Wall clock time and date at job start Tue Mar 31 2020 12:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48505 * 109.46735 * 269.99907 * 3 2 1 5 5 H 1.48497 * 109.47311 * 30.00107 * 3 2 1 6 6 H 1.48495 * 109.47191 * 150.00133 * 3 2 1 7 7 C 1.38809 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00175 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45862 * 154.99902 * 10 9 7 12 12 C 1.53191 * 109.31104 * 181.37174 * 11 10 9 13 13 N 1.46924 * 108.77921 * 305.36732 * 12 11 10 14 14 C 1.34775 * 120.62884 * 233.58562 * 13 12 11 15 15 O 1.21721 * 120.00308 * 6.80301 * 14 13 12 16 16 C 1.46494 * 119.99420 * 186.79974 * 14 13 12 17 17 C 1.36121 * 125.70752 * 204.33897 * 16 14 13 18 18 C 1.42226 * 107.62258 * 180.02562 * 17 16 14 19 19 C 1.45600 * 140.77764 * 180.02562 * 18 17 16 20 20 C 1.31805 * 114.63210 * 179.97438 * 19 18 17 21 21 S 1.75359 * 111.24820 * 0.02562 * 20 19 18 22 22 C 1.38171 * 106.99741 * 0.02562 * 18 17 16 23 23 N 1.37461 * 108.16826 * 0.02562 * 22 18 17 24 24 H 0.96999 * 125.68050 * 180.02562 * 23 22 18 25 25 C 1.46926 * 118.73587 * 53.85906 * 13 12 11 26 26 C 1.53034 * 109.44784 * 275.06292 * 10 9 7 27 27 H 0.97001 * 119.99847 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99586 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.45733 * 35.03006 * 10 9 7 30 30 H 1.09000 * 109.49647 * 61.41869 * 11 10 9 31 31 H 1.09004 * 109.52656 * 301.34176 * 11 10 9 32 32 H 1.08998 * 109.58410 * 185.57351 * 12 11 10 33 33 H 1.08998 * 109.70232 * 65.22716 * 12 11 10 34 34 H 1.07995 * 126.18935 * 0.26277 * 17 16 14 35 35 H 1.07998 * 122.68009 * 359.97181 * 19 18 17 36 36 H 1.08005 * 124.37722 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.58694 * 65.92854 * 25 13 12 38 38 H 1.08997 * 109.58684 * 186.35366 * 25 13 12 39 39 H 1.09005 * 109.50266 * 298.56938 * 26 10 9 40 40 H 1.09002 * 109.50196 * 58.67411 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1808 -4.7519 0.6126 12 6 1.9622 -6.0692 0.6424 13 7 2.4405 -6.3662 -0.7147 14 6 2.1719 -7.5537 -1.2929 15 8 1.4256 -8.3431 -0.7438 16 6 2.7781 -7.8942 -2.5823 17 6 2.2791 -8.7826 -3.4849 18 6 3.1695 -8.8162 -4.5935 19 6 3.3382 -9.4661 -5.8854 20 6 4.4177 -9.1005 -6.5475 21 16 5.3439 -7.9143 -5.6474 22 6 4.1937 -7.9312 -4.3159 23 7 3.9526 -7.3692 -3.0848 24 1 4.5132 -6.7122 -2.6433 25 6 3.2223 -5.3464 -1.4272 26 6 2.4220 -4.0351 -1.4359 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.9689 -3.5502 0.5908 30 1 0.2812 -4.8761 0.0098 31 1 0.9022 -4.4712 1.6284 32 1 1.3103 -6.8731 0.9842 33 1 2.8129 -5.9767 1.3175 34 1 1.3694 -9.3552 -3.3801 35 1 2.6351 -10.1898 -6.2704 36 1 4.6959 -9.4821 -7.5188 37 1 4.1738 -5.1936 -0.9179 38 1 3.4020 -5.6733 -2.4513 39 1 1.5107 -4.1661 -2.0196 40 1 3.0273 -3.2438 -1.8782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996863607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:34 Heat of formation + Delta-G solvation = 64.561697 kcal Electronic energy + Delta-G solvation = -23963.766503 eV Core-core repulsion = 20485.714343 eV Total energy + Delta-G solvation = -3478.052160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.70974 -39.63240 -37.45207 -35.66991 -34.56935 -32.17706 -31.14321 -30.69036 -29.49693 -28.46389 -25.28743 -23.57329 -23.40475 -22.91305 -21.79323 -20.41556 -19.95878 -19.54781 -18.36775 -17.17098 -16.85535 -16.02276 -15.66989 -15.30838 -14.89315 -14.82960 -14.51351 -14.16313 -13.82143 -13.74551 -13.56897 -13.40328 -13.18681 -12.93110 -12.50245 -12.13859 -12.00832 -11.86337 -11.58821 -11.08650 -11.06290 -10.95551 -10.88027 -10.58282 -10.30122 -10.12417 -9.91504 -9.75576 -9.69438 -8.98661 -8.71679 -8.47909 -7.89050 -7.05376 -5.83799 -3.13730 0.83173 1.10071 1.23190 1.74568 2.62455 2.77449 2.93322 3.29266 3.37857 3.42956 3.45053 4.24142 4.51413 4.55793 4.77041 4.78734 5.14886 5.16990 5.20799 5.24219 5.31699 5.41215 5.47536 5.50062 5.61747 5.80777 5.85156 5.86941 5.97712 6.10935 6.18408 6.25614 6.30310 6.39979 6.46962 6.52108 6.77197 6.89550 6.93577 7.29276 7.61345 8.00137 8.34109 9.45468 10.02152 10.36793 11.38575 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003016 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.149876 B = 9282.444546 C =10474.300406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.180 3.820 11 C -0.140 4.140 12 C 0.117 3.883 13 N -0.603 5.603 14 C 0.587 3.413 15 O -0.529 6.529 16 C 0.001 3.999 17 C -0.074 4.074 18 C -0.161 4.161 19 C -0.069 4.069 20 C -0.223 4.223 21 S 0.131 5.869 22 C -0.014 4.014 23 N -0.526 5.526 24 H 0.425 0.575 25 C 0.087 3.913 26 C -0.148 4.148 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.297 -18.905 -9.838 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.005 4.005 13 N -0.335 5.335 14 C 0.375 3.625 15 O -0.406 6.406 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.174 4.174 19 C -0.100 4.100 20 C -0.357 4.357 21 S 0.385 5.615 22 C -0.243 4.243 23 N -0.134 5.134 24 H 0.269 0.731 25 C -0.037 4.037 26 C -0.189 4.189 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.187 0.813 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.369 -18.285 -9.653 23.596 hybrid contribution -0.809 0.711 0.260 1.107 sum 10.560 -17.575 -9.394 22.553 Atomic orbital electron populations 1.69663 1.05139 1.25779 1.57278 1.24761 0.95509 0.97751 1.02786 0.86204 0.78656 0.83862 0.77527 1.21698 1.21725 1.20749 1.19213 0.90931 0.84072 1.43196 0.91194 1.42430 1.05846 0.99630 1.88437 1.20155 0.94538 0.86242 0.92166 1.22214 0.99291 0.93879 1.02465 1.21692 0.98953 0.98496 0.81354 1.48090 1.53953 1.14268 1.17219 1.17028 0.81013 0.81733 0.82758 1.90845 1.36707 1.49919 1.63107 1.20009 0.90660 1.03064 0.97415 1.20706 0.99913 0.98678 0.90920 1.19378 0.97774 1.02922 0.97320 1.20334 0.97756 1.00005 0.91900 1.24864 1.00612 1.05200 1.05030 1.83951 1.24196 1.45847 1.07552 1.23638 1.03382 1.03837 0.93438 1.42252 1.21012 1.36226 1.13904 0.73092 1.22400 0.95117 0.89852 0.96355 1.22751 1.00046 0.93950 1.02185 0.93413 0.78177 0.93364 0.91606 0.90277 0.88964 0.91239 0.82663 0.83766 0.81286 0.91082 0.90228 0.91868 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -17.36 5.12 -53.39 -0.27 -17.64 16 10 C 0.18 3.30 2.73 -67.89 -0.19 3.11 16 11 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 12 C 0.12 1.60 6.44 -3.71 -0.02 1.57 16 13 N -0.60 -8.19 2.97 -174.11 -0.52 -8.71 16 14 C 0.59 8.64 7.61 -12.94 -0.10 8.54 16 15 O -0.53 -9.21 16.37 5.17 0.08 -9.12 16 16 C 0.00 0.02 6.29 -82.47 -0.52 -0.50 16 17 C -0.07 -0.94 10.67 -38.81 -0.41 -1.35 16 18 C -0.16 -1.87 6.80 -105.46 -0.72 -2.59 16 19 C -0.07 -0.63 10.42 -38.54 -0.40 -1.03 16 20 C -0.22 -1.75 11.03 28.84 0.32 -1.43 16 21 S 0.13 1.14 23.24 -107.50 -2.50 -1.36 16 22 C -0.01 -0.16 8.41 -15.05 -0.13 -0.29 16 23 N -0.53 -5.79 4.81 -7.94 -0.04 -5.83 16 24 H 0.43 3.84 6.40 -40.82 -0.26 3.58 16 25 C 0.09 1.07 5.31 -3.48 -0.02 1.05 16 26 C -0.15 -2.40 5.67 -26.39 -0.15 -2.55 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.38 9.99 7.80 -40.82 -0.32 9.68 16 29 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.92 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.89 4.22 -51.93 -0.22 0.67 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -31.93 341.46 -10.06 -41.99 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.93 Total: 10.50 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.73 Total: -4.89 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.10 Total: -59.08 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -10.06 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996863607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.552 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds