Wall clock time and date at job start Tue Mar 31 2020 12:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33390 * 122.54163 * 2 1 4 4 S 1.75878 * 109.59433 * 180.02562 * 3 2 1 5 5 C 1.75888 * 90.97137 * 359.83095 * 4 3 2 6 6 C 1.33387 * 109.59118 * 0.30298 * 5 4 3 7 7 C 1.50706 * 122.53576 * 179.90534 * 6 5 4 8 8 N 1.46500 * 109.46979 * 259.70534 * 7 6 5 9 9 C 1.34773 * 119.99969 * 180.02562 * 8 7 6 10 10 O 1.21603 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.47428 * 119.99919 * 180.02562 * 9 8 7 12 12 C 1.41290 * 126.41584 * 359.97139 * 11 9 8 13 13 N 1.30448 * 108.01917 * 180.02562 * 12 11 9 14 14 N 1.39930 * 108.90321 * 359.97438 * 13 12 11 15 15 C 1.46494 * 125.75844 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47034 * 269.97714 * 15 14 13 17 17 H 1.08000 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00281 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00059 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00448 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47048 * 59.99759 * 20 18 16 22 22 H 1.48499 * 109.47441 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46695 * 299.99858 * 20 18 16 24 24 C 1.34259 * 108.48819 * 0.02562 * 14 13 12 25 25 C 1.50706 * 126.29027 * 180.26402 * 24 14 13 26 26 H 1.09000 * 109.47299 * 269.97586 * 1 2 3 27 27 H 1.08998 * 109.46823 * 29.97652 * 1 2 3 28 28 H 1.08999 * 109.46781 * 149.97084 * 1 2 3 29 29 H 1.08002 * 125.19810 * 0.05719 * 3 2 1 30 30 H 1.07995 * 125.20466 * 180.17620 * 5 4 3 31 31 H 1.09000 * 109.46542 * 139.70567 * 7 6 5 32 32 H 1.08993 * 109.47195 * 19.70760 * 7 6 5 33 33 H 0.97000 * 119.99884 * 359.97438 * 8 7 6 34 34 H 1.07998 * 125.98994 * 0.02562 * 12 11 9 35 35 H 1.09003 * 109.46965 * 29.96946 * 15 14 13 36 36 H 1.09000 * 109.47680 * 149.97705 * 15 14 13 37 37 H 0.96997 * 120.00149 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47029 * 269.71218 * 25 24 14 39 39 H 1.09001 * 109.47030 * 29.71159 * 25 24 14 40 40 H 1.09002 * 109.47083 * 149.71451 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1245 0.0000 4 16 3.9386 0.7304 -0.0007 5 6 3.5737 -0.9902 0.0042 6 6 2.2516 -1.1670 -0.0006 7 6 1.6166 -2.5337 -0.0003 8 7 1.1923 -2.8754 -1.3602 9 6 0.5946 -4.0588 -1.6023 10 8 0.4078 -4.8431 -0.6920 11 6 0.1681 -4.4029 -2.9710 12 6 0.3174 -3.5988 -4.1231 13 7 -0.1831 -4.2494 -5.1369 14 7 -0.6687 -5.4829 -4.6889 15 6 -1.3062 -6.5056 -5.5218 16 6 -2.7937 -6.2672 -5.5596 17 1 -3.2215 -5.4371 -5.0172 18 6 -3.6085 -7.1087 -6.2868 19 7 -3.0876 -8.1194 -6.9479 20 14 -5.4525 -6.8136 -6.3332 21 1 -5.7246 -5.4698 -6.9034 22 1 -6.0986 -7.8496 -7.1786 23 1 -6.0002 -6.8866 -4.9548 24 6 -0.4520 -5.5709 -3.3668 25 6 -0.8132 -6.7341 -2.4792 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 1.8154 2.1240 0.0009 30 1 4.3077 -1.7823 0.0082 31 1 0.7500 -2.5314 0.6610 32 1 2.3394 -3.2701 0.3506 33 1 1.3409 -2.2495 -2.0863 34 1 0.7670 -2.6174 -4.1583 35 1 -0.9039 -6.4528 -6.5335 36 1 -1.1069 -7.4918 -5.1025 37 1 -3.6608 -8.7112 -7.4597 38 1 -1.8180 -6.5900 -2.0823 39 1 -0.7802 -7.6570 -3.0584 40 1 -0.1025 -6.7967 -1.6551 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890274742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:38 Heat of formation + Delta-G solvation = 55.644551 kcal Electronic energy + Delta-G solvation = -23422.741516 eV Core-core repulsion = 19944.302679 eV Total energy + Delta-G solvation = -3478.438837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78178 -39.51344 -38.23066 -34.34637 -33.83924 -32.09577 -31.44835 -31.05548 -28.86050 -27.34930 -26.67731 -25.61308 -23.41981 -22.56425 -21.83523 -19.85164 -19.20721 -18.28433 -17.92907 -17.00077 -16.74183 -15.78983 -15.35730 -15.12835 -14.80592 -14.45763 -14.20788 -14.10859 -13.79335 -13.40326 -13.21656 -13.07429 -12.63189 -12.59307 -12.40314 -12.26307 -12.09383 -11.98772 -11.82213 -11.74263 -11.46296 -11.13149 -11.04915 -10.86824 -10.37033 -10.18350 -9.95084 -9.49288 -9.01138 -8.95311 -8.70388 -8.59214 -8.57830 -7.90017 -6.33201 -4.41128 0.68109 1.36183 1.68123 2.20196 2.22522 2.80914 3.20214 3.23670 3.24222 3.32412 3.73534 3.93443 4.24559 4.55629 4.58982 4.95190 5.00973 5.12056 5.12979 5.24196 5.27472 5.30989 5.43495 5.51460 5.67594 5.71608 5.78523 5.87760 5.95991 6.13991 6.18323 6.24140 6.42610 6.54929 6.62549 6.80947 6.91304 7.16981 7.56328 7.75371 7.77675 7.80534 8.38895 8.61384 8.64735 9.25697 10.74988 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.002504 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.332497 B =11179.088160 C =11384.646615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.087 4.087 3 C -0.220 4.220 4 S 0.095 5.905 5 C -0.189 4.189 6 C -0.118 4.118 7 C 0.186 3.814 8 N -0.730 5.730 9 C 0.604 3.396 10 O -0.556 6.556 11 C -0.332 4.332 12 C 0.058 3.942 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.165 3.835 25 C -0.093 4.093 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.399 0.601 34 H 0.174 0.826 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.270 0.730 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.798 15.224 14.113 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.355 4.355 4 S 0.360 5.640 5 C -0.326 4.326 6 C -0.131 4.131 7 C 0.060 3.940 8 N -0.383 5.383 9 C 0.395 3.605 10 O -0.436 6.436 11 C -0.348 4.348 12 C -0.129 4.129 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.028 3.972 25 C -0.151 4.151 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.191 0.809 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.693 15.293 13.238 23.880 hybrid contribution -1.941 -0.199 0.269 1.970 sum 10.752 15.094 13.507 22.932 Atomic orbital electron populations 1.20605 0.89415 1.03404 1.02609 1.18854 0.97673 0.91352 1.02032 1.25420 0.95669 1.02364 1.12059 1.84296 1.06513 1.00292 1.72882 1.25597 0.99130 0.99337 1.08498 1.18889 0.92710 0.95870 1.05609 1.19760 0.98905 0.90490 0.84867 1.45758 1.63108 1.19609 1.09807 1.17309 0.75706 0.80289 0.87219 1.90695 1.57181 1.49636 1.46041 1.19657 1.22027 0.98948 0.94162 1.23713 0.99653 0.99462 0.90099 1.77138 1.17205 0.93751 1.23477 1.49365 1.40435 1.13560 1.05731 1.19844 0.92971 0.83125 0.90641 1.21210 0.90222 1.14069 1.32373 0.91714 1.24922 0.99759 0.94502 0.94452 1.69904 1.36401 1.15731 1.30701 0.86380 0.83552 0.78192 0.78397 1.19906 1.20869 1.19832 1.21478 0.93683 0.96199 0.85827 1.20569 1.03300 0.93301 0.97894 0.91046 0.91425 0.90645 0.81871 0.81531 0.90569 0.90892 0.76692 0.80862 0.92533 0.92556 0.92053 0.89844 0.90899 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.60 36.01 0.35 -0.47 16 2 C -0.09 -0.76 5.80 -106.25 -0.62 -1.38 16 3 C -0.22 -1.73 10.98 29.04 0.32 -1.41 16 4 S 0.09 0.72 23.34 -107.50 -2.51 -1.79 16 5 C -0.19 -1.57 10.95 29.04 0.32 -1.25 16 6 C -0.12 -1.08 5.17 -106.25 -0.55 -1.63 16 7 C 0.19 1.98 5.12 -5.19 -0.03 1.95 16 8 N -0.73 -8.90 5.27 -62.56 -0.33 -9.23 16 9 C 0.60 9.85 7.81 -12.52 -0.10 9.75 16 10 O -0.56 -10.41 14.84 5.28 0.08 -10.33 16 11 C -0.33 -6.04 6.13 -105.07 -0.64 -6.68 16 12 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 13 N -0.30 -6.37 12.50 30.86 0.39 -5.98 16 14 N -0.31 -7.10 3.56 -57.77 -0.21 -7.31 16 15 C 0.25 6.26 5.97 -5.20 -0.03 6.23 16 16 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 17 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 20 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.17 3.36 7.01 -81.60 -0.57 2.79 16 25 C -0.09 -1.67 9.56 36.01 0.34 -1.33 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 29 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 32 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.40 4.21 7.42 -40.82 -0.30 3.91 16 34 H 0.17 2.20 7.50 -52.49 -0.39 1.81 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 40 H 0.09 1.61 6.51 -51.93 -0.34 1.27 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -30.62 357.26 -8.34 -38.96 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.03 Total: 4.19 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.83 Total: -5.79 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.59 Total: -46.39 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.62 -8.34 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890274742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.608 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds