Wall clock time and date at job start Tue Mar 31 2020 12:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.52997 * 109.47218 * 120.00607 * 2 1 3 5 5 C 1.50700 * 109.47527 * 64.99332 * 4 2 1 6 6 C 1.33814 * 124.51735 * 89.99725 * 5 4 2 7 7 C 1.37477 * 115.09925 * 179.97438 * 6 5 4 8 8 C 1.36659 * 113.29610 * 0.02562 * 7 6 5 9 9 C 1.46568 * 125.46036 * 180.02562 * 8 7 6 10 10 O 1.21724 * 120.00180 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99700 * 180.02562 * 9 8 7 12 12 C 1.40540 * 119.99882 * 180.02562 * 11 9 8 13 13 C 1.40665 * 126.08241 * 0.02562 * 12 11 9 14 14 N 1.30904 * 108.39147 * 179.97438 * 13 12 11 15 15 N 1.40078 * 108.40781 * 0.02562 * 14 13 12 16 16 C 1.37314 * 126.06970 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00123 * 180.02562 * 16 15 14 18 18 C 1.38992 * 119.99909 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99760 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47054 * 59.99784 * 20 18 16 22 22 H 1.48500 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47250 * 300.00105 * 20 18 16 24 24 C 1.35690 * 126.08863 * 179.97438 * 12 11 9 25 25 S 1.70616 * 124.52419 * 270.27670 * 5 4 2 26 26 H 1.08998 * 109.47643 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46913 * 299.99907 * 1 2 3 28 28 H 1.08999 * 109.47330 * 59.99267 * 1 2 3 29 29 H 1.09010 * 109.46552 * 240.00043 * 2 1 3 30 30 H 1.09005 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47461 * 299.99811 * 3 2 1 32 32 H 1.08998 * 109.47097 * 60.00205 * 3 2 1 33 33 H 1.09004 * 109.46731 * 304.99413 * 4 2 1 34 34 H 1.08996 * 109.47038 * 184.99652 * 4 2 1 35 35 H 1.07998 * 122.45029 * 359.97438 * 6 5 4 36 36 H 1.07997 * 123.35556 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00338 * 359.97438 * 11 9 8 38 38 H 1.08005 * 125.80678 * 359.71000 * 13 12 11 39 39 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.08005 * 126.24092 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6412 -2.1734 1.1888 6 6 2.3826 -3.1410 0.6369 7 6 1.8318 -4.3995 0.6895 8 6 0.6115 -4.4301 1.3039 9 6 -0.2093 -5.6276 1.5053 10 8 0.1848 -6.7092 1.1098 11 7 -1.4010 -5.5309 2.1274 12 6 -2.1878 -6.6792 2.3210 13 6 -1.8582 -7.9866 1.9201 14 7 -2.8338 -8.7850 2.2726 15 7 -3.8213 -8.0224 2.9095 16 6 -5.0029 -8.4968 3.4237 17 1 -5.6972 -7.8180 3.8965 18 6 -5.3053 -9.8506 3.3357 19 7 -4.4614 -10.6756 2.7604 20 14 -6.9129 -10.4958 4.0345 21 1 -8.0517 -9.8288 3.3537 22 1 -6.9947 -11.9623 3.8155 23 1 -6.9701 -10.2094 5.4905 24 6 -3.4001 -6.7242 2.9288 25 16 0.1813 -2.8018 1.8090 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6445 1.2950 35 1 3.3434 -2.9475 0.1833 36 1 2.3153 -5.2767 0.2855 37 1 -1.7152 -4.6689 2.4422 38 1 -0.9558 -8.2809 1.4048 39 1 -4.6726 -11.6204 2.6986 40 1 -3.9346 -5.8857 3.3504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931190633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:56 Heat of formation + Delta-G solvation = 43.605648 kcal Electronic energy + Delta-G solvation = -22974.671739 eV Core-core repulsion = 19495.710857 eV Total energy + Delta-G solvation = -3478.960883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76200 -40.38805 -39.09393 -36.85448 -35.97766 -35.02745 -32.35848 -31.69213 -29.83801 -27.99271 -27.92713 -26.61507 -24.65955 -23.17286 -22.67026 -21.36991 -21.20643 -20.07254 -19.51025 -18.51378 -17.50829 -17.26141 -16.68896 -16.31062 -16.27516 -15.80847 -15.47553 -15.38469 -15.06896 -14.88696 -14.63258 -14.38786 -13.61898 -13.49674 -13.39696 -13.34323 -13.12955 -12.90205 -12.87714 -12.87120 -12.62971 -12.13720 -11.94723 -11.91470 -11.86423 -11.69237 -11.49874 -11.04216 -10.97623 -10.83381 -10.13349 -9.66376 -9.47269 -8.57930 -8.48145 -6.25959 -0.50761 0.45970 0.91640 1.21294 1.39717 1.42541 1.56705 1.74783 1.99344 2.04686 2.24437 2.56747 2.88643 3.07982 3.68737 3.86946 4.00022 4.04488 4.27890 4.38162 4.41660 4.46030 4.54723 4.74668 4.78926 4.85405 4.96594 4.97762 4.99467 5.04701 5.07701 5.16702 5.22527 5.25515 5.32702 5.36427 5.40949 5.47902 5.53913 5.93088 6.26348 6.58993 6.70512 7.22693 7.43308 7.63707 8.51103 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.032416 B = 0.002384 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.554339 B =11743.759425 C =12397.064485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.047 4.047 5 C -0.176 4.176 6 C -0.159 4.159 7 C -0.055 4.055 8 C -0.297 4.297 9 C 0.571 3.429 10 O -0.571 6.571 11 N -0.612 5.612 12 C -0.048 4.048 13 C -0.058 4.058 14 N -0.308 5.308 15 N -0.164 5.164 16 C -0.353 4.353 17 H 0.143 0.857 18 C -0.008 4.008 19 N -0.824 5.824 20 Si 1.022 2.978 21 H -0.252 1.252 22 H -0.278 1.278 23 H -0.252 1.252 24 C -0.080 4.080 25 S 0.234 5.766 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.413 0.587 38 H 0.167 0.833 39 H 0.277 0.723 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 25.205 -1.661 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.296 4.296 6 C -0.188 4.188 7 C -0.089 4.089 8 C -0.417 4.417 9 C 0.360 3.640 10 O -0.452 6.452 11 N -0.256 5.256 12 C -0.154 4.154 13 C -0.233 4.233 14 N -0.140 5.140 15 N 0.067 4.933 16 C -0.484 4.484 17 H 0.160 0.840 18 C -0.220 4.220 19 N -0.452 5.452 20 Si 0.840 3.160 21 H -0.176 1.176 22 H -0.203 1.203 23 H -0.176 1.176 24 C -0.230 4.230 25 S 0.503 5.497 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.249 0.751 38 H 0.184 0.816 39 H 0.087 0.913 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.317 23.663 -1.237 25.112 hybrid contribution 0.991 -0.403 -0.614 1.234 sum 9.308 23.260 -1.851 25.122 Atomic orbital electron populations 1.22048 0.95539 1.01743 1.02566 1.21114 0.95830 0.96784 0.97252 1.21810 1.01475 0.94480 1.02360 1.20474 1.02994 0.85657 0.99486 1.24606 0.99127 1.02003 1.03902 1.20071 1.03506 0.90248 1.04998 1.20921 0.92444 0.99673 0.95837 1.24347 1.02645 0.97718 1.16977 1.17425 0.80590 0.87902 0.78126 1.90690 1.72376 1.29624 1.52534 1.42261 1.17618 1.08792 1.56909 1.17306 0.95441 0.87445 1.15183 1.24151 1.00554 0.91409 1.07185 1.78161 0.98650 1.18756 1.18438 1.44860 1.12529 1.03763 1.32161 1.20629 0.93953 0.95170 1.38659 0.83952 1.26941 1.03509 0.95801 0.95737 1.70401 1.36089 1.04682 1.34000 0.84619 0.74955 0.77146 0.79273 1.17622 1.20326 1.17626 1.21970 0.97917 0.89620 1.13496 1.82749 1.17753 0.94760 1.54423 0.93443 0.91793 0.92117 0.91236 0.91779 0.92343 0.92037 0.89442 0.87944 0.81440 0.83859 0.75069 0.81629 0.91314 0.79298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.88 71.98 0.64 -1.29 16 2 C -0.09 -0.91 2.91 -10.80 -0.03 -0.95 16 3 C -0.14 -1.05 9.19 71.98 0.66 -0.39 16 4 C -0.05 -0.48 5.12 29.85 0.15 -0.33 16 5 C -0.18 -2.87 4.92 24.68 0.12 -2.74 16 6 C -0.16 -2.90 9.99 21.08 0.21 -2.69 16 7 C -0.05 -1.40 10.01 21.72 0.22 -1.18 16 8 C -0.30 -8.68 6.45 24.07 0.16 -8.52 16 9 C 0.57 22.45 7.75 86.41 0.67 23.12 16 10 O -0.57 -27.37 13.98 -4.42 -0.06 -27.44 16 11 N -0.61 -23.47 5.46 -307.57 -1.68 -25.15 16 12 C -0.05 -2.31 6.90 37.75 0.26 -2.05 16 13 C -0.06 -3.30 10.85 85.42 0.93 -2.38 16 14 N -0.31 -19.10 10.40 -56.45 -0.59 -19.68 16 15 N -0.16 -9.33 3.74 -190.00 -0.71 -10.04 16 16 C -0.35 -18.88 10.25 84.02 0.86 -18.02 16 17 H 0.14 6.53 7.83 -2.91 -0.02 6.51 16 18 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 19 N -0.82 -48.22 11.81 21.66 0.26 -47.97 16 20 Si 1.02 38.78 29.55 68.60 2.03 40.81 16 21 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 22 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 24 C -0.08 -3.80 11.49 83.38 0.96 -2.84 16 25 S 0.23 4.60 20.51 -56.49 -1.16 3.44 16 26 H 0.05 0.70 6.11 -2.39 -0.01 0.69 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.41 12.25 7.94 -92.71 -0.74 11.51 16 38 H 0.17 9.58 5.91 -2.91 -0.02 9.57 16 39 H 0.28 14.92 8.31 -92.70 -0.77 14.15 16 40 H 0.19 7.07 8.06 -2.91 -0.02 7.04 16 Total: -1.00 -77.04 352.39 4.69 -72.34 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.33 Total: 33.90 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 6.27 Total: -20.22 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -2.72 Total: -102.84 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.16 Total: 3.44 kcal Total: -77.04 4.69 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931190633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.950 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds