Wall clock time and date at job start Tue Mar 31 2020 12:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00048 * 2 1 4 4 H 1.48496 * 109.47504 * 240.00085 * 3 2 1 5 5 H 1.48506 * 109.47156 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47229 * 120.00279 * 3 2 1 7 7 C 1.38813 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99725 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00251 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.46070 * 155.00281 * 10 9 7 12 12 C 1.53196 * 109.31267 * 181.38549 * 11 10 9 13 13 N 1.46929 * 108.77506 * 305.36177 * 12 11 10 14 14 C 1.34770 * 120.63327 * 233.58505 * 13 12 11 15 15 O 1.21734 * 119.99754 * 6.80492 * 14 13 12 16 16 C 1.46452 * 120.00506 * 186.80987 * 14 13 12 17 17 C 1.37463 * 125.80898 * 204.37158 * 16 14 13 18 18 C 1.40653 * 107.55272 * 179.97438 * 17 16 14 19 19 S 1.76029 * 142.39277 * 179.97438 * 18 17 16 20 20 C 1.75592 * 91.31060 * 180.02562 * 19 18 17 21 21 C 1.32770 * 110.47323 * 359.97438 * 20 19 18 22 22 C 1.38248 * 108.03898 * 359.97438 * 18 17 16 23 23 N 1.37919 * 125.79983 * 24.32025 * 16 14 13 24 24 H 0.97005 * 125.69000 * 359.77641 * 23 16 14 25 25 C 1.46927 * 118.73363 * 53.86056 * 13 12 11 26 26 C 1.53042 * 109.45920 * 275.06910 * 10 9 7 27 27 H 0.96998 * 119.99709 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00205 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.44848 * 35.03672 * 10 9 7 30 30 H 1.09004 * 109.50309 * 61.43334 * 11 10 9 31 31 H 1.09001 * 109.52787 * 301.34890 * 11 10 9 32 32 H 1.09000 * 109.58754 * 185.57801 * 12 11 10 33 33 H 1.09000 * 109.70320 * 65.21987 * 12 11 10 34 34 H 1.07998 * 126.22103 * 359.97438 * 17 16 14 35 35 H 1.08001 * 124.75937 * 180.02562 * 20 19 18 36 36 H 1.08003 * 122.16194 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.58824 * 65.92800 * 25 13 12 38 38 H 1.09005 * 109.58091 * 186.35235 * 25 13 12 39 39 H 1.09003 * 109.49882 * 298.56176 * 26 10 9 40 40 H 1.09000 * 109.50019 * 58.66381 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1804 -4.7522 0.6092 12 6 1.9619 -6.0695 0.6393 13 7 2.4414 -6.3659 -0.7176 14 6 2.1735 -7.5531 -1.2965 15 8 1.4267 -8.3428 -0.7482 16 6 2.7808 -7.8932 -2.5850 17 6 2.2793 -8.7892 -3.4990 18 6 3.1629 -8.8187 -4.5929 19 16 3.4148 -9.5755 -6.1621 20 6 4.9020 -8.6738 -6.4034 21 6 5.1412 -7.8854 -5.3622 22 6 4.1957 -7.9372 -4.3328 23 7 3.9527 -7.3682 -3.0882 24 1 4.5119 -6.7086 -2.6487 25 6 3.2238 -5.3458 -1.4289 26 6 2.4234 -4.0346 -1.4379 27 1 -0.4849 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.9683 -3.5503 0.5895 30 1 0.2814 -4.8763 0.0055 31 1 0.9008 -4.4719 1.6248 32 1 1.3098 -6.8736 0.9801 33 1 2.8121 -5.9770 1.3152 34 1 1.3719 -9.3657 -3.3957 35 1 5.5331 -8.7493 -7.2765 36 1 6.0097 -7.2452 -5.3134 37 1 4.1748 -5.1931 -0.9187 38 1 3.4044 -5.6723 -2.4531 39 1 1.5127 -4.1655 -2.0224 40 1 3.0290 -3.2431 -1.8794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997150391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:21 Heat of formation + Delta-G solvation = 43.934219 kcal Electronic energy + Delta-G solvation = -23988.122280 eV Core-core repulsion = 20509.175645 eV Total energy + Delta-G solvation = -3478.946635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63618 -40.79109 -38.79340 -36.45673 -36.09696 -33.91509 -32.53924 -31.80597 -31.14791 -29.27646 -26.73638 -25.01383 -24.53413 -23.96680 -22.94074 -21.75073 -21.33766 -20.20960 -19.32823 -18.93505 -17.79173 -17.08006 -16.74041 -16.66717 -16.43376 -15.60706 -15.50400 -15.35053 -15.27858 -15.04004 -14.94663 -14.56129 -14.46184 -13.92041 -13.80654 -13.35721 -13.22541 -12.82790 -12.80033 -12.72396 -12.50731 -12.26536 -12.21423 -12.04381 -11.75839 -11.71432 -11.36577 -11.32187 -10.90680 -10.74354 -9.88532 -9.11122 -9.02271 -8.64995 -7.93928 -5.23225 -0.24639 0.58125 0.84468 1.16365 1.47882 1.50360 1.56427 1.62731 1.78029 1.83261 2.20775 2.56319 3.33629 3.39086 3.72820 3.77716 3.82024 3.95760 3.99778 4.05889 4.24002 4.30647 4.39405 4.50498 4.52796 4.62801 4.75461 4.77610 4.78121 4.90422 4.96638 5.02434 5.08946 5.22970 5.40669 5.41557 5.50321 5.53247 5.58258 6.16115 6.27227 6.29594 6.86992 7.33298 8.08766 8.31503 9.29598 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.002908 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.330918 B = 9626.856594 C =10673.125172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.130 4.130 12 C 0.123 3.877 13 N -0.601 5.601 14 C 0.586 3.414 15 O -0.564 6.564 16 C -0.002 4.002 17 C -0.089 4.089 18 C -0.250 4.250 19 S 0.129 5.871 20 C -0.169 4.169 21 C -0.128 4.128 22 C 0.065 3.935 23 N -0.533 5.533 24 H 0.434 0.566 25 C 0.096 3.904 26 C -0.138 4.138 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.207 0.793 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.931 -19.076 -11.009 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.377 5.377 10 C 0.066 3.934 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.332 5.332 14 C 0.376 3.624 15 O -0.443 6.443 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.369 4.369 19 S 0.388 5.612 20 C -0.305 4.305 21 C -0.161 4.161 22 C -0.055 4.055 23 N -0.142 5.142 24 H 0.280 0.720 25 C -0.027 4.027 26 C -0.179 4.179 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.224 0.776 36 H 0.187 0.813 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.013 -20.260 -11.411 26.646 hybrid contribution 0.316 2.576 1.144 2.837 sum 13.329 -17.683 -10.267 24.408 Atomic orbital electron populations 1.69825 1.06778 1.26023 1.59729 1.25577 0.96282 1.01193 1.04006 0.85235 0.77147 0.79252 0.78273 1.20220 1.22744 1.20280 1.19611 0.91562 0.84983 1.40685 0.90038 1.42667 1.05394 1.01076 1.88600 1.20417 0.94576 0.84672 0.93766 1.22077 0.98531 0.94501 1.01741 1.21654 0.99592 0.96639 0.81996 1.48128 1.53716 1.14204 1.17189 1.17215 0.80523 0.81654 0.83034 1.90825 1.38248 1.51009 1.64222 1.19974 0.91761 1.03365 0.96525 1.20512 1.00377 0.99755 0.91308 1.22941 1.02602 1.08672 1.02720 1.83935 1.22034 1.45209 1.10035 1.25724 1.00737 1.00528 1.03510 1.19215 1.00764 1.04454 0.91651 1.18896 0.98392 0.99087 0.89128 1.42646 1.20427 1.36257 1.14852 0.72036 1.22439 0.95195 0.87111 0.97958 1.22512 0.99581 0.96061 0.99789 0.94186 0.79924 0.92506 0.93466 0.90436 0.89341 0.88585 0.83117 0.77569 0.81312 0.87765 0.88517 0.94170 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 44.86 29.55 68.60 2.03 46.88 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -12.52 9.93 84.03 0.83 -11.68 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -35.71 5.12 -322.82 -1.65 -37.37 16 10 C 0.17 6.24 2.73 45.02 0.12 6.37 16 11 C -0.13 -4.10 5.55 30.67 0.17 -3.93 16 12 C 0.12 3.19 6.44 86.36 0.56 3.75 16 13 N -0.60 -15.43 2.97 -823.00 -2.44 -17.87 16 14 C 0.59 17.02 7.61 86.38 0.66 17.68 16 15 O -0.56 -19.95 16.38 -4.46 -0.07 -20.02 16 16 C 0.00 -0.05 6.34 40.14 0.25 0.20 16 17 C -0.09 -2.29 10.69 22.68 0.24 -2.05 16 18 C -0.25 -5.64 7.26 22.86 0.17 -5.48 16 19 S 0.13 2.12 23.31 -56.49 -1.32 0.81 16 20 C -0.17 -1.96 11.13 66.64 0.74 -1.22 16 21 C -0.13 -1.75 10.16 21.49 0.22 -1.53 16 22 C 0.06 1.27 7.67 38.40 0.29 1.57 16 23 N -0.53 -10.40 4.88 -177.14 -0.86 -11.27 16 24 H 0.43 6.19 6.38 -92.70 -0.59 5.60 16 25 C 0.10 2.11 5.32 86.51 0.46 2.57 16 26 C -0.14 -4.32 5.67 30.82 0.17 -4.15 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 29 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.09 2.42 7.00 -2.39 -0.02 2.40 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.88 4.21 -2.38 -0.01 1.87 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.74 341.21 1.10 -69.64 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.22 Total: 29.86 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.36 Total: -1.83 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -4.68 Total: -125.34 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.07 Total: -20.02 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.81 kcal Total: -70.74 1.10 -69.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997150391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.574 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds