Wall clock time and date at job start Tue Mar 31 2020 12:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.52997 * 109.47218 * 120.00607 * 2 1 3 5 5 C 1.50700 * 109.47527 * 64.99332 * 4 2 1 6 6 C 1.33814 * 124.51735 * 89.99725 * 5 4 2 7 7 C 1.37477 * 115.09925 * 179.97438 * 6 5 4 8 8 C 1.36659 * 113.29610 * 0.02562 * 7 6 5 9 9 C 1.46568 * 125.46036 * 180.02562 * 8 7 6 10 10 O 1.21724 * 120.00180 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99700 * 180.02562 * 9 8 7 12 12 C 1.40540 * 119.99882 * 180.02562 * 11 9 8 13 13 C 1.40665 * 126.08241 * 0.02562 * 12 11 9 14 14 N 1.30904 * 108.39147 * 179.97438 * 13 12 11 15 15 N 1.40078 * 108.40781 * 0.02562 * 14 13 12 16 16 C 1.37314 * 126.06970 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00123 * 180.02562 * 16 15 14 18 18 C 1.38992 * 119.99909 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99760 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47054 * 59.99784 * 20 18 16 22 22 H 1.48500 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47250 * 300.00105 * 20 18 16 24 24 C 1.35690 * 126.08863 * 179.97438 * 12 11 9 25 25 S 1.70616 * 124.52419 * 270.27670 * 5 4 2 26 26 H 1.08998 * 109.47643 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46913 * 299.99907 * 1 2 3 28 28 H 1.08999 * 109.47330 * 59.99267 * 1 2 3 29 29 H 1.09010 * 109.46552 * 240.00043 * 2 1 3 30 30 H 1.09005 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47461 * 299.99811 * 3 2 1 32 32 H 1.08998 * 109.47097 * 60.00205 * 3 2 1 33 33 H 1.09004 * 109.46731 * 304.99413 * 4 2 1 34 34 H 1.08996 * 109.47038 * 184.99652 * 4 2 1 35 35 H 1.07998 * 122.45029 * 359.97438 * 6 5 4 36 36 H 1.07997 * 123.35556 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00338 * 359.97438 * 11 9 8 38 38 H 1.08005 * 125.80678 * 359.71000 * 13 12 11 39 39 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.08005 * 126.24092 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6412 -2.1734 1.1888 6 6 2.3826 -3.1410 0.6369 7 6 1.8318 -4.3995 0.6895 8 6 0.6115 -4.4301 1.3039 9 6 -0.2093 -5.6276 1.5053 10 8 0.1848 -6.7092 1.1098 11 7 -1.4010 -5.5309 2.1274 12 6 -2.1878 -6.6792 2.3210 13 6 -1.8582 -7.9866 1.9201 14 7 -2.8338 -8.7850 2.2726 15 7 -3.8213 -8.0224 2.9095 16 6 -5.0029 -8.4968 3.4237 17 1 -5.6972 -7.8180 3.8965 18 6 -5.3053 -9.8506 3.3357 19 7 -4.4614 -10.6756 2.7604 20 14 -6.9129 -10.4958 4.0345 21 1 -8.0517 -9.8288 3.3537 22 1 -6.9947 -11.9623 3.8155 23 1 -6.9701 -10.2094 5.4905 24 6 -3.4001 -6.7242 2.9288 25 16 0.1813 -2.8018 1.8090 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6445 1.2950 35 1 3.3434 -2.9475 0.1833 36 1 2.3153 -5.2767 0.2855 37 1 -1.7152 -4.6689 2.4422 38 1 -0.9558 -8.2809 1.4048 39 1 -4.6726 -11.6204 2.6986 40 1 -3.9346 -5.8857 3.3504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931190633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:57 Heat of formation + Delta-G solvation = 63.774500 kcal Electronic energy + Delta-G solvation = -22973.797152 eV Core-core repulsion = 19495.710857 eV Total energy + Delta-G solvation = -3478.086296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93279 -38.88366 -38.08053 -36.13013 -34.21740 -33.16834 -30.91608 -30.20109 -28.17144 -27.50589 -26.71928 -24.82874 -23.71903 -21.74483 -20.84857 -20.61341 -19.48875 -18.84327 -17.99412 -17.09064 -16.18496 -15.52384 -15.44683 -15.05064 -14.93577 -14.70988 -14.48395 -13.98685 -13.81938 -13.36494 -13.23347 -12.94117 -12.73325 -12.60410 -12.45749 -12.29086 -11.96978 -11.67495 -11.45326 -11.31676 -11.24225 -11.18661 -11.04226 -10.95961 -10.92101 -10.55752 -10.19383 -9.34034 -9.17212 -8.81542 -8.68865 -8.59767 -8.05823 -6.70439 -6.55511 -4.22370 0.51795 1.40979 1.83747 2.39541 2.96321 3.04985 3.09284 3.33018 3.56027 3.76813 3.88407 4.36060 4.45196 4.51206 4.56262 4.74878 4.94325 5.02438 5.04954 5.19315 5.24971 5.31605 5.32830 5.42619 5.53043 5.56309 5.62058 5.79777 5.91268 5.96514 6.01888 6.12147 6.24769 6.34064 6.46321 6.89199 6.95029 7.09578 7.22993 7.85450 8.14122 8.26098 8.61109 8.80914 9.37483 9.66541 10.40375 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.032416 B = 0.002384 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.554339 B =11743.759425 C =12397.064485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.046 4.046 5 C -0.198 4.198 6 C -0.149 4.149 7 C -0.063 4.063 8 C -0.246 4.246 9 C 0.570 3.430 10 O -0.525 6.525 11 N -0.617 5.617 12 C -0.060 4.060 13 C -0.030 4.030 14 N -0.260 5.260 15 N -0.141 5.141 16 C -0.322 4.322 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.769 5.769 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.083 4.083 25 S 0.192 5.808 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.393 0.607 38 H 0.177 0.823 39 H 0.276 0.724 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 21.508 -2.575 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.085 4.085 5 C -0.318 4.318 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.367 4.367 9 C 0.356 3.644 10 O -0.403 6.403 11 N -0.258 5.258 12 C -0.166 4.166 13 C -0.206 4.206 14 N -0.091 5.091 15 N 0.092 4.908 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.172 4.172 19 N -0.395 5.395 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.234 4.234 25 S 0.460 5.540 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.226 0.774 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.562 19.892 -2.159 21.764 hybrid contribution 0.740 0.500 -0.266 0.932 sum 9.301 20.392 -2.425 22.544 Atomic orbital electron populations 1.22005 0.94915 1.02614 1.01949 1.21134 0.96387 0.95913 0.97779 1.21839 1.00945 0.95627 1.02007 1.20287 1.01599 0.87814 0.98766 1.24115 1.00382 1.00671 1.06622 1.19918 1.02216 0.91554 1.04271 1.20719 0.93092 0.98533 0.97266 1.24747 1.01915 0.97063 1.12962 1.16777 0.80834 0.86990 0.79795 1.90723 1.71424 1.27245 1.50957 1.42357 1.17768 1.09296 1.56390 1.17230 0.95263 0.87074 1.17002 1.24129 1.00790 0.89647 1.06008 1.78265 0.97300 1.16824 1.16682 1.44551 1.12195 1.02688 1.31405 1.19834 0.93655 0.93904 1.38081 0.86616 1.25654 0.99501 0.95917 0.96099 1.70211 1.33273 1.04256 1.31809 0.85884 0.80321 0.78281 0.79597 1.19143 1.20132 1.19151 1.21246 0.97962 0.89598 1.14613 1.82950 1.17521 0.98115 1.55458 0.91941 0.92549 0.92420 0.90740 0.92613 0.92446 0.92567 0.90656 0.89911 0.84146 0.83007 0.77351 0.80644 0.91372 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.88 37.16 0.33 -0.82 16 2 C -0.09 -0.63 2.91 -90.62 -0.26 -0.89 16 3 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 4 C -0.05 -0.32 5.12 -27.88 -0.14 -0.47 16 5 C -0.20 -1.92 4.92 -35.86 -0.18 -2.09 16 6 C -0.15 -1.54 9.99 -41.41 -0.41 -1.96 16 7 C -0.06 -0.83 10.01 -40.43 -0.40 -1.24 16 8 C -0.25 -3.64 6.45 -36.80 -0.24 -3.87 16 9 C 0.57 10.91 7.75 -12.90 -0.10 10.81 16 10 O -0.52 -11.90 13.98 5.17 0.07 -11.83 16 11 N -0.62 -11.77 5.46 -11.21 -0.06 -11.83 16 12 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 13 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 14 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 15 N -0.14 -3.91 3.74 -11.41 -0.04 -3.96 16 16 C -0.32 -8.57 10.25 -14.82 -0.15 -8.73 16 17 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.63 11.81 55.50 0.66 -20.98 16 20 Si 0.94 18.98 29.55 -169.99 -5.02 13.96 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 25 S 0.19 2.09 20.51 -107.50 -2.20 -0.11 16 26 H 0.06 0.54 6.11 -51.93 -0.32 0.22 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.39 6.06 7.94 -40.82 -0.32 5.73 16 38 H 0.18 4.69 5.91 -52.48 -0.31 4.38 16 39 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.15 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -33.11 352.39 -8.39 -41.50 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.15 Total: 9.09 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.27 Total: -13.80 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.87 Total: -44.11 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.20 Total: -0.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.11 -8.39 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931190633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.275 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds