 16 6 C -0.17 -1.85 5.00 -36.00 -0.18 -2.03 16 7 C -0.06 -0.62 5.56 -29.03 -0.16 -0.78 16 8 C 0.52 7.24 7.79 -10.98 -0.09 7.16 16 9 O -0.50 -8.81 13.17 5.54 0.07 -8.73 16 10 N -0.63 -9.51 5.45 -11.13 -0.06 -9.57 16 11 C 0.26 5.14 8.11 -154.40 -1.25 3.89 16 12 C -0.29 -5.75 9.61 -39.83 -0.38 -6.13 16 13 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 14 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 15 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 16 C -0.53 -14.72 9.23 -34.44 -0.32 -15.03 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 20 Si 0.91 21.38 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 N -0.30 -7.00 12.42 31.44 0.39 -6.61 16 25 S 0.11 1.18 23.31 -107.50 -2.51 -1.32 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.07 0.64 7.26 -51.93 -0.38 0.26 16 33 H 0.11 0.81 7.33 -51.93 -0.38 0.42 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 4.87 8.82 -40.82 -0.36 4.51 16 36 H 0.16 3.12 5.91 -52.49 -0.31 2.80 16 37 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -33.49 359.36 -9.64 -43.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.20 Total: 3.55 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.24 Total: -9.93 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.84 Total: -48.47 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.49 -9.64 -43.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889045784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.073 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds