Wall clock time and date at job start Tue Mar 31 2020 12:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48505 * 109.46735 * 269.99907 * 3 2 1 5 5 H 1.48497 * 109.47311 * 30.00107 * 3 2 1 6 6 H 1.48495 * 109.47191 * 150.00133 * 3 2 1 7 7 C 1.38809 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00175 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45862 * 154.99902 * 10 9 7 12 12 C 1.53191 * 109.31104 * 181.37174 * 11 10 9 13 13 N 1.46924 * 108.77921 * 305.36732 * 12 11 10 14 14 C 1.34775 * 120.62884 * 233.58562 * 13 12 11 15 15 O 1.21721 * 120.00308 * 6.80301 * 14 13 12 16 16 C 1.46494 * 119.99420 * 186.79974 * 14 13 12 17 17 C 1.36121 * 125.70752 * 204.33897 * 16 14 13 18 18 C 1.42226 * 107.62258 * 180.02562 * 17 16 14 19 19 C 1.45600 * 140.77764 * 180.02562 * 18 17 16 20 20 C 1.31805 * 114.63210 * 179.97438 * 19 18 17 21 21 S 1.75359 * 111.24820 * 0.02562 * 20 19 18 22 22 C 1.38171 * 106.99741 * 0.02562 * 18 17 16 23 23 N 1.37461 * 108.16826 * 0.02562 * 22 18 17 24 24 H 0.96999 * 125.68050 * 180.02562 * 23 22 18 25 25 C 1.46926 * 118.73587 * 53.85906 * 13 12 11 26 26 C 1.53034 * 109.44784 * 275.06292 * 10 9 7 27 27 H 0.97001 * 119.99847 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99586 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.45733 * 35.03006 * 10 9 7 30 30 H 1.09000 * 109.49647 * 61.41869 * 11 10 9 31 31 H 1.09004 * 109.52656 * 301.34176 * 11 10 9 32 32 H 1.08998 * 109.58410 * 185.57351 * 12 11 10 33 33 H 1.08998 * 109.70232 * 65.22716 * 12 11 10 34 34 H 1.07995 * 126.18935 * 0.26277 * 17 16 14 35 35 H 1.07998 * 122.68009 * 359.97181 * 19 18 17 36 36 H 1.08005 * 124.37722 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.58694 * 65.92854 * 25 13 12 38 38 H 1.08997 * 109.58684 * 186.35366 * 25 13 12 39 39 H 1.09005 * 109.50266 * 298.56938 * 26 10 9 40 40 H 1.09002 * 109.50196 * 58.67411 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1808 -4.7519 0.6126 12 6 1.9622 -6.0692 0.6424 13 7 2.4405 -6.3662 -0.7147 14 6 2.1719 -7.5537 -1.2929 15 8 1.4256 -8.3431 -0.7438 16 6 2.7781 -7.8942 -2.5823 17 6 2.2791 -8.7826 -3.4849 18 6 3.1695 -8.8162 -4.5935 19 6 3.3382 -9.4661 -5.8854 20 6 4.4177 -9.1005 -6.5475 21 16 5.3439 -7.9143 -5.6474 22 6 4.1937 -7.9312 -4.3159 23 7 3.9526 -7.3692 -3.0848 24 1 4.5132 -6.7122 -2.6433 25 6 3.2223 -5.3464 -1.4272 26 6 2.4220 -4.0351 -1.4359 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.9689 -3.5502 0.5908 30 1 0.2812 -4.8761 0.0098 31 1 0.9022 -4.4712 1.6284 32 1 1.3103 -6.8731 0.9842 33 1 2.8129 -5.9767 1.3175 34 1 1.3694 -9.3552 -3.3801 35 1 2.6351 -10.1898 -6.2704 36 1 4.6959 -9.4821 -7.5188 37 1 4.1738 -5.1936 -0.9179 38 1 3.4020 -5.6733 -2.4513 39 1 1.5107 -4.1661 -2.0196 40 1 3.0273 -3.2438 -1.8782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996863607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:33 Heat of formation + Delta-G solvation = 44.664999 kcal Electronic energy + Delta-G solvation = -23964.629289 eV Core-core repulsion = 20485.714343 eV Total energy + Delta-G solvation = -3478.914946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63094 -40.74087 -38.78808 -36.53308 -36.07797 -33.89478 -32.34839 -31.63204 -31.12121 -29.44282 -26.78901 -25.01917 -24.56353 -23.85530 -23.01563 -21.50541 -21.11293 -20.38230 -19.48293 -19.01073 -17.94265 -17.10307 -16.76854 -16.69097 -16.06243 -15.64330 -15.50004 -15.46838 -15.34761 -15.18260 -14.89084 -14.50196 -14.47468 -13.87737 -13.74574 -13.35349 -13.23396 -12.86796 -12.78949 -12.73274 -12.53751 -12.27494 -12.16835 -12.05959 -11.75349 -11.72802 -11.37058 -11.32433 -10.91037 -10.55981 -9.87281 -9.28071 -9.03103 -8.64675 -7.94556 -5.23804 0.07053 0.21927 0.43314 1.07975 1.47668 1.48773 1.57098 1.65797 1.76377 2.08170 2.31482 2.55790 3.26653 3.38531 3.70898 3.76831 3.80422 3.92488 4.02611 4.05085 4.22484 4.29683 4.41327 4.50870 4.60939 4.63753 4.75642 4.77038 4.77495 4.92172 4.99413 5.12956 5.18557 5.27594 5.40823 5.43349 5.50824 5.52985 5.64207 6.08207 6.19151 6.26892 6.87059 7.32899 8.08154 8.30901 9.29130 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003016 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.149876 B = 9282.444546 C =10474.300406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.129 4.129 12 C 0.123 3.877 13 N -0.602 5.602 14 C 0.588 3.412 15 O -0.563 6.563 16 C -0.016 4.016 17 C -0.085 4.085 18 C -0.179 4.179 19 C -0.087 4.087 20 C -0.211 4.211 21 S 0.155 5.845 22 C -0.027 4.027 23 N -0.520 5.520 24 H 0.433 0.567 25 C 0.096 3.904 26 C -0.138 4.138 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.202 0.798 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.040 0.960 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -19.812 -11.082 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.377 5.377 10 C 0.066 3.934 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.333 5.333 14 C 0.377 3.623 15 O -0.442 6.442 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.192 4.192 19 C -0.117 4.117 20 C -0.345 4.345 21 S 0.409 5.591 22 C -0.256 4.256 23 N -0.129 5.129 24 H 0.279 0.721 25 C -0.027 4.027 26 C -0.179 4.179 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.219 0.781 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.186 -19.217 -10.903 26.257 hybrid contribution -1.615 0.889 0.560 1.927 sum 12.571 -18.329 -10.343 24.514 Atomic orbital electron populations 1.69830 1.06761 1.25951 1.59777 1.25571 0.96292 1.01173 1.04019 0.85169 0.77811 0.79633 0.77328 1.21582 1.22676 1.19071 1.19639 0.91544 0.84980 1.40567 0.90083 1.42673 1.05406 1.01063 1.88577 1.20414 0.94588 0.84717 0.93699 1.22074 0.98527 0.94460 1.01758 1.21650 0.99587 0.96673 0.81967 1.48127 1.53788 1.14241 1.17180 1.17230 0.80470 0.81580 0.83034 1.90820 1.38289 1.50986 1.64125 1.19754 0.91849 1.04240 0.97043 1.20898 1.00297 0.98591 0.91541 1.19721 0.97678 1.03609 0.98153 1.20554 0.99010 1.00976 0.91191 1.25316 0.99526 1.03875 1.05784 1.83940 1.23231 1.45813 1.06157 1.24081 1.04167 1.03583 0.93738 1.42109 1.20511 1.36298 1.13995 0.72126 1.22411 0.95224 0.87249 0.97787 1.22515 0.99584 0.95971 0.99867 0.94180 0.79892 0.92562 0.93400 0.90399 0.89257 0.88672 0.82620 0.81847 0.78119 0.87918 0.88758 0.94074 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.24 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -35.80 5.12 -322.81 -1.65 -37.45 16 10 C 0.17 6.29 2.73 45.02 0.12 6.41 16 11 C -0.13 -4.09 5.55 30.67 0.17 -3.92 16 12 C 0.12 3.21 6.44 86.36 0.56 3.76 16 13 N -0.60 -15.60 2.97 -822.97 -2.44 -18.04 16 14 C 0.59 17.03 7.61 86.39 0.66 17.69 16 15 O -0.56 -19.75 16.37 -4.42 -0.07 -19.82 16 16 C -0.02 -0.40 6.29 39.81 0.25 -0.15 16 17 C -0.09 -2.12 10.67 22.77 0.24 -1.87 16 18 C -0.18 -3.92 6.80 -20.40 -0.14 -4.06 16 19 C -0.09 -1.38 10.42 23.40 0.24 -1.14 16 20 C -0.21 -2.63 11.03 67.05 0.74 -1.89 16 21 S 0.16 2.27 23.24 -56.49 -1.31 0.95 16 22 C -0.03 -0.55 8.41 83.79 0.70 0.15 16 23 N -0.52 -10.61 4.81 -179.04 -0.86 -11.47 16 24 H 0.43 6.82 6.40 -92.71 -0.59 6.23 16 25 C 0.10 2.18 5.31 86.51 0.46 2.64 16 26 C -0.14 -4.38 5.67 30.82 0.17 -4.20 16 27 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.37 19.84 7.80 -92.71 -0.72 19.12 16 29 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.09 2.44 7.00 -2.39 -0.02 2.42 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.92 4.22 -2.39 -0.01 1.91 16 39 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.97 341.46 1.23 -68.74 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.22 Total: 31.08 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.48 Total: -2.19 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.67 Total: -125.83 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.07 Total: -19.82 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.95 kcal Total: -69.97 1.23 -68.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996863607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.407 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds