Wall clock time and date at job start Tue Mar 31 2020 12:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38915 * 120.74426 * 2 1 4 4 C 1.38023 * 119.34223 * 180.27295 * 3 2 1 5 5 N 1.31957 * 120.86133 * 359.70747 * 4 3 2 6 6 C 1.32461 * 121.61875 * 0.02562 * 5 4 3 7 7 S 1.76195 * 119.71595 * 180.02562 * 6 5 4 8 8 C 1.81394 * 103.00090 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47468 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99912 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47165 * 90.00073 * 12 11 9 14 14 H 1.07999 * 119.99575 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00033 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00134 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99993 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47313 * 119.99678 * 17 15 13 20 20 H 1.48506 * 109.47011 * 239.99861 * 17 15 13 21 21 C 1.46497 * 120.00216 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47468 * 89.99655 * 21 11 9 23 23 C 1.47193 * 109.47309 * 180.02562 * 22 21 11 24 24 N 8.92012 * 168.18643 * 50.53834 * 2 1 3 25 25 C 1.38266 * 120.74613 * 179.73092 * 2 1 3 26 26 H 1.09002 * 109.46786 * 270.26438 * 1 2 3 27 27 H 1.08998 * 109.47348 * 30.26755 * 1 2 3 28 28 H 1.09001 * 109.46656 * 150.26666 * 1 2 3 29 29 H 1.08005 * 120.32999 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.57289 * 179.72149 * 4 3 2 31 31 H 1.09004 * 109.47456 * 300.00075 * 8 7 6 32 32 H 1.09003 * 109.46941 * 59.99853 * 8 7 6 33 33 H 1.09003 * 109.47317 * 210.00143 * 12 11 9 34 34 H 1.09000 * 109.46925 * 330.00683 * 12 11 9 35 35 H 0.97003 * 120.00171 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47275 * 209.99679 * 21 11 9 37 37 H 1.09005 * 109.47257 * 329.99350 * 21 11 9 38 38 H 1.08998 * 109.46892 * 300.00259 * 22 21 11 39 39 H 1.09001 * 109.46689 * 59.99778 * 22 21 11 40 40 H 1.08002 * 120.45555 * 0.02843 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1939 0.0000 4 6 3.5970 1.1601 -0.0057 5 7 4.2459 0.0112 -0.0054 6 6 3.6054 -1.1482 -0.0001 7 16 4.5224 -2.6527 0.0007 8 6 6.2439 -2.0813 -0.0075 9 6 7.1684 -3.2715 -0.0069 10 8 6.7108 -4.3947 -0.0020 11 7 8.5035 -3.0877 -0.0130 12 6 9.4021 -4.2448 -0.0130 13 6 9.7045 -4.6460 -1.4338 14 1 9.2709 -4.0940 -2.2546 15 6 10.5345 -5.7177 -1.6858 16 7 11.0620 -6.3902 -0.6862 17 14 10.9098 -6.2145 -3.4469 18 1 10.1979 -5.3050 -4.3802 19 1 12.3726 -6.1237 -3.6859 20 1 10.4567 -7.6103 -3.6747 21 6 9.0562 -1.7311 -0.0195 22 6 9.2545 -1.2541 1.4207 23 6 9.8092 0.1093 1.4141 24 7 10.2382 1.1607 1.4099 25 6 2.2139 -1.1883 0.0056 26 1 -0.3633 0.0047 1.0277 27 1 -0.3634 0.8875 -0.5180 28 1 -0.3633 -0.8924 -0.5097 29 1 1.6948 2.1392 0.0004 30 1 4.1528 2.0862 -0.0103 31 1 6.4236 -1.4817 -0.8999 32 1 6.4303 -1.4766 0.8801 33 1 10.3300 -3.9843 0.4962 34 1 8.9241 -5.0760 0.5053 35 1 11.6463 -7.1439 -0.8635 36 1 10.0154 -1.7320 -0.5372 37 1 8.3670 -1.0604 -0.5328 38 1 8.2953 -1.2532 1.9384 39 1 9.9437 -1.9248 1.9338 40 1 1.6936 -2.1347 0.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918751602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:49 Heat of formation + Delta-G solvation = 1.493660 kcal Electronic energy + Delta-G solvation = -23060.653399 eV Core-core repulsion = 19579.866404 eV Total energy + Delta-G solvation = -3480.786996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95548 -40.78832 -38.03647 -36.75788 -34.94660 -34.86057 -32.25676 -32.19382 -31.44702 -28.82932 -28.52017 -25.36582 -24.92359 -24.36841 -23.19447 -20.26967 -18.91877 -18.49550 -18.28544 -18.04030 -17.50831 -17.06381 -16.82783 -16.47175 -16.13757 -15.78015 -15.56917 -15.35990 -14.94631 -14.61430 -14.39981 -14.32969 -13.89217 -13.66559 -13.60036 -13.56890 -13.49235 -13.37518 -13.18759 -12.93830 -12.73133 -12.57398 -12.41465 -12.18304 -11.92133 -11.66183 -11.41968 -10.81048 -10.79101 -10.59178 -10.54442 -10.43825 -9.56745 -8.57950 -8.18677 -6.30508 0.05131 0.29430 0.31230 1.22076 1.39478 1.42330 1.52497 1.59841 1.77942 1.82794 2.24525 2.44154 2.73464 3.04884 3.14023 3.55253 3.66952 3.84663 3.98746 4.00922 4.09977 4.11542 4.18614 4.31736 4.34334 4.54015 4.69601 4.79483 4.81966 4.83197 4.95394 5.01990 5.06830 5.21373 5.32243 5.40058 5.57274 5.73875 5.83520 6.11248 6.56487 6.61379 6.78832 6.81317 7.24487 7.42102 8.88497 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.003298 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.882891 B = 8488.166003 C = 9988.926728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.028 4.028 3 C -0.179 4.179 4 C 0.105 3.895 5 N -0.518 5.518 6 C 0.097 3.903 7 S -0.043 6.043 8 C -0.115 4.115 9 C 0.519 3.481 10 O -0.570 6.570 11 N -0.588 5.588 12 C 0.260 3.740 13 C -0.540 4.540 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.284 1.284 21 C 0.111 3.889 22 C -0.038 4.038 23 C 0.246 3.754 24 N -0.486 5.486 25 C -0.166 4.166 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.041 0.959 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.535 16.800 3.317 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.038 4.038 3 C -0.202 4.202 4 C -0.055 4.055 5 N -0.232 5.232 6 C -0.151 4.151 7 S 0.198 5.802 8 C -0.266 4.266 9 C 0.306 3.694 10 O -0.450 6.450 11 N -0.319 5.319 12 C 0.139 3.861 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.211 1.211 21 C -0.013 4.013 22 C -0.079 4.079 23 C -0.072 4.072 24 N -0.164 5.164 25 C -0.193 4.193 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.345 16.415 3.354 24.115 hybrid contribution 0.134 0.083 -0.826 0.841 sum -17.211 16.498 2.528 23.975 Atomic orbital electron populations 1.20914 0.87632 1.04524 1.04014 1.20639 0.98368 0.91985 0.92780 1.22337 0.95112 0.99777 1.02955 1.23220 0.93079 0.95835 0.93332 1.68067 1.40801 0.98163 1.16205 1.23405 0.94702 0.96841 1.00119 1.86464 0.99311 1.03194 1.91253 1.23573 0.93482 0.99801 1.09743 1.20135 0.83229 0.89490 0.76536 1.90714 1.76089 1.26986 1.51201 1.47971 1.04887 1.08056 1.70981 1.18900 0.88073 0.83232 0.95899 1.21759 1.28201 1.14510 0.93439 0.92860 1.25699 0.95792 0.96043 1.01145 1.70023 1.32957 1.20933 1.32544 0.85515 0.78108 0.77939 0.80146 1.19324 1.19814 1.21058 1.21575 1.02129 0.82203 0.95417 1.19807 1.04152 0.84178 0.99775 1.29056 0.91932 0.94338 0.91855 1.81221 1.11252 1.14035 1.09867 1.21709 0.92320 1.00523 1.04710 0.89223 0.89161 0.90520 0.81561 0.80212 0.85399 0.84205 0.94149 0.97398 0.92521 0.89128 0.87958 0.85078 0.85703 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.06 71.24 0.72 -0.20 16 2 C -0.03 -0.42 5.91 -19.70 -0.12 -0.54 16 3 C -0.18 -2.37 9.81 22.38 0.22 -2.15 16 4 C 0.10 1.77 11.17 84.62 0.95 2.72 16 5 N -0.52 -12.04 9.43 -192.22 -1.81 -13.85 16 6 C 0.10 2.41 7.00 84.83 0.59 3.01 16 7 S -0.04 -1.28 21.05 -56.49 -1.19 -2.47 16 8 C -0.11 -3.19 4.24 71.24 0.30 -2.89 16 9 C 0.52 19.53 7.69 87.66 0.67 20.21 16 10 O -0.57 -27.46 15.44 -3.05 -0.05 -27.51 16 11 N -0.59 -21.45 2.46 -826.14 -2.03 -23.48 16 12 C 0.26 12.50 5.16 85.63 0.44 12.94 16 13 C -0.54 -29.18 9.39 25.60 0.24 -28.94 16 14 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 17 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 C 0.11 2.82 5.17 86.38 0.45 3.26 16 22 C -0.04 -0.73 6.03 28.79 0.17 -0.55 16 23 C 0.25 5.56 15.43 89.45 1.38 6.94 16 24 N -0.49 -13.77 18.53 20.00 0.37 -13.40 16 25 C -0.17 -3.38 9.54 22.51 0.21 -3.17 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 28 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.13 3.24 7.40 -2.39 -0.02 3.22 16 32 H 0.14 3.08 7.19 -2.39 -0.02 3.07 16 33 H 0.04 1.90 8.07 -2.39 -0.02 1.89 16 34 H 0.01 0.44 7.42 -2.39 -0.02 0.43 16 35 H 0.27 14.53 8.31 -92.71 -0.77 13.75 16 36 H 0.09 2.45 8.07 -2.39 -0.02 2.44 16 37 H 0.10 2.11 6.44 -2.38 -0.02 2.09 16 38 H 0.13 1.94 7.22 -2.39 -0.02 1.92 16 39 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -75.39 367.71 5.35 -70.03 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.06 Total: 6.25 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.69 Total: 11.79 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.19 Total: -103.92 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -1.19 Total: -2.47 kcal Total: -75.39 5.35 -70.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918751602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.527 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds