Wall clock time and date at job start Tue Mar 31 2020 12:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 S 1.75847 * 125.38659 * 237.48664 * 3 2 1 5 5 C 1.75726 * 91.31396 * 180.02562 * 4 3 2 6 6 C 1.33320 * 110.44444 * 0.02562 * 5 4 3 7 7 C 1.38013 * 125.38255 * 57.48896 * 3 2 1 8 8 C 1.47358 * 123.09629 * 359.97438 * 7 3 2 9 9 O 1.21612 * 119.99654 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00160 * 180.02562 * 8 7 3 11 11 C 1.46497 * 120.00057 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47079 * 179.97438 * 11 10 8 13 13 C 1.53042 * 109.46031 * 295.02532 * 12 11 10 14 14 C 1.53188 * 109.31468 * 178.60128 * 13 12 11 15 15 N 1.46928 * 108.76636 * 54.65631 * 14 13 12 16 16 C 1.36938 * 120.63064 * 126.35940 * 15 14 13 17 17 H 1.07999 * 119.99963 * 331.85964 * 16 15 14 18 18 C 1.38814 * 119.99734 * 151.85792 * 16 15 14 19 19 N 1.31622 * 119.99870 * 343.07819 * 18 16 15 20 20 Si 1.86796 * 119.99916 * 163.07453 * 18 16 15 21 21 H 1.48495 * 109.47167 * 59.99886 * 20 18 16 22 22 H 1.48500 * 109.47073 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46971 * 300.00270 * 20 18 16 24 24 C 1.46924 * 118.73764 * 306.38598 * 15 14 13 25 25 C 1.53034 * 109.46225 * 174.97454 * 12 11 10 26 26 H 1.08003 * 124.77988 * 179.73360 * 5 4 3 27 27 H 1.07994 * 122.40023 * 179.97438 * 6 5 4 28 28 H 0.97005 * 119.99430 * 359.97438 * 10 8 7 29 29 H 1.08994 * 109.46931 * 299.99712 * 11 10 8 30 30 H 1.09000 * 109.47190 * 59.99714 * 11 10 8 31 31 H 1.08997 * 109.46004 * 54.99386 * 12 11 10 32 32 H 1.09001 * 109.49571 * 298.57017 * 13 12 11 33 33 H 1.09010 * 109.49620 * 58.66262 * 13 12 11 34 34 H 1.09000 * 109.59782 * 294.86659 * 14 13 12 35 35 H 1.09004 * 109.69998 * 174.50719 * 14 13 12 36 36 H 0.96997 * 119.99721 * 180.02562 * 19 18 16 37 37 H 1.09007 * 109.58375 * 293.81962 * 24 15 14 38 38 H 1.08997 * 109.70305 * 173.46614 * 24 15 14 39 39 H 1.09001 * 109.49473 * 301.33336 * 25 12 11 40 40 H 1.09002 * 109.50134 * 61.39609 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5860 0.7717 1.2089 5 6 5.0418 0.2438 0.3783 6 6 4.7280 -0.4521 -0.7147 7 6 3.3674 -0.6038 -0.9489 8 6 2.8272 -1.3413 -2.1046 9 8 1.6244 -1.4389 -2.2553 10 7 3.6660 -1.9084 -2.9941 11 6 3.1289 -2.6420 -4.1428 12 6 4.2840 -3.1807 -4.9893 13 6 5.0678 -2.0097 -5.5865 14 6 6.2439 -2.5520 -6.4046 15 7 5.7292 -3.5030 -7.3993 16 6 6.0281 -3.3537 -8.7273 17 1 6.2287 -2.3712 -9.1285 18 6 6.0732 -4.4651 -9.5577 19 7 6.1627 -5.6713 -9.0386 20 14 6.0069 -4.2488 -11.4119 21 1 7.1583 -3.4226 -11.8554 22 1 6.0700 -5.5795 -12.0680 23 1 4.7390 -3.5724 -11.7863 24 6 4.8872 -4.6168 -6.9421 25 6 3.7265 -4.0513 -6.1176 26 1 6.0490 0.4574 0.7045 27 1 5.4780 -0.8687 -1.3706 28 1 4.6254 -1.8307 -2.8737 29 1 2.5183 -3.4730 -3.7898 30 1 2.5170 -1.9727 -4.7475 31 1 4.9456 -3.7784 -4.3624 32 1 4.4129 -1.4258 -6.2332 33 1 5.4448 -1.3768 -4.7830 34 1 6.9462 -3.0593 -5.7432 35 1 6.7486 -1.7298 -6.9120 36 1 6.1946 -6.4479 -9.6189 37 1 5.4789 -5.2926 -6.3245 38 1 4.4944 -5.1580 -7.8029 39 1 3.1487 -4.8719 -5.6923 40 1 3.0839 -3.4482 -6.7590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906798433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:09 Heat of formation + Delta-G solvation = 22.375717 kcal Electronic energy + Delta-G solvation = -23468.177971 eV Core-core repulsion = 19988.296490 eV Total energy + Delta-G solvation = -3479.881482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27879 -39.48682 -38.33471 -37.43742 -36.43414 -34.49195 -32.54124 -31.39782 -31.17138 -28.91352 -26.88001 -25.31582 -23.82407 -22.84901 -22.49143 -21.62411 -20.82980 -20.07321 -18.64071 -17.81776 -17.22048 -16.83003 -16.55161 -16.38420 -15.73187 -15.50360 -15.29426 -15.23413 -14.88208 -14.69461 -14.66980 -14.51725 -14.05014 -14.00215 -13.82173 -13.54900 -13.31224 -13.02924 -12.97969 -12.79065 -12.53963 -12.26325 -12.07812 -12.01463 -11.81395 -11.60468 -11.32191 -11.09216 -11.02493 -10.50726 -10.22363 -9.90957 -9.61311 -8.63795 -7.85554 -5.29870 -0.91973 0.03968 0.76432 0.95888 1.46863 1.49766 1.55794 1.68708 1.85234 2.15409 2.39156 2.52692 2.89727 3.29017 3.64896 3.74492 3.84985 3.96155 4.07742 4.10641 4.27568 4.53859 4.57542 4.71861 4.75176 4.79339 4.86895 4.96373 5.02160 5.06203 5.13445 5.16823 5.30824 5.32212 5.37039 5.46819 5.58552 5.68493 5.81993 6.32481 6.42226 6.47801 7.12426 7.18277 7.91511 8.41275 9.20331 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.002402 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.057969 B =11655.801497 C =12184.858385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.293 3.707 3 C -0.137 4.137 4 S 0.282 5.718 5 C -0.167 4.167 6 C -0.128 4.128 7 C -0.088 4.088 8 C 0.559 3.441 9 O -0.581 6.581 10 N -0.697 5.697 11 C 0.136 3.864 12 C -0.077 4.077 13 C -0.115 4.115 14 C 0.140 3.860 15 N -0.613 5.613 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.282 1.282 24 C 0.178 3.822 25 C -0.124 4.124 26 H 0.224 0.776 27 H 0.184 0.816 28 H 0.418 0.582 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.249 0.751 37 H 0.001 0.999 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 13.199 23.494 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.022 4.022 3 C -0.260 4.260 4 S 0.549 5.451 5 C -0.305 4.305 6 C -0.155 4.155 7 C -0.111 4.111 8 C 0.345 3.655 9 O -0.462 6.462 10 N -0.349 5.349 11 C 0.012 3.988 12 C -0.096 4.096 13 C -0.154 4.154 14 C 0.015 3.985 15 N -0.337 5.337 16 C -0.392 4.392 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.208 1.208 24 C 0.052 3.948 25 C -0.164 4.164 26 H 0.241 0.759 27 H 0.201 0.799 28 H 0.257 0.743 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.015 13.849 24.643 28.267 hybrid contribution 0.680 -1.303 -2.767 3.133 sum 0.665 12.546 21.876 25.227 Atomic orbital electron populations 1.81199 1.12854 1.09236 1.08784 1.24549 0.91649 0.93096 0.92892 1.20734 0.88603 1.11548 1.05066 1.84277 0.93386 1.47104 1.20370 1.26463 1.04147 1.01702 0.98156 1.20196 0.92994 1.02122 1.00189 1.19464 0.94727 1.01527 0.95420 1.18148 0.85823 0.78884 0.82633 1.90842 1.16845 1.61838 1.76632 1.45720 1.10777 1.53662 1.24740 1.21317 0.96062 0.95383 0.86074 1.21148 0.95888 0.96976 0.95553 1.21956 0.97451 0.96727 0.99280 1.21091 0.94322 0.92197 0.90918 1.44327 1.56307 1.29989 1.03033 1.19470 1.41930 0.92226 0.85567 0.91766 1.25747 1.01280 0.95465 1.02130 1.70161 1.55014 0.97889 1.34983 0.85418 0.78244 0.76316 0.80952 1.19973 1.22121 1.20813 1.20546 0.89666 0.88857 0.95718 1.21989 0.98357 0.99075 0.96941 0.75935 0.79891 0.74269 0.91954 0.92641 0.89801 0.93425 0.89011 0.95918 0.92994 0.94188 0.98098 0.93330 0.91470 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.17 18.54 19.00 0.35 -13.82 16 2 C 0.29 7.76 13.95 88.33 1.23 8.99 16 3 C -0.14 -2.43 6.36 23.46 0.15 -2.28 16 4 S 0.28 1.94 23.27 -56.49 -1.31 0.63 16 5 C -0.17 -0.38 11.16 66.71 0.74 0.37 16 6 C -0.13 -0.87 9.61 21.31 0.20 -0.67 16 7 C -0.09 -1.45 5.86 -20.78 -0.12 -1.57 16 8 C 0.56 13.49 7.79 86.64 0.67 14.17 16 9 O -0.58 -20.06 15.19 -4.07 -0.06 -20.12 16 10 N -0.70 -13.67 5.24 -466.45 -2.44 -16.12 16 11 C 0.14 3.40 5.06 86.38 0.44 3.84 16 12 C -0.08 -2.10 2.19 -10.77 -0.02 -2.12 16 13 C -0.12 -3.21 5.25 30.67 0.16 -3.05 16 14 C 0.14 5.18 6.52 86.36 0.56 5.75 16 15 N -0.61 -29.58 2.99 -699.09 -2.09 -31.67 16 16 C -0.26 -14.17 9.58 84.03 0.81 -13.36 16 17 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 18 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 19 N -0.93 -54.83 11.19 21.65 0.24 -54.59 16 20 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 C 0.18 8.28 5.30 86.36 0.46 8.74 16 25 C -0.12 -4.39 5.36 30.67 0.16 -4.23 16 26 H 0.22 -1.25 8.06 -2.91 -0.02 -1.28 16 27 H 0.18 0.25 6.88 -2.91 -0.02 0.23 16 28 H 0.42 5.17 6.06 -92.70 -0.56 4.61 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.77 7.15 -2.38 -0.02 1.75 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 36 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 38 H 0.05 2.63 6.06 -2.39 -0.01 2.61 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.49 349.72 3.09 -75.40 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 0.52 Total: 1.37 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.87 Total: 12.17 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.94 Total: -116.20 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.06 Total: -20.12 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.31 Total: 0.63 kcal Total: -78.49 3.09 -75.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906798433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.775 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds