Wall clock time and date at job start Tue Mar 31 2020 12:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.51269 * 120.84808 * 2 1 4 4 C 1.53231 * 108.53378 * 231.62084 * 3 2 1 5 5 C 1.52957 * 109.40562 * 305.37284 * 4 3 2 6 6 C 1.50703 * 109.41640 * 183.70682 * 5 4 3 7 7 O 1.21286 * 119.99633 * 249.64006 * 6 5 4 8 8 N 1.34771 * 120.00043 * 69.63152 * 6 5 4 9 9 C 1.37138 * 120.00072 * 4.72357 * 8 6 5 10 10 H 1.07997 * 120.00029 * 231.02160 * 9 8 6 11 11 C 1.38880 * 119.99643 * 51.02170 * 9 8 6 12 12 N 1.31427 * 119.99640 * 200.59210 * 11 9 8 13 13 Si 1.86800 * 120.00509 * 20.58321 * 11 9 8 14 14 H 1.48500 * 109.46990 * 85.23665 * 13 11 9 15 15 H 1.48495 * 109.47218 * 205.23921 * 13 11 9 16 16 H 1.48498 * 109.47053 * 325.24151 * 13 11 9 17 17 C 1.39813 * 120.00092 * 184.72041 * 8 6 5 18 18 C 1.38959 * 120.06352 * 292.39753 * 17 8 6 19 19 C 1.38070 * 119.93353 * 179.76666 * 18 17 8 20 20 C 1.38433 * 120.06282 * 0.51051 * 19 18 17 21 21 Cl 1.73597 * 119.93349 * 179.72271 * 20 19 18 22 22 C 1.38419 * 120.12732 * 359.74155 * 20 19 18 23 23 C 1.38066 * 120.06522 * 359.97438 * 22 20 19 24 24 C 1.52963 * 109.81855 * 63.60026 * 5 4 3 25 25 C 1.51269 * 120.84923 * 180.28160 * 2 1 3 26 26 H 1.07994 * 119.99898 * 179.71763 * 1 2 3 27 27 H 1.07992 * 120.00088 * 359.71963 * 1 2 3 28 28 H 1.08999 * 109.62406 * 351.33427 * 3 2 1 29 29 H 1.09001 * 109.62269 * 111.90972 * 3 2 1 30 30 H 1.09002 * 109.48263 * 185.39373 * 4 3 2 31 31 H 1.08999 * 109.48251 * 65.35277 * 4 3 2 32 32 H 1.09001 * 109.35551 * 303.52906 * 5 4 3 33 33 H 0.97002 * 119.99994 * 180.02562 * 12 11 9 34 34 H 1.07994 * 120.03396 * 0.02562 * 18 17 8 35 35 H 1.07995 * 119.97354 * 180.25543 * 19 18 17 36 36 H 1.07998 * 119.96187 * 179.97438 * 22 20 19 37 37 H 1.08002 * 120.02953 * 179.97438 * 23 22 20 38 38 H 1.08993 * 109.48505 * 176.42034 * 24 5 4 39 39 H 1.09001 * 109.49045 * 56.38787 * 24 5 4 40 40 H 1.08997 * 109.62558 * 248.09229 * 25 2 1 41 41 H 1.09001 * 109.62780 * 8.47221 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1099 1.2543 -1.1389 5 6 3.9767 0.0024 -0.9944 6 6 5.0421 0.0050 -2.0603 7 8 4.9950 -0.7996 -2.9666 8 7 6.0470 0.9014 -2.0064 9 6 6.1548 1.7470 -0.9322 10 1 6.2603 2.8101 -1.0902 11 6 6.1282 1.2361 0.3590 12 7 5.8259 2.0200 1.3697 13 14 6.5219 -0.5651 0.6592 14 1 7.9920 -0.7370 0.7793 15 1 5.8670 -1.0124 1.9146 16 1 6.0198 -1.3776 -0.4778 17 6 6.9797 0.9693 -3.0458 18 6 7.8634 -0.0819 -3.2579 19 6 8.7801 -0.0142 -4.2881 20 6 8.8265 1.1042 -5.1027 21 17 9.9853 1.1889 -6.3925 22 6 7.9509 2.1550 -4.8905 23 6 7.0282 2.0903 -3.8655 24 6 3.1099 -1.2488 -1.1450 25 6 2.0857 -1.2987 -0.0064 26 1 -0.5400 -0.9353 -0.0046 27 1 -0.5400 0.9352 0.0046 28 1 1.4020 2.1334 -0.1547 29 1 2.6023 1.4165 0.9526 30 1 3.7419 2.1413 -1.0942 31 1 2.5885 1.2270 -2.0957 32 1 4.4477 0.0007 -0.0114 33 1 5.8078 1.6633 2.2715 34 1 7.8304 -0.9528 -2.6201 35 1 9.4645 -0.8326 -4.4560 36 1 7.9897 3.0264 -5.5274 37 1 6.3455 2.9108 -3.7002 38 1 3.7418 -2.1359 -1.1047 39 1 2.5886 -1.2171 -2.1018 40 1 2.6023 -1.4212 0.9455 41 1 1.4017 -2.1330 -0.1617 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892087714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:46 Heat of formation + Delta-G solvation = -8.067421 kcal Electronic energy + Delta-G solvation = -25153.577501 eV Core-core repulsion = 21638.039448 eV Total energy + Delta-G solvation = -3515.538053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83995 -40.00294 -38.59221 -37.47096 -36.64006 -34.32162 -33.54487 -32.09894 -31.96644 -30.62164 -27.65163 -26.69638 -24.30415 -23.91671 -23.65958 -22.38880 -20.94187 -19.56485 -19.31800 -18.43871 -17.51796 -17.37254 -16.71691 -16.15743 -15.88575 -15.68548 -15.46831 -15.32793 -14.71684 -14.64320 -14.52470 -14.45093 -14.27151 -14.13987 -13.64040 -13.23583 -13.08619 -13.05381 -12.90324 -12.69848 -12.51156 -12.35860 -12.23578 -11.93470 -11.89948 -11.80499 -11.37198 -11.16585 -11.01418 -10.57346 -10.04802 -10.03451 -9.85204 -9.25310 -8.57749 -6.33159 0.12472 0.30220 1.09230 1.11821 1.20956 1.27932 1.41588 1.77151 2.06621 2.48462 2.65685 2.83126 3.74005 3.78300 3.82671 3.88968 3.93634 4.15395 4.27066 4.30148 4.39757 4.43603 4.44935 4.51825 4.56606 4.71151 4.87012 4.89424 4.93191 4.96955 4.99354 5.06969 5.17564 5.18281 5.23636 5.35442 5.42842 5.51377 5.58420 5.63595 5.81460 5.97933 6.05339 6.38595 6.88470 7.20976 7.69487 8.53005 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.004230 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.447521 B = 6617.951044 C = 7066.992503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.135 4.135 3 C -0.076 4.076 4 C -0.088 4.088 5 C -0.091 4.091 6 C 0.500 3.500 7 O -0.601 6.601 8 N -0.445 5.445 9 C -0.347 4.347 10 H 0.085 0.915 11 C 0.070 3.930 12 N -0.865 5.865 13 Si 0.877 3.123 14 H -0.280 1.280 15 H -0.261 1.261 16 H -0.265 1.265 17 C 0.143 3.857 18 C -0.127 4.127 19 C -0.097 4.097 20 C -0.050 4.050 21 Cl -0.061 7.061 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.096 4.096 25 C -0.082 4.082 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.283 0.717 34 H 0.107 0.893 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -1.635 -5.267 6.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.135 4.135 3 C -0.113 4.113 4 C -0.126 4.126 5 C -0.112 4.112 6 C 0.292 3.708 7 O -0.485 6.485 8 N -0.164 5.164 9 C -0.473 4.473 10 H 0.102 0.898 11 C -0.138 4.138 12 N -0.500 5.500 13 Si 0.701 3.299 14 H -0.207 1.207 15 H -0.186 1.186 16 H -0.190 1.190 17 C 0.053 3.947 18 C -0.147 4.147 19 C -0.116 4.116 20 C -0.077 4.077 21 Cl -0.032 7.032 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.119 4.119 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.154 0.846 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.480 -1.968 -5.588 6.423 hybrid contribution 0.786 -0.791 0.591 1.262 sum -1.694 -2.759 -4.997 5.955 Atomic orbital electron populations 1.23764 0.94013 1.02923 1.01467 1.22016 0.95746 0.95261 1.00440 1.20717 0.96911 0.95517 0.98186 1.21249 0.96285 0.96648 0.98384 1.21229 0.94523 0.98188 0.97258 1.21182 0.82356 0.80616 0.86662 1.90527 1.77969 1.41174 1.38809 1.41412 1.21654 1.34992 1.18294 1.18607 1.55703 0.90275 0.82699 0.89778 1.25616 0.93807 0.99091 0.95255 1.69733 1.42230 1.37503 1.00529 0.86948 0.79149 0.84578 0.79190 1.20667 1.18571 1.19006 1.18522 0.90986 0.95011 0.90198 1.21221 0.95529 0.98846 0.99092 1.21014 0.98763 0.97985 0.93794 1.20892 0.95875 0.96981 0.93958 1.98338 1.58006 1.98385 1.48458 1.21112 0.93670 0.98615 0.97609 1.21288 0.99907 0.98127 0.94384 1.21382 0.96766 0.95618 0.99588 1.20828 0.97257 0.96140 0.97689 0.86998 0.87285 0.89708 0.92032 0.90949 0.92616 0.90359 0.90678 0.87437 0.82933 0.82020 0.84617 0.93157 0.91540 0.91714 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.28 13.99 67.77 0.95 -3.33 16 2 C -0.13 -3.89 5.35 -16.13 -0.09 -3.98 16 3 C -0.08 -2.49 6.03 30.11 0.18 -2.30 16 4 C -0.09 -3.38 5.09 30.66 0.16 -3.22 16 5 C -0.09 -3.85 0.90 -11.57 -0.01 -3.86 16 6 C 0.50 23.79 4.43 87.66 0.39 24.18 16 7 O -0.60 -30.80 15.60 -3.05 -0.05 -30.85 16 8 N -0.44 -21.00 2.03 -458.89 -0.93 -21.93 16 9 C -0.35 -17.22 7.52 84.02 0.63 -16.59 16 10 H 0.08 4.45 8.06 -2.91 -0.02 4.42 16 11 C 0.07 3.47 4.08 84.91 0.35 3.82 16 12 N -0.87 -43.83 13.96 21.65 0.30 -43.53 16 13 Si 0.88 40.38 25.07 68.60 1.72 42.10 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.27 -12.68 5.37 99.48 0.53 -12.15 16 17 C 0.14 6.19 4.80 38.21 0.18 6.37 16 18 C -0.13 -5.11 9.35 22.40 0.21 -4.90 16 19 C -0.10 -3.14 9.82 22.28 0.22 -2.92 16 20 C -0.05 -1.50 6.32 22.36 0.14 -1.36 16 21 Cl -0.06 -1.49 28.95 -2.72 -0.08 -1.56 16 22 C -0.09 -2.73 9.82 22.27 0.22 -2.51 16 23 C -0.12 -4.30 9.81 22.40 0.22 -4.08 16 24 C -0.10 -3.54 4.52 30.66 0.14 -3.41 16 25 C -0.08 -2.46 6.03 30.10 0.18 -2.28 16 26 H 0.11 2.17 7.91 -2.91 -0.02 2.14 16 27 H 0.11 2.22 7.92 -2.91 -0.02 2.20 16 28 H 0.08 2.39 7.89 -2.39 -0.02 2.37 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 3.11 6.50 -2.39 -0.02 3.10 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 3.52 3.07 -2.39 -0.01 3.52 16 33 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 39 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.28 7.89 -2.39 -0.02 2.26 16 Total: -1.00 -56.87 343.46 5.89 -50.98 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.86 Total: 25.16 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 4.07 Total: -20.37 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.63 Total: -65.46 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.85 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.72 Total: 42.10 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.56 kcal Total: -56.87 5.89 -50.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892087714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.915 kcal (2) G-P(sol) polarization free energy of solvation -56.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds