Wall clock time and date at job start Tue Mar 31 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29952 * 125.30502 * 2 1 4 4 O 1.41881 * 107.41390 * 180.26381 * 3 2 1 5 5 N 1.41879 * 106.38893 * 359.97438 * 4 3 2 6 6 C 1.29959 * 107.41206 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.30048 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.46809 * 269.99982 * 7 6 5 9 9 C 1.40005 * 119.99533 * 180.02562 * 8 7 6 10 10 C 1.38634 * 120.10325 * 0.02562 * 9 8 7 11 11 C 1.38284 * 120.00699 * 179.97438 * 10 9 8 12 12 C 1.38269 * 120.20422 * 0.04232 * 11 10 9 13 13 C 1.38240 * 120.19619 * 0.02562 * 12 11 10 14 14 C 1.38737 * 119.99493 * 359.67383 * 13 12 11 15 15 S 1.76192 * 120.10432 * 180.32470 * 14 13 12 16 16 C 1.81404 * 103.00003 * 353.33548 * 15 14 13 17 17 H 1.08996 * 109.47396 * 48.26177 * 16 15 14 18 18 C 1.53001 * 109.46870 * 288.25918 * 16 15 14 19 19 C 1.50705 * 109.47278 * 168.26375 * 16 15 14 20 20 H 1.08001 * 119.99627 * 2.68347 * 19 16 15 21 21 C 1.37874 * 119.99873 * 182.68463 * 19 16 15 22 22 N 1.31519 * 119.99787 * 201.45665 * 21 19 16 23 23 Si 1.86800 * 120.00048 * 21.46234 * 21 19 16 24 24 H 1.48502 * 109.46883 * 93.04238 * 23 21 19 25 25 H 1.48500 * 109.47121 * 213.04189 * 23 21 19 26 26 H 1.48492 * 109.47335 * 333.04366 * 23 21 19 27 27 H 1.09005 * 109.47122 * 269.69838 * 1 2 3 28 28 H 1.09005 * 109.46813 * 29.69648 * 1 2 3 29 29 H 1.08996 * 109.47121 * 149.69868 * 1 2 3 30 30 H 1.08993 * 109.47273 * 30.00233 * 7 6 5 31 31 H 1.09003 * 109.46906 * 150.00495 * 7 6 5 32 32 H 0.96998 * 120.00114 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.99544 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.90055 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.89972 * 179.97438 * 12 11 10 36 36 H 1.08005 * 120.00707 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47427 * 55.37151 * 18 16 15 38 38 H 1.09006 * 109.47030 * 175.36916 * 18 16 15 39 39 H 1.09002 * 109.47427 * 295.36517 * 18 16 15 40 40 H 0.96997 * 119.99838 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0062 5 7 3.5710 -0.7936 -0.0093 6 6 2.3212 -1.1499 -0.0046 7 6 1.8209 -2.5714 -0.0051 8 7 1.6529 -3.0295 -1.3865 9 6 1.1944 -4.3272 -1.6427 10 6 0.8981 -5.1803 -0.5909 11 6 0.4447 -6.4616 -0.8462 12 6 0.2862 -6.8966 -2.1491 13 6 0.5805 -6.0534 -3.2043 14 6 1.0299 -4.7643 -2.9576 15 16 1.3977 -3.6844 -4.3003 16 6 1.2317 -4.7634 -5.7490 17 1 0.2955 -5.3178 -5.6839 18 6 2.4042 -5.7455 -5.7904 19 6 1.2334 -3.9260 -7.0020 20 1 1.3687 -2.8565 -6.9365 21 6 1.0624 -4.5252 -8.2319 22 7 1.4704 -3.9150 -9.3231 23 14 0.2508 -6.2037 -8.3482 24 1 -1.2065 -6.0340 -8.5778 25 1 0.8446 -6.9634 -9.4776 26 1 0.4690 -6.9479 -7.0819 27 1 -0.3634 -0.0054 1.0277 28 1 -0.3633 0.8928 -0.5091 29 1 -0.3633 -0.8872 -0.5185 30 1 2.5418 -3.2105 0.5045 31 1 0.8629 -2.6195 0.5126 32 1 1.8588 -2.4334 -2.1235 33 1 1.0213 -4.8442 0.4281 34 1 0.2140 -7.1246 -0.0255 35 1 -0.0678 -7.8984 -2.3429 36 1 0.4560 -6.3965 -4.2208 37 1 2.4522 -6.2940 -4.8497 38 1 2.2620 -6.4466 -6.6129 39 1 3.3337 -5.1957 -5.9383 40 1 1.3497 -4.3364 -10.1884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901989047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:14 Heat of formation + Delta-G solvation = 100.661170 kcal Electronic energy + Delta-G solvation = -23538.773155 eV Core-core repulsion = 20062.286385 eV Total energy + Delta-G solvation = -3476.486770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67848 -40.20715 -37.18934 -36.08983 -35.19904 -34.08753 -33.36985 -31.71774 -30.51931 -29.71143 -27.53238 -27.24983 -24.10533 -23.64087 -23.16747 -22.35814 -21.67400 -19.39144 -18.57846 -18.06430 -17.66031 -17.31727 -17.05038 -16.48274 -15.87046 -15.82154 -15.44802 -15.10494 -15.06661 -14.86526 -14.79499 -14.31820 -14.28582 -14.10503 -13.79587 -13.69148 -13.45143 -13.02851 -12.95974 -12.90308 -12.70839 -12.49125 -12.39541 -12.13951 -11.86330 -11.73267 -11.67874 -11.43248 -11.08146 -10.78323 -10.65499 -10.37780 -8.82915 -8.43714 -7.88673 -6.43645 -0.70234 0.47491 0.70674 0.72942 0.92529 1.29960 1.35259 1.38129 1.43264 1.87990 1.94116 2.27452 2.49199 2.71711 2.89209 2.98121 3.47681 3.85572 3.99785 4.09689 4.29197 4.34836 4.39284 4.42607 4.51220 4.55790 4.59441 4.61785 4.66593 4.69488 4.78315 4.93492 5.06338 5.09046 5.28928 5.34808 5.45306 5.53751 5.72655 5.77486 5.93660 6.06373 6.34950 6.51287 6.54925 7.16313 8.72292 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003723 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.882762 B = 7518.124344 C = 8904.068081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.099 3.901 3 N -0.303 5.303 4 O -0.011 6.011 5 N -0.278 5.278 6 C 0.073 3.927 7 C 0.196 3.804 8 N -0.748 5.748 9 C 0.224 3.776 10 C -0.175 4.175 11 C -0.076 4.076 12 C -0.161 4.161 13 C -0.110 4.110 14 C -0.162 4.162 15 S -0.177 6.177 16 C 0.067 3.933 17 H 0.049 0.951 18 C -0.136 4.136 19 C -0.533 4.533 20 H 0.035 0.965 21 C 0.039 3.961 22 N -0.924 5.924 23 Si 0.927 3.073 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.231 1.231 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.396 0.604 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 -3.584 24.886 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 N -0.052 5.052 4 O -0.146 6.146 5 N -0.023 5.023 6 C -0.111 4.111 7 C 0.071 3.929 8 N -0.381 5.381 9 C 0.117 3.883 10 C -0.199 4.199 11 C -0.097 4.097 12 C -0.182 4.182 13 C -0.134 4.134 14 C -0.279 4.279 15 S 0.068 5.932 16 C -0.062 4.062 17 H 0.067 0.933 18 C -0.195 4.195 19 C -0.571 4.571 20 H 0.054 0.946 21 C -0.163 4.163 22 N -0.561 5.561 23 Si 0.749 3.251 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.154 1.154 27 H 0.149 0.851 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.231 0.769 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.494 -1.451 24.814 25.260 hybrid contribution -0.606 -1.424 -1.616 2.237 sum -5.099 -2.876 23.199 23.926 Atomic orbital electron populations 1.20914 0.80759 1.06591 1.07077 1.25299 1.02136 0.87667 0.93243 1.79966 0.88512 1.20735 1.15996 1.93400 1.21883 1.13811 1.85542 1.79954 1.19289 0.91359 1.11673 1.24977 0.89371 1.00092 0.96666 1.20148 1.03949 0.83858 0.84902 1.44594 1.74694 1.12366 1.06424 1.17324 0.94587 0.85348 0.91054 1.20902 1.06806 0.94336 0.97875 1.21277 0.96364 0.95405 0.96640 1.21104 1.04305 1.00229 0.92608 1.21147 0.99494 0.92780 1.00024 1.21434 1.12256 0.98993 0.95173 1.84979 1.87723 1.21067 0.99465 1.21032 0.97903 0.94839 0.92401 0.93299 1.22285 0.98547 0.98206 1.00455 1.20447 1.53100 0.93879 0.89679 0.94637 1.25659 0.94296 1.01860 0.94488 1.70123 1.43948 1.42501 0.99522 0.86112 0.79310 0.79996 0.79679 1.19600 1.20387 1.15411 0.85085 0.88771 0.87121 0.87977 0.84418 0.76927 0.82184 0.82474 0.84615 0.87440 0.92421 0.92941 0.93612 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.05 71.24 0.72 -0.09 16 2 C 0.10 1.76 7.19 43.49 0.31 2.07 16 3 N -0.30 -7.51 12.98 -47.16 -0.61 -8.12 16 4 O -0.01 -0.33 13.71 70.15 0.96 0.63 16 5 N -0.28 -7.21 12.98 -47.15 -0.61 -7.82 16 6 C 0.07 1.38 6.55 43.49 0.29 1.67 16 7 C 0.20 2.60 5.08 85.63 0.43 3.03 16 8 N -0.75 -16.35 5.68 -342.55 -1.94 -18.30 16 9 C 0.22 5.54 6.66 38.24 0.25 5.79 16 10 C -0.18 -3.05 9.31 22.38 0.21 -2.85 16 11 C -0.08 -1.31 10.04 22.29 0.22 -1.09 16 12 C -0.16 -3.68 10.04 22.28 0.22 -3.46 16 13 C -0.11 -3.39 8.13 22.39 0.18 -3.21 16 14 C -0.16 -5.27 6.00 22.70 0.14 -5.13 16 15 S -0.18 -7.26 19.74 -56.49 -1.12 -8.38 16 16 C 0.07 3.12 1.52 29.85 0.05 3.16 16 17 H 0.05 2.23 5.25 -2.39 -0.01 2.22 16 18 C -0.14 -5.79 8.22 71.98 0.59 -5.20 16 19 C -0.53 -30.20 8.98 25.60 0.23 -29.97 16 20 H 0.04 2.28 7.96 -2.91 -0.02 2.26 16 21 C 0.04 2.20 5.28 84.65 0.45 2.65 16 22 N -0.92 -56.03 13.96 21.45 0.30 -55.73 16 23 Si 0.93 41.52 25.97 68.60 1.78 43.30 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.23 -9.30 5.63 99.48 0.56 -8.74 16 27 H 0.13 0.30 8.14 -2.38 -0.02 0.29 16 28 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.11 0.75 7.79 -2.39 -0.02 0.74 16 30 H 0.10 1.16 7.96 -2.39 -0.02 1.14 16 31 H 0.14 0.69 7.60 -2.39 -0.02 0.67 16 32 H 0.40 10.78 7.01 -92.71 -0.65 10.13 16 33 H 0.16 1.49 6.74 -2.91 -0.02 1.47 16 34 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.11 3.68 5.06 -2.91 -0.01 3.66 16 37 H 0.06 2.15 6.38 -2.39 -0.02 2.14 16 38 H 0.05 2.20 5.20 -2.38 -0.01 2.19 16 39 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -73.51 343.71 3.35 -70.17 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.30 Total: 16.87 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 4.29 Total: -32.62 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.87 Total: -89.97 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: 0.96 Total: 0.63 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.78 Total: 43.30 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.12 Total: -8.38 kcal Total: -73.51 3.35 -70.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901989047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.829 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds