Wall clock time and date at job start Tue Mar 31 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48498 * 109.46607 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47211 * 300.00019 * 3 2 1 6 6 H 1.48499 * 109.46679 * 60.00018 * 3 2 1 7 7 C 1.38811 * 119.99437 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99351 * 198.06080 * 7 2 1 9 9 N 1.36937 * 120.00271 * 18.06515 * 7 2 1 10 10 C 1.43460 * 118.93541 * 203.72928 * 9 7 2 11 11 C 1.53808 * 107.96583 * 273.62751 * 10 9 7 12 12 C 1.47140 * 111.83653 * 281.67761 * 11 10 9 13 13 N 1.48207 * 110.34662 * 58.29299 * 12 11 10 14 14 C 1.34778 * 119.97108 * 102.46111 * 13 12 11 15 15 O 1.21740 * 119.99894 * 5.35024 * 14 13 12 16 16 C 1.46454 * 120.00090 * 185.34834 * 14 13 12 17 17 C 1.37466 * 125.80556 * 187.26298 * 16 14 13 18 18 C 1.40653 * 107.55745 * 179.97438 * 17 16 14 19 19 S 1.76030 * 142.39864 * 180.02562 * 18 17 16 20 20 C 1.75599 * 91.31092 * 179.97438 * 19 18 17 21 21 C 1.32772 * 110.47018 * 359.78705 * 20 19 18 22 22 C 1.38246 * 108.03543 * 0.02562 * 18 17 16 23 23 N 1.37916 * 125.80863 * 7.23952 * 16 14 13 24 24 H 0.97006 * 125.67840 * 0.05524 * 23 16 14 25 25 C 1.43618 * 120.06009 * 282.73892 * 13 12 11 26 26 C 1.48852 * 118.94161 * 23.70951 * 9 7 2 27 27 H 0.96997 * 119.99833 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.76565 * 154.01429 * 10 9 7 29 29 H 1.08996 * 109.81233 * 33.26803 * 10 9 7 30 30 H 1.08993 * 109.00506 * 161.07017 * 11 10 9 31 31 H 1.09002 * 108.94103 * 42.23960 * 11 10 9 32 32 H 1.09001 * 109.32739 * 298.02483 * 12 11 10 33 33 H 1.08999 * 109.17666 * 178.46767 * 12 11 10 34 34 H 1.07999 * 126.22411 * 0.02562 * 17 16 14 35 35 H 1.07996 * 124.75964 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.15659 * 179.97438 * 21 20 19 37 37 H 1.08998 * 108.87373 * 211.19566 * 25 13 12 38 38 H 1.08998 * 108.87201 * 329.62776 * 25 13 12 39 39 H 1.08997 * 109.47668 * 260.60435 * 26 9 7 40 40 H 1.08998 * 109.48278 * 20.63437 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0503 -1.2251 0.2905 9 7 1.3761 -2.3590 -0.3667 10 6 1.8898 -3.6123 0.1060 11 6 2.9823 -4.0765 -0.8721 12 6 2.4096 -4.6641 -2.0934 13 7 1.5319 -3.6832 -2.7746 14 6 1.9751 -3.0265 -3.8650 15 8 3.0566 -3.3085 -4.3476 16 6 1.1557 -1.9738 -4.4692 17 6 1.4209 -1.3282 -5.6535 18 6 0.3906 -0.3951 -5.8681 19 16 -0.1649 0.8334 -6.9999 20 6 -1.5661 1.1789 -5.9996 21 6 -1.5692 0.4043 -4.9212 22 6 -0.4933 -0.4823 -4.8088 23 7 -0.0137 -1.4618 -3.9471 24 1 -0.4313 -1.7386 -3.1164 25 6 0.2117 -3.4275 -2.2705 26 6 0.1758 -2.2755 -1.2431 27 1 -0.4850 0.8400 -0.0004 28 1 1.0881 -4.3500 0.1401 29 1 2.3160 -3.4851 1.1011 30 1 3.6070 -4.8211 -0.3790 31 1 3.5993 -3.2205 -1.1455 32 1 1.8274 -5.5472 -1.8302 33 1 3.2182 -4.9522 -2.7653 34 1 2.2663 -1.5058 -6.3018 35 1 -2.3216 1.9151 -6.2312 36 1 -2.3483 0.4603 -4.1754 37 1 -0.4407 -3.1701 -3.1049 38 1 -0.1663 -4.3332 -1.7963 39 1 -0.7249 -2.3570 -0.6346 40 1 0.1747 -1.3204 -1.7681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989410436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:27 Heat of formation + Delta-G solvation = 101.354310 kcal Electronic energy + Delta-G solvation = -25814.185149 eV Core-core repulsion = 22337.728436 eV Total energy + Delta-G solvation = -3476.456713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.37655 -39.32647 -37.18932 -35.21451 -34.41727 -33.06186 -31.21824 -30.42529 -28.43819 -27.61112 -25.63491 -23.90834 -23.41353 -22.71828 -21.01880 -20.16070 -19.92116 -18.86883 -17.74234 -16.92487 -16.19212 -16.10285 -15.48329 -15.16726 -14.73235 -14.37392 -14.16812 -13.95055 -13.71175 -13.43697 -13.17858 -13.08058 -12.74588 -12.49510 -12.39664 -11.97881 -11.65257 -11.55579 -11.32154 -11.12335 -10.85547 -10.68759 -10.64590 -10.42295 -10.33713 -10.02789 -9.87385 -9.71663 -9.45630 -8.61669 -8.31973 -7.80698 -7.43215 -6.89950 -5.96147 -3.34713 1.01391 1.74477 2.19449 2.25847 3.00086 3.09054 3.31197 3.40734 3.43029 3.46482 3.69513 4.39827 4.78508 4.91959 5.00027 5.20475 5.21424 5.39677 5.45520 5.56404 5.58073 5.67591 5.77507 5.80281 5.86223 5.94363 6.08303 6.16671 6.20162 6.30532 6.39114 6.63603 6.69574 6.71567 6.81856 6.93983 7.04812 7.12517 7.58795 7.69025 7.74035 8.26160 8.43597 9.03217 9.71323 10.14944 11.12922 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.006354 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.923208 B = 4405.584766 C = 5820.598426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.005 3.995 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.161 3.839 11 C -0.173 4.173 12 C 0.131 3.869 13 N -0.581 5.581 14 C 0.592 3.408 15 O -0.538 6.538 16 C 0.021 3.979 17 C -0.085 4.085 18 C -0.216 4.216 19 S 0.106 5.894 20 C -0.196 4.196 21 C -0.103 4.103 22 C 0.057 3.943 23 N -0.535 5.535 24 H 0.434 0.566 25 C 0.054 3.946 26 C 0.142 3.858 27 H 0.254 0.746 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -4.442 -8.952 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.193 4.193 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.307 5.307 10 C 0.033 3.967 11 C -0.214 4.214 12 C 0.010 3.990 13 N -0.312 5.312 14 C 0.381 3.619 15 O -0.416 6.416 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.336 4.336 19 S 0.365 5.635 20 C -0.331 4.331 21 C -0.136 4.136 22 C -0.062 4.062 23 N -0.149 5.149 24 H 0.288 0.712 25 C -0.073 4.073 26 C 0.016 3.984 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.577 -4.014 -10.304 11.622 hybrid contribution -0.412 0.480 1.934 2.035 sum -3.989 -3.534 -8.370 9.922 Atomic orbital electron populations 1.70009 1.05139 1.25556 1.54729 1.24902 0.95320 0.98337 1.00731 0.86304 0.79694 0.84030 0.77386 1.20180 1.21350 1.21623 1.19231 0.93460 0.85160 1.40380 0.91361 1.43519 1.31317 1.01832 1.54004 1.20329 0.93585 0.87871 0.94897 1.21902 1.01081 1.01155 0.97223 1.20622 0.94060 0.89781 0.94575 1.47248 1.15635 1.41272 1.27026 1.16943 0.84961 0.80040 0.79969 1.90789 1.21315 1.66217 1.63301 1.20290 0.90339 1.01823 0.97018 1.20279 0.98765 0.96215 0.96376 1.22604 1.02832 1.06934 1.01269 1.83638 1.20122 1.35636 1.24134 1.25104 1.03180 1.05680 0.99179 1.18965 0.98299 0.96580 0.99793 1.18472 0.97876 0.96986 0.92859 1.43955 1.20002 1.29724 1.21187 0.71203 1.22580 0.83577 1.02551 0.98551 1.22157 0.90914 0.94807 0.90542 0.93625 0.94693 0.93172 0.92133 0.91122 0.91708 0.89880 0.83042 0.81342 0.84115 0.91398 0.90478 0.93160 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.53 11.04 55.49 0.61 -23.92 16 2 C 0.01 0.13 4.86 -17.43 -0.08 0.05 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.63 9.27 -15.06 -0.14 -6.77 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -13.34 2.54 -172.30 -0.44 -13.78 16 10 C 0.16 3.07 5.63 -5.23 -0.03 3.04 16 11 C -0.17 -2.95 5.64 -29.13 -0.16 -3.12 16 12 C 0.13 2.08 5.73 -5.92 -0.03 2.05 16 13 N -0.58 -10.35 2.47 -178.60 -0.44 -10.80 16 14 C 0.59 11.73 7.62 -12.95 -0.10 11.63 16 15 O -0.54 -11.66 16.29 5.15 0.08 -11.58 16 16 C 0.02 0.41 6.59 -82.10 -0.54 -0.14 16 17 C -0.09 -1.54 10.61 -38.95 -0.41 -1.95 16 18 C -0.22 -3.70 7.26 -38.67 -0.28 -3.98 16 19 S 0.11 1.45 23.31 -107.50 -2.51 -1.06 16 20 C -0.20 -2.46 11.13 28.86 0.32 -2.14 16 21 C -0.10 -1.51 10.16 -40.85 -0.42 -1.92 16 22 C 0.06 1.00 7.67 -84.00 -0.64 0.35 16 23 N -0.53 -9.69 4.50 -7.34 -0.03 -9.72 16 24 H 0.43 7.71 3.06 -40.82 -0.13 7.58 16 25 C 0.05 0.90 4.69 -4.84 -0.02 0.87 16 26 C 0.14 2.97 4.45 -2.01 -0.01 2.96 16 27 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 28 H 0.03 0.60 7.58 -51.93 -0.39 0.20 16 29 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 32 H 0.06 0.85 8.06 -51.93 -0.42 0.44 16 33 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 34 H 0.15 2.50 8.06 -52.49 -0.42 2.07 16 35 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.07 1.05 5.02 -51.93 -0.26 0.79 16 38 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 39 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 40 H 0.08 1.94 4.31 -51.93 -0.22 1.72 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -30.35 327.68 -10.04 -40.39 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.67 Total: 7.75 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.56 Total: 0.94 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.30 Total: -58.22 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.51 Total: -1.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.35 -10.04 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989410436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.747 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds