Wall clock time and date at job start Tue Mar 31 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47177 * 300.00114 * 3 2 1 6 6 H 1.48503 * 109.46995 * 60.00380 * 3 2 1 7 7 C 1.38810 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99999 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49789 * 324.92967 * 10 9 7 12 12 C 1.53045 * 109.52285 * 204.85306 * 10 9 7 13 13 C 1.53039 * 109.53760 * 178.66863 * 12 10 9 14 14 C 1.53196 * 109.31290 * 61.36403 * 13 12 10 15 15 N 1.46927 * 108.77563 * 305.36500 * 14 13 12 16 16 C 1.34781 * 120.62860 * 233.63401 * 15 14 13 17 17 O 1.21717 * 119.99668 * 173.19534 * 16 15 14 18 18 C 1.46487 * 119.99877 * 353.18663 * 16 15 14 19 19 C 1.36114 * 125.70993 * 156.14192 * 18 16 15 20 20 C 1.42225 * 107.62884 * 180.02562 * 19 18 16 21 21 C 1.45595 * 140.77914 * 179.97438 * 20 19 18 22 22 C 1.31813 * 114.63212 * 180.02562 * 21 20 19 23 23 S 1.75351 * 111.24289 * 0.02562 * 22 21 20 24 24 C 1.38173 * 106.99464 * 0.02562 * 20 19 18 25 25 N 1.37456 * 108.16527 * 359.73887 * 24 20 19 26 26 H 0.97001 * 125.68364 * 180.29564 * 25 24 20 27 27 C 1.46922 * 118.73818 * 53.60731 * 15 14 13 28 28 H 0.97003 * 119.99756 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99929 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.45731 * 298.68609 * 12 10 9 31 31 H 1.08993 * 109.46011 * 58.64555 * 12 10 9 32 32 H 1.09005 * 109.49923 * 181.31744 * 13 12 10 33 33 H 1.08998 * 109.50029 * 301.38169 * 13 12 10 34 34 H 1.08993 * 109.58442 * 65.15349 * 14 13 12 35 35 H 1.09004 * 109.58450 * 185.43501 * 14 13 12 36 36 H 1.08001 * 126.18257 * 0.02562 * 19 18 16 37 37 H 1.08005 * 122.68302 * 0.03640 * 21 20 19 38 38 H 1.08000 * 124.37707 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.58828 * 186.60608 * 27 15 14 40 40 H 1.09001 * 109.58630 * 66.17867 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9682 -3.5508 -0.5930 12 6 1.1802 -4.7536 -0.6100 13 6 1.9570 -6.0718 -0.6418 14 6 2.3205 -6.4803 0.7893 15 7 3.0405 -5.3709 1.4293 16 6 4.2451 -5.5722 1.9994 17 8 4.8870 -4.6257 2.4160 18 6 4.7816 -6.9301 2.1179 19 6 6.0982 -7.2573 2.2292 20 6 6.1839 -8.6741 2.3191 21 6 7.1685 -9.7385 2.4505 22 6 6.6614 -10.9546 2.4868 23 16 4.9127 -10.9178 2.3619 24 6 4.8924 -9.1615 2.2571 25 7 4.0362 -8.0927 2.1396 26 1 3.0694 -8.1460 2.0803 27 6 2.4227 -4.0380 1.4355 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0023 30 1 0.2818 -4.8761 -0.0051 31 1 0.8989 -4.4732 -1.6250 32 1 1.3396 -6.8470 -1.0958 33 1 2.8679 -5.9433 -1.2264 34 1 1.4111 -6.6973 1.3495 35 1 2.9556 -7.3660 0.7663 36 1 6.9277 -6.5659 2.2462 37 1 8.2296 -9.5469 2.5134 38 1 7.2472 -11.8570 2.5812 39 1 3.1271 -3.3105 1.8388 40 1 1.5215 -4.0557 2.0485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999846823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:36 Heat of formation + Delta-G solvation = 65.234581 kcal Electronic energy + Delta-G solvation = -24037.386517 eV Core-core repulsion = 20559.363535 eV Total energy + Delta-G solvation = -3478.022982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.68781 -39.54089 -37.37064 -35.69039 -34.50223 -32.40490 -31.31402 -30.72066 -29.23427 -27.95563 -25.57353 -24.11114 -23.28339 -22.34796 -22.00428 -20.36745 -19.90197 -19.57085 -18.29628 -17.13060 -16.80843 -15.92164 -15.64006 -15.33455 -14.92774 -14.68080 -14.46449 -14.21270 -14.11309 -13.61150 -13.59522 -13.36027 -12.94662 -12.89521 -12.49998 -12.41587 -12.07888 -11.90159 -11.42689 -11.10549 -11.09392 -10.89314 -10.72321 -10.65735 -10.21241 -10.03723 -9.88164 -9.71051 -9.68586 -9.14003 -8.55899 -8.44998 -7.89724 -7.04297 -5.81802 -3.11971 0.81124 1.08355 1.27421 1.71740 2.65806 2.83881 2.99051 3.37422 3.43183 3.49844 3.52342 4.28424 4.53072 4.56680 4.67479 4.76987 4.91788 5.07520 5.17045 5.29451 5.35586 5.44719 5.48777 5.51063 5.70838 5.80723 5.85927 5.90707 5.98287 6.07614 6.12014 6.21821 6.26150 6.39551 6.48768 6.61173 6.74851 6.87947 6.94650 7.46116 7.70249 8.16970 8.36191 9.48325 10.01157 10.36441 11.40420 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.002777 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.104111 B =10079.475891 C =10807.309686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.053 0.947 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.087 3.913 15 N -0.603 5.603 16 C 0.581 3.419 17 O -0.520 6.520 18 C 0.005 3.995 19 C -0.077 4.077 20 C -0.160 4.160 21 C -0.068 4.068 22 C -0.224 4.224 23 S 0.127 5.873 24 C -0.018 4.018 25 N -0.527 5.527 26 H 0.424 0.576 27 C 0.093 3.907 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.094 0.906 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -25.635 3.137 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.037 4.037 15 N -0.336 5.336 16 C 0.368 3.632 17 O -0.395 6.395 18 C -0.108 4.108 19 C -0.104 4.104 20 C -0.173 4.173 21 C -0.099 4.099 22 C -0.358 4.358 23 S 0.381 5.619 24 C -0.246 4.246 25 N -0.135 5.135 26 H 0.268 0.732 27 C -0.031 4.031 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.113 0.887 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.380 -25.964 3.328 27.197 hybrid contribution 0.623 1.865 0.029 1.966 sum 8.003 -24.100 3.357 25.615 Atomic orbital electron populations 1.69670 1.05146 1.25707 1.57483 1.24754 0.95529 0.97811 1.02575 0.86113 0.79023 0.83907 0.77177 1.20347 1.21829 1.21763 1.19325 0.91179 0.83901 1.42994 0.90898 1.42378 1.05798 0.99559 1.88075 1.20487 0.95010 0.86483 0.92318 0.92938 1.21833 0.98629 0.93942 1.02058 1.21850 1.01181 0.98452 0.95110 1.22160 0.96834 0.89607 0.95063 1.48225 1.18375 1.11532 1.55481 1.17074 0.81169 0.86243 0.78748 1.90885 1.57814 1.41453 1.49368 1.20165 0.91399 0.85528 1.13713 1.20734 0.94744 0.92589 1.02361 1.19381 0.91030 0.94040 1.12836 1.20352 0.99579 0.89987 0.99968 1.24846 0.96470 1.01436 1.13010 1.83873 1.04661 0.93027 1.80378 1.23610 0.93548 0.94888 1.12523 1.42241 1.08386 1.02897 1.60000 0.73245 1.22888 0.97818 0.80973 1.01446 0.93489 0.78059 0.91970 0.91158 0.90833 0.91286 0.91115 0.90072 0.82622 0.83761 0.81319 0.88734 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.72 -17.53 5.13 -53.31 -0.27 -17.80 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.07 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -1.90 5.36 -26.69 -0.14 -2.05 16 13 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 14 C 0.09 0.95 5.27 -3.71 -0.02 0.93 16 15 N -0.60 -9.06 2.97 -174.38 -0.52 -9.57 16 16 C 0.58 9.46 7.61 -12.94 -0.10 9.36 16 17 O -0.52 -10.49 16.36 5.17 0.08 -10.41 16 18 C 0.00 0.06 6.30 -82.47 -0.52 -0.45 16 19 C -0.08 -0.99 10.67 -38.82 -0.41 -1.40 16 20 C -0.16 -1.84 6.80 -105.46 -0.72 -2.55 16 21 C -0.07 -0.60 10.42 -38.54 -0.40 -1.01 16 22 C -0.22 -1.66 11.03 28.84 0.32 -1.34 16 23 S 0.13 1.02 23.24 -107.50 -2.50 -1.48 16 24 C -0.02 -0.19 8.41 -15.05 -0.13 -0.31 16 25 N -0.53 -5.60 4.81 -7.95 -0.04 -5.64 16 26 H 0.42 3.53 6.39 -40.82 -0.26 3.27 16 27 C 0.09 1.71 6.03 -3.71 -0.02 1.68 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.76 4.23 -51.93 -0.22 0.54 16 36 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -32.74 341.43 -10.08 -42.82 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.93 Total: 9.45 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.75 Total: -2.97 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.11 Total: -60.12 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.74 -10.08 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999846823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.051 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds