Wall clock time and date at job start Tue Mar 31 2020 12:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29195 * 2 1 4 4 C 1.47423 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00723 * 0.31924 * 4 3 2 6 6 N 1.34787 * 119.99567 * 180.31502 * 4 3 2 7 7 C 1.46498 * 119.99847 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47138 * 325.00207 * 7 6 4 9 9 C 1.52993 * 109.47541 * 84.99787 * 7 6 4 10 10 C 1.50697 * 109.46950 * 205.00241 * 7 6 4 11 11 C 1.38429 * 122.53916 * 139.99786 * 10 7 6 12 12 C 1.33389 * 114.91978 * 179.97438 * 11 10 7 13 13 S 1.75889 * 109.59356 * 0.02562 * 12 11 10 14 14 C 1.33389 * 122.53956 * 319.70682 * 10 7 6 15 15 C 1.41282 * 107.16787 * 180.26278 * 3 2 1 16 16 N 1.30446 * 108.02455 * 359.74449 * 15 3 2 17 17 N 1.34260 * 126.28993 * 179.82352 * 2 1 3 18 18 C 1.46491 * 125.75289 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.46957 * 269.71589 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 H 1.09001 * 109.46825 * 270.18513 * 1 2 3 28 28 H 1.09009 * 109.47195 * 30.17303 * 1 2 3 29 29 H 1.09001 * 109.47700 * 150.17851 * 1 2 3 30 30 H 0.96999 * 119.99717 * 0.02562 * 6 4 3 31 31 H 1.09007 * 109.46769 * 59.99571 * 9 7 6 32 32 H 1.08996 * 109.47494 * 179.97438 * 9 7 6 33 33 H 1.09004 * 109.47654 * 300.00219 * 9 7 6 34 34 H 1.07994 * 122.54043 * 359.96128 * 11 10 7 35 35 H 1.08000 * 125.20498 * 179.97438 * 12 11 10 36 36 H 1.08002 * 125.20146 * 0.02663 * 14 10 7 37 37 H 1.08004 * 125.98895 * 179.72756 * 15 3 2 38 38 H 1.09004 * 109.47166 * 149.71854 * 18 17 2 39 39 H 1.08994 * 109.47507 * 29.71561 * 18 17 2 40 40 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7879 0.0048 6 7 2.8000 3.5107 -0.0069 7 6 2.3646 4.9095 -0.0068 8 1 1.4497 5.0052 -0.5917 9 6 2.1004 5.3614 1.4307 10 6 3.4416 5.7709 -0.6144 11 6 3.1597 6.8258 -1.4652 12 6 4.2279 7.4865 -1.9143 13 16 5.6888 6.7671 -1.2496 14 6 4.7383 5.5781 -0.3685 15 6 3.6590 0.6499 -0.0062 16 7 3.6340 -0.6543 -0.0041 17 7 2.3017 -1.0822 0.0033 18 6 1.8500 -2.4757 0.0082 19 6 1.7024 -2.9510 1.4306 20 1 1.9225 -2.2817 2.2492 21 6 1.2802 -4.2383 1.6871 22 7 1.1461 -4.6513 2.9285 23 14 0.8989 -5.3956 0.2713 24 1 2.1281 -6.1388 -0.1054 25 1 -0.1531 -6.3575 0.6879 26 1 0.4183 -4.6107 -0.8941 27 1 -0.3633 0.0033 1.0277 28 1 -0.3634 0.8885 -0.5166 29 1 -0.3634 -0.8916 -0.5110 30 1 3.7462 3.2973 -0.0115 31 1 3.0152 5.2656 2.0156 32 1 1.7768 6.4022 1.4308 33 1 1.3213 4.7384 1.8702 34 1 2.1514 7.0935 -1.7444 35 1 4.2001 8.3331 -2.5843 36 1 5.1429 4.8081 0.2718 37 1 4.5449 1.2676 -0.0119 38 1 2.5821 -3.0967 -0.5082 39 1 0.8888 -2.5480 -0.5006 40 1 0.8495 -5.5570 3.1089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890439828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:50 Heat of formation + Delta-G solvation = 65.483969 kcal Electronic energy + Delta-G solvation = -23559.353847 eV Core-core repulsion = 20081.341679 eV Total energy + Delta-G solvation = -3478.012168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89556 -39.60608 -38.05656 -34.74994 -33.90707 -32.23778 -31.44431 -30.69761 -29.21022 -27.77445 -26.72736 -25.05797 -23.37246 -22.59362 -21.40275 -19.88704 -19.35899 -18.78176 -18.01306 -17.23108 -16.90254 -16.28490 -15.23907 -14.99666 -14.76311 -14.53926 -14.17210 -13.95073 -13.79755 -13.35496 -13.31076 -12.97477 -12.71676 -12.66832 -12.52244 -12.46324 -12.27754 -12.08484 -11.92286 -11.62829 -11.52535 -11.22572 -10.87135 -10.84502 -10.39406 -10.26537 -9.80192 -9.47031 -9.11673 -9.03938 -8.85568 -8.66684 -8.65729 -7.97176 -6.33539 -4.38209 0.70169 1.36484 1.68664 2.12329 2.35839 2.72430 3.05820 3.11965 3.16519 3.22097 3.52242 3.88116 4.14974 4.51389 4.69004 4.90367 5.00827 5.06571 5.10224 5.17362 5.22837 5.33851 5.49065 5.60289 5.62000 5.66785 5.80420 5.88551 6.03483 6.04891 6.07705 6.20838 6.27382 6.41306 6.48580 6.59723 6.63808 7.01201 7.17577 7.55548 7.71462 8.19347 8.27040 8.57985 8.69737 9.20320 10.78712 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.002561 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.420057 B =10929.052023 C =11302.253252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.329 4.329 4 C 0.606 3.394 5 O -0.554 6.554 6 N -0.729 5.729 7 C 0.206 3.794 8 H 0.097 0.903 9 C -0.157 4.157 10 C -0.104 4.104 11 C -0.124 4.124 12 C -0.212 4.212 13 S 0.097 5.903 14 C -0.206 4.206 15 C 0.061 3.939 16 N -0.293 5.293 17 N -0.314 5.314 18 C 0.224 3.776 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.883 5.883 23 Si 0.874 3.126 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 22.584 -8.983 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.345 4.345 4 C 0.397 3.603 5 O -0.433 6.433 6 N -0.381 5.381 7 C 0.099 3.901 8 H 0.115 0.885 9 C -0.216 4.216 10 C -0.117 4.117 11 C -0.155 4.155 12 C -0.347 4.347 13 S 0.361 5.639 14 C -0.342 4.342 15 C -0.127 4.127 16 N -0.112 5.112 17 N -0.090 5.090 18 C 0.106 3.894 19 C -0.583 4.583 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.700 3.300 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.193 0.807 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.559 21.661 -9.008 24.359 hybrid contribution -1.437 -0.425 -0.351 1.539 sum 5.122 21.236 -9.359 23.766 Atomic orbital electron populations 1.20597 0.86698 1.03661 1.04242 1.21470 0.94960 0.86373 0.93942 1.19661 0.93068 0.92559 1.29187 1.17260 0.85025 0.83799 0.74220 1.90690 1.16617 1.84393 1.51586 1.45853 1.09742 1.04897 1.77620 1.19388 0.94978 0.79249 0.96472 0.88530 1.22169 1.02481 1.01514 0.95407 1.19065 0.94195 0.98533 0.99956 1.20051 1.00242 0.96196 0.98982 1.25603 0.95294 1.06135 1.07705 1.84328 1.09966 1.26367 1.43227 1.25427 0.96393 1.05138 1.07223 1.23720 0.96401 0.92542 0.99992 1.77141 0.98121 1.12385 1.23588 1.48895 1.02746 1.07548 1.49826 1.20160 0.95731 0.73315 1.00226 1.21089 1.47934 0.99322 0.89971 0.90025 1.24795 0.94282 0.97435 0.95861 1.69862 1.45156 1.18370 1.18539 0.86889 0.79094 0.81515 0.82527 1.19527 1.20395 1.18854 0.89460 0.88640 0.91137 0.76927 0.92395 0.91748 0.91263 0.83949 0.81795 0.81768 0.80706 0.93170 0.92963 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.56 36.01 0.34 -1.30 16 2 C 0.17 3.37 7.01 -81.60 -0.57 2.80 16 3 C -0.33 -5.88 6.13 -105.07 -0.64 -6.52 16 4 C 0.61 9.75 7.78 -12.52 -0.10 9.65 16 5 O -0.55 -10.13 14.51 5.28 0.08 -10.05 16 6 N -0.73 -8.78 5.04 -56.01 -0.28 -9.06 16 7 C 0.21 2.19 2.87 -69.09 -0.20 1.99 16 8 H 0.10 1.14 7.52 -51.93 -0.39 0.75 16 9 C -0.16 -1.58 9.47 37.15 0.35 -1.23 16 10 C -0.10 -0.95 4.86 -106.25 -0.52 -1.46 16 11 C -0.12 -1.01 9.95 -41.21 -0.41 -1.42 16 12 C -0.21 -1.54 11.23 29.04 0.33 -1.22 16 13 S 0.10 0.73 23.34 -107.50 -2.51 -1.78 16 14 C -0.21 -1.70 10.21 29.04 0.30 -1.40 16 15 C 0.06 1.03 11.50 -16.98 -0.20 0.84 16 16 N -0.29 -6.15 12.50 30.86 0.39 -5.76 16 17 N -0.31 -6.90 3.56 -57.78 -0.21 -7.10 16 18 C 0.22 5.22 5.04 -5.20 -0.03 5.19 16 19 C -0.55 -14.91 9.94 -34.44 -0.34 -15.25 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.88 -25.82 13.96 55.43 0.77 -25.04 16 23 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.10 1.59 6.52 -51.92 -0.34 1.25 16 29 H 0.07 1.16 7.05 -51.93 -0.37 0.80 16 30 H 0.40 3.95 6.18 -40.82 -0.25 3.70 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.13 7.35 -52.49 -0.39 0.74 16 37 H 0.18 2.11 7.50 -52.48 -0.39 1.72 16 38 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 39 H 0.05 1.14 6.06 -51.93 -0.31 0.82 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -32.10 352.91 -7.85 -39.95 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.96 Total: 5.69 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.78 Total: -7.23 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.67 Total: -46.97 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.10 -7.85 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890439828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.434 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds