Wall clock time and date at job start Tue Mar 31 2020 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20424 * 2 1 4 4 C 1.38418 * 114.91951 * 179.78869 * 3 2 1 5 5 C 1.50706 * 122.53840 * 180.26936 * 4 3 2 6 6 C 1.33383 * 114.92392 * 0.43570 * 4 3 2 7 7 C 1.50702 * 125.20625 * 179.85783 * 6 4 3 8 8 C 1.50704 * 109.47115 * 89.71320 * 7 6 4 9 9 O 1.21297 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.40151 * 120.00099 * 180.02562 * 10 8 7 12 12 C 1.40416 * 125.97476 * 0.02562 * 11 10 8 13 13 C 1.35237 * 107.86796 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85941 * 0.26441 * 13 12 11 15 15 C 1.46504 * 125.96940 * 179.73198 * 14 13 12 16 16 C 1.50699 * 109.46610 * 125.00265 * 15 14 13 17 17 H 1.08001 * 120.00250 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00163 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99479 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00617 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46957 * 89.99628 * 20 18 16 22 22 H 1.48496 * 109.47204 * 210.00002 * 20 18 16 23 23 H 1.48503 * 109.46812 * 329.99875 * 20 18 16 24 24 N 1.31213 * 125.97528 * 180.02562 * 11 10 8 25 25 S 1.75883 * 125.20178 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47255 * 299.99729 * 1 2 3 28 28 H 1.08993 * 109.47002 * 60.00132 * 1 2 3 29 29 H 1.08003 * 122.53470 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47024 * 270.17568 * 5 4 3 31 31 H 1.09001 * 109.46720 * 30.17818 * 5 4 3 32 32 H 1.08998 * 109.46780 * 150.16867 * 5 4 3 33 33 H 1.08999 * 109.46960 * 329.71476 * 7 6 4 34 34 H 1.08996 * 109.47368 * 209.71580 * 7 6 4 35 35 H 0.96994 * 119.99525 * 0.02562 * 10 8 7 36 36 H 1.08000 * 126.06023 * 359.97438 * 12 11 10 37 37 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46990 * 244.99353 * 15 14 13 39 39 H 1.08992 * 109.47218 * 5.00271 * 15 14 13 40 40 H 0.97001 * 119.99807 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 4.6623 1.9481 0.0113 6 6 3.9751 -0.4477 -0.0008 7 6 5.3861 -0.9771 -0.0005 8 6 5.8561 -1.1537 1.4204 9 8 5.1177 -0.8772 2.3422 10 7 7.0969 -1.6187 1.6670 11 6 7.5338 -1.7833 2.9884 12 6 6.7873 -1.5051 4.1447 13 6 7.5591 -1.7954 5.2167 14 7 8.7512 -2.2351 4.7615 15 6 9.8866 -2.6532 5.5876 16 6 10.3044 -4.0478 5.1982 17 1 9.7767 -4.5705 4.4142 18 6 11.3603 -4.6564 5.8429 19 7 12.0032 -4.0196 6.7973 20 14 11.8778 -6.3854 5.3608 21 1 12.8986 -6.3145 4.2847 22 1 12.4513 -7.0780 6.5425 23 1 10.6946 -7.1379 4.8719 24 7 8.7119 -2.2245 3.3614 25 16 2.5209 -1.4372 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8669 2.0894 0.0004 30 1 4.9109 2.2193 -1.0147 31 1 4.2557 2.8172 0.5286 32 1 5.5612 1.6073 0.5252 33 1 6.0390 -0.2714 -0.5142 34 1 5.4138 -1.9379 -0.5144 35 1 7.6874 -1.8393 0.9298 36 1 5.7763 -1.1264 4.1729 37 1 7.2738 -1.6894 6.2529 38 1 10.7200 -1.9679 5.4332 39 1 9.5957 -2.6409 6.6379 40 1 12.7464 -4.4476 7.2506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889045784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:02 Heat of formation + Delta-G solvation = 49.655336 kcal Electronic energy + Delta-G solvation = -23035.168097 eV Core-core repulsion = 19556.469548 eV Total energy + Delta-G solvation = -3478.698549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22033 -40.74508 -39.18012 -36.22297 -35.26830 -34.37279 -32.87409 -31.33682 -30.92525 -29.12583 -28.57265 -26.19574 -24.84184 -22.99961 -22.45624 -21.86630 -20.95926 -19.23360 -18.69366 -18.36733 -17.98306 -17.89646 -16.99182 -16.55731 -16.17210 -15.71624 -15.60559 -15.35941 -14.77921 -14.46431 -14.38678 -14.15894 -14.03535 -13.93127 -13.82661 -13.66387 -13.51717 -13.10756 -12.92856 -12.73900 -12.47165 -12.33634 -12.29992 -12.20530 -12.04904 -11.62157 -11.56102 -11.39222 -10.90322 -10.72819 -9.76353 -9.35850 -9.14720 -9.12591 -8.33850 -6.47991 0.03795 0.72905 0.94785 1.10180 1.35982 1.38056 1.39386 1.46532 1.50904 1.81208 2.23205 2.31338 2.46847 2.97854 3.54768 3.78719 3.93247 4.04761 4.17203 4.26706 4.36528 4.49603 4.56168 4.62739 4.74866 4.76140 4.80835 4.86149 4.89392 4.92139 5.02066 5.05418 5.16036 5.17358 5.29665 5.52980 5.55799 5.70477 5.79059 5.93225 6.24150 6.30282 6.63865 7.00748 7.14338 7.21935 8.73813 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002346 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.419153 B =11929.845038 C =12167.051933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.178 4.178 3 C -0.151 4.151 4 C -0.093 4.093 5 C -0.095 4.095 6 C -0.187 4.187 7 C -0.055 4.055 8 C 0.519 3.481 9 O -0.538 6.538 10 N -0.625 5.625 11 C 0.267 3.733 12 C -0.294 4.294 13 C 0.055 3.945 14 N -0.344 5.344 15 C 0.272 3.728 16 C -0.547 4.547 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.920 5.920 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.273 1.273 24 N -0.345 5.345 25 S 0.077 5.923 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.426 0.574 36 H 0.165 0.835 37 H 0.199 0.801 38 H 0.022 0.978 39 H 0.058 0.942 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 10.112 -17.087 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.295 4.295 3 C -0.181 4.181 4 C -0.105 4.105 5 C -0.154 4.154 6 C -0.304 4.304 7 C -0.096 4.096 8 C 0.307 3.693 9 O -0.413 6.413 10 N -0.275 5.275 11 C 0.012 3.988 12 C -0.325 4.325 13 C -0.094 4.094 14 N -0.126 5.126 15 C 0.154 3.846 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.198 1.198 24 N -0.176 5.176 25 S 0.344 5.656 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.172 0.828 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.264 0.736 36 H 0.182 0.818 37 H 0.216 0.784 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.328 8.261 -16.629 26.801 hybrid contribution 0.452 0.725 0.257 0.892 sum -18.876 8.986 -16.372 26.553 Atomic orbital electron populations 1.20428 0.86053 1.03478 1.04051 1.24813 1.01110 0.95105 1.08489 1.20125 0.92203 1.00148 1.05591 1.19068 0.95598 0.94361 1.01478 1.20569 0.96114 0.95481 1.03187 1.23596 0.97260 0.96206 1.13321 1.20153 0.91972 1.06089 0.91386 1.21328 0.79541 0.75535 0.92943 1.90650 1.54583 1.49023 1.46998 1.42645 1.16226 1.64813 1.03847 1.19467 0.92525 0.99675 0.87134 1.21691 1.03579 1.17947 0.89291 1.23150 0.85885 0.98654 1.01713 1.48845 1.12880 1.48098 1.02813 1.19337 0.81426 0.95203 0.88656 1.21387 1.16768 0.99855 1.20506 0.92982 1.25756 0.95437 1.02634 0.94457 1.69999 1.22115 1.39599 1.24194 0.85335 0.78407 0.78451 0.78150 1.19691 1.19688 1.19782 1.77245 1.19467 1.28357 0.92498 1.84245 0.97195 1.10463 1.73715 0.91197 0.89792 0.88899 0.82758 0.89143 0.90915 0.92542 0.83647 0.85102 0.73606 0.81806 0.78400 0.96000 0.92462 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.38 71.24 0.74 -0.23 16 2 C -0.18 -3.24 6.51 24.59 0.16 -3.08 16 3 C -0.15 -2.75 9.85 21.21 0.21 -2.54 16 4 C -0.09 -1.82 5.80 -20.92 -0.12 -1.94 16 5 C -0.09 -1.47 9.60 71.24 0.68 -0.78 16 6 C -0.19 -3.85 5.00 24.59 0.12 -3.73 16 7 C -0.05 -0.93 5.56 29.10 0.16 -0.77 16 8 C 0.52 13.85 7.79 87.66 0.68 14.54 16 9 O -0.54 -18.46 13.17 -3.08 -0.04 -18.50 16 10 N -0.62 -18.13 5.45 -307.50 -1.68 -19.81 16 11 C 0.27 10.60 8.11 133.33 1.08 11.68 16 12 C -0.29 -11.68 9.61 22.11 0.21 -11.47 16 13 C 0.05 2.19 11.44 83.52 0.96 3.15 16 14 N -0.34 -16.36 3.67 -351.85 -1.29 -17.65 16 15 C 0.27 14.26 6.26 85.63 0.54 14.79 16 16 C -0.55 -31.03 9.23 25.60 0.24 -30.79 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.02 0.97 5.46 84.65 0.46 1.43 16 19 N -0.92 -52.29 13.29 21.45 0.28 -52.01 16 20 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 N -0.34 -16.05 12.42 -54.45 -0.68 -16.72 16 25 S 0.08 1.61 23.31 -56.49 -1.32 0.30 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.06 0.98 7.26 -2.39 -0.02 0.97 16 33 H 0.15 1.59 7.33 -2.39 -0.02 1.57 16 34 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.43 9.49 8.82 -92.71 -0.82 8.67 16 36 H 0.16 6.37 5.91 -2.91 -0.02 6.36 16 37 H 0.20 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.76 359.36 3.69 -69.07 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.26 Total: 19.33 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 6.12 Total: -9.74 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -3.36 Total: -106.19 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.30 kcal Total: -72.76 3.69 -69.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889045784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.730 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds