Wall clock time and date at job start Tue Mar 31 2020 12:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.50710 * 109.46958 * 180.02562 * 7 6 4 9 9 C 1.38739 * 120.77302 * 89.99893 * 8 7 6 10 10 C 1.38102 * 119.22379 * 179.97438 * 9 8 7 11 11 N 1.31935 * 120.80067 * 359.97438 * 10 9 8 12 12 C 1.32028 * 121.68586 * 0.02562 * 11 10 9 13 13 F 1.35107 * 119.65186 * 179.97438 * 12 11 10 14 14 C 1.38498 * 120.77323 * 269.72218 * 8 7 6 15 15 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 16 16 N 1.30427 * 108.01038 * 359.72043 * 15 3 2 17 17 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 18 18 C 1.46491 * 125.74900 * 359.97341 * 17 2 1 19 19 C 1.50702 * 109.46957 * 90.00099 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 28 28 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 29 29 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 30 30 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 31 31 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 32 32 H 1.08001 * 120.39252 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.60172 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.43394 * 359.97438 * 14 8 7 35 35 H 1.08000 * 125.99491 * 179.97438 * 15 3 2 36 36 H 1.09004 * 109.47166 * 330.00365 * 18 17 2 37 37 H 1.08994 * 109.47507 * 210.00071 * 18 17 2 38 38 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4569 5.8353 0.0029 9 6 4.0013 6.2902 -1.1894 10 6 5.0624 7.1734 -1.1525 11 7 5.5587 7.5854 -0.0016 12 6 5.0669 7.1743 1.1527 13 9 5.6072 7.6224 2.3071 14 6 3.9993 6.2918 1.1926 15 6 3.6599 0.6496 -0.0006 16 7 3.6340 -0.6544 0.0051 17 7 2.3015 -1.0818 -0.0005 18 6 1.8499 -2.4754 -0.0006 19 6 1.6945 -2.9530 -1.4214 20 1 1.9110 -2.2853 -2.2423 21 6 1.2819 -4.2443 -1.6735 22 7 1.0187 -5.0574 -0.6739 23 14 1.0967 -4.8386 -3.4346 24 1 2.3810 -5.4230 -3.8975 25 1 0.0314 -5.8711 -3.4992 26 1 0.7306 -3.6943 -4.3074 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8897 -0.5143 30 1 1.6897 5.0353 -0.8860 31 1 1.6910 5.0334 0.8939 32 1 3.5995 5.9583 -2.1353 33 1 5.4912 7.5311 -2.0770 34 1 3.5973 5.9622 2.1393 35 1 4.5461 1.2669 -0.0012 36 1 0.8913 -2.5467 0.5136 37 1 2.5846 -3.0955 0.5129 38 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893250718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:56 Heat of formation + Delta-G solvation = -40.583059 kcal Electronic energy + Delta-G solvation = -24980.467052 eV Core-core repulsion = 20931.642297 eV Total energy + Delta-G solvation = -4048.824755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.08519 -42.43121 -41.37951 -40.68485 -37.51101 -35.83753 -34.58129 -33.86862 -32.85347 -31.94209 -29.72230 -28.64335 -27.99015 -25.47809 -24.74343 -24.02628 -23.06841 -21.79906 -20.51534 -18.93773 -18.83601 -18.67666 -18.50643 -17.54635 -17.20732 -17.11295 -17.03836 -16.80519 -16.26773 -15.98595 -15.47067 -15.13311 -14.86045 -14.56068 -14.38903 -14.26321 -14.14821 -13.91206 -13.66019 -13.61956 -13.40101 -13.13970 -13.08204 -12.98986 -12.71889 -12.31542 -11.86445 -11.85167 -11.70057 -11.39882 -10.98330 -10.81187 -10.76325 -10.32599 -10.06609 -9.66445 -8.38324 -6.54601 -0.20583 -0.12226 0.43208 1.18889 1.38466 1.39598 1.45302 1.52669 1.90399 2.23669 2.33004 2.51559 2.59822 2.94601 3.24784 3.55440 3.67195 3.78619 3.86375 3.89887 4.00720 4.16016 4.17967 4.36251 4.52381 4.56268 4.62873 4.65437 4.76992 4.78711 4.88394 4.98660 5.11463 5.12187 5.36235 5.48741 5.54126 5.60533 5.73627 5.97215 6.53941 6.56424 6.72539 6.87651 7.16807 8.69698 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.002323 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.530971 B =12052.611577 C =12117.154146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.163 3.837 3 C -0.322 4.322 4 C 0.563 3.437 5 O -0.537 6.537 6 O -0.347 6.347 7 C 0.105 3.895 8 C -0.026 4.026 9 C -0.148 4.148 10 C 0.134 3.866 11 N -0.536 5.536 12 C 0.282 3.718 13 F -0.122 7.122 14 C -0.168 4.168 15 C 0.097 3.903 16 N -0.337 5.337 17 N -0.334 5.334 18 C 0.266 3.734 19 C -0.557 4.557 20 H 0.054 0.946 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.272 1.272 26 H -0.268 1.268 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.203 0.797 34 H 0.163 0.837 35 H 0.221 0.779 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 22.470 -0.217 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.026 3.974 3 C -0.335 4.335 4 C 0.411 3.589 5 O -0.428 6.428 6 O -0.264 6.264 7 C 0.032 3.968 8 C -0.035 4.035 9 C -0.168 4.168 10 C -0.022 4.022 11 N -0.251 5.251 12 C 0.130 3.870 13 F -0.102 7.102 14 C -0.190 4.190 15 C -0.090 4.090 16 N -0.156 5.156 17 N -0.110 5.110 18 C 0.147 3.853 19 C -0.595 4.595 20 H 0.072 0.928 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.192 1.192 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.193 0.807 33 H 0.220 0.780 34 H 0.181 0.819 35 H 0.238 0.762 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.122 21.726 -0.072 21.950 hybrid contribution -0.929 -0.372 -0.209 1.022 sum 2.193 21.355 -0.281 21.469 Atomic orbital electron populations 1.20707 0.85027 1.04895 1.04673 1.21986 0.96146 0.86249 0.93036 1.19028 0.93657 0.90082 1.30710 1.19629 0.83252 0.84548 0.71506 1.90771 1.18341 1.84572 1.49161 1.86565 1.39313 1.15777 1.84750 1.21923 0.93167 0.76108 1.05616 1.19840 0.95670 0.94935 0.93006 1.22538 0.96805 0.97570 0.99873 1.23147 0.92110 0.92219 0.94708 1.67032 1.32109 1.27122 0.98854 1.18288 0.92278 0.94642 0.81825 1.91609 1.85546 1.88021 1.44990 1.21912 0.96690 0.98771 1.01579 1.24521 0.97858 0.91238 0.95419 1.77181 0.98306 1.14261 1.25861 1.49192 1.03377 1.07949 1.50509 1.19448 0.95545 0.71947 0.98313 1.21397 1.48126 0.98448 0.91517 0.92801 1.25715 0.93810 0.95940 1.02200 1.69992 1.44789 1.07541 1.33038 0.85356 0.78254 0.78277 0.78656 1.20014 1.19694 1.19196 0.88344 0.87726 0.90619 0.87923 0.88760 0.80720 0.77991 0.81939 0.76246 0.92622 0.94907 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.09 9.34 71.24 0.67 -2.43 16 2 C 0.16 6.21 7.01 42.17 0.30 6.51 16 3 C -0.32 -10.95 6.13 -20.16 -0.12 -11.08 16 4 C 0.56 16.40 7.95 70.20 0.56 16.95 16 5 O -0.54 -16.74 14.63 19.77 0.29 -16.45 16 6 O -0.35 -7.99 10.05 -56.67 -0.57 -8.56 16 7 C 0.11 1.69 5.65 71.24 0.40 2.09 16 8 C -0.03 -0.38 5.56 -19.68 -0.11 -0.49 16 9 C -0.15 -1.65 9.81 22.36 0.22 -1.43 16 10 C 0.13 1.65 11.18 84.64 0.95 2.60 16 11 N -0.54 -10.39 10.37 -196.91 -2.04 -12.43 16 12 C 0.28 5.56 8.41 84.74 0.71 6.27 16 13 F -0.12 -2.64 17.29 44.97 0.78 -1.87 16 14 C -0.17 -2.69 9.79 22.41 0.22 -2.47 16 15 C 0.10 3.26 11.87 85.67 1.02 4.28 16 16 N -0.34 -14.26 12.50 -56.25 -0.70 -14.97 16 17 N -0.33 -14.79 3.56 -336.67 -1.20 -15.99 16 18 C 0.27 13.18 5.78 85.64 0.50 13.67 16 19 C -0.56 -29.60 9.39 25.60 0.24 -29.36 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.03 1.31 5.46 84.66 0.46 1.77 16 22 N -0.92 -49.89 13.29 21.45 0.28 -49.61 16 23 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.10 3.19 6.51 -2.39 -0.02 3.17 16 29 H 0.07 2.63 7.70 -2.39 -0.02 2.61 16 30 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.22 5.47 8.06 -2.91 -0.02 5.44 16 36 H 0.06 2.73 7.62 -2.38 -0.02 2.71 16 37 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -65.83 348.52 5.97 -59.86 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.10 Total: 9.71 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.00 Total: 6.89 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.66 Total: -92.99 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.28 Total: -25.00 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -65.83 5.97 -59.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893250718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.276 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds