Wall clock time and date at job start Tue Mar 31 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48500 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47177 * 300.00114 * 3 2 1 6 6 H 1.48503 * 109.46995 * 60.00380 * 3 2 1 7 7 C 1.38810 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99999 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49789 * 324.92967 * 10 9 7 12 12 C 1.53045 * 109.52285 * 204.85306 * 10 9 7 13 13 C 1.53039 * 109.53760 * 178.66863 * 12 10 9 14 14 C 1.53196 * 109.31290 * 61.36403 * 13 12 10 15 15 N 1.46927 * 108.77563 * 305.36500 * 14 13 12 16 16 C 1.34781 * 120.62860 * 233.63401 * 15 14 13 17 17 O 1.21717 * 119.99668 * 173.19534 * 16 15 14 18 18 C 1.46487 * 119.99877 * 353.18663 * 16 15 14 19 19 C 1.36114 * 125.70993 * 156.14192 * 18 16 15 20 20 C 1.42225 * 107.62884 * 180.02562 * 19 18 16 21 21 C 1.45595 * 140.77914 * 179.97438 * 20 19 18 22 22 C 1.31813 * 114.63212 * 180.02562 * 21 20 19 23 23 S 1.75351 * 111.24289 * 0.02562 * 22 21 20 24 24 C 1.38173 * 106.99464 * 0.02562 * 20 19 18 25 25 N 1.37456 * 108.16527 * 359.73887 * 24 20 19 26 26 H 0.97001 * 125.68364 * 180.29564 * 25 24 20 27 27 C 1.46922 * 118.73818 * 53.60731 * 15 14 13 28 28 H 0.97003 * 119.99756 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99929 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.45731 * 298.68609 * 12 10 9 31 31 H 1.08993 * 109.46011 * 58.64555 * 12 10 9 32 32 H 1.09005 * 109.49923 * 181.31744 * 13 12 10 33 33 H 1.08998 * 109.50029 * 301.38169 * 13 12 10 34 34 H 1.08993 * 109.58442 * 65.15349 * 14 13 12 35 35 H 1.09004 * 109.58450 * 185.43501 * 14 13 12 36 36 H 1.08001 * 126.18257 * 0.02562 * 19 18 16 37 37 H 1.08005 * 122.68302 * 0.03640 * 21 20 19 38 38 H 1.08000 * 124.37707 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.58828 * 186.60608 * 27 15 14 40 40 H 1.09001 * 109.58630 * 66.17867 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 1 2.9682 -3.5508 -0.5930 12 6 1.1802 -4.7536 -0.6100 13 6 1.9570 -6.0718 -0.6418 14 6 2.3205 -6.4803 0.7893 15 7 3.0405 -5.3709 1.4293 16 6 4.2451 -5.5722 1.9994 17 8 4.8870 -4.6257 2.4160 18 6 4.7816 -6.9301 2.1179 19 6 6.0982 -7.2573 2.2292 20 6 6.1839 -8.6741 2.3191 21 6 7.1685 -9.7385 2.4505 22 6 6.6614 -10.9546 2.4868 23 16 4.9127 -10.9178 2.3619 24 6 4.8924 -9.1615 2.2571 25 7 4.0362 -8.0927 2.1396 26 1 3.0694 -8.1460 2.0803 27 6 2.4227 -4.0380 1.4355 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0023 30 1 0.2818 -4.8761 -0.0051 31 1 0.8989 -4.4732 -1.6250 32 1 1.3396 -6.8470 -1.0958 33 1 2.8679 -5.9433 -1.2264 34 1 1.4111 -6.6973 1.3495 35 1 2.9556 -7.3660 0.7663 36 1 6.9277 -6.5659 2.2462 37 1 8.2296 -9.5469 2.5134 38 1 7.2472 -11.8570 2.5812 39 1 3.1271 -3.3105 1.8388 40 1 1.5215 -4.0557 2.0485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999846823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:36 Heat of formation + Delta-G solvation = 43.920870 kcal Electronic energy + Delta-G solvation = -24038.310749 eV Core-core repulsion = 20559.363535 eV Total energy + Delta-G solvation = -3478.947214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.63817 -40.74607 -38.76037 -36.61456 -36.04863 -33.97894 -32.85695 -31.65243 -30.61340 -29.21642 -26.77517 -25.96432 -24.07882 -23.50326 -23.30050 -21.48698 -21.12935 -20.37963 -19.41779 -19.08435 -17.91829 -17.11239 -16.96302 -16.44942 -16.17280 -15.68845 -15.62751 -15.47850 -15.30677 -15.16205 -15.04317 -14.44857 -14.18217 -14.03758 -13.83406 -13.67322 -13.15706 -12.94312 -12.78779 -12.64853 -12.58919 -12.19188 -12.04077 -11.97910 -11.77183 -11.73228 -11.41392 -11.31500 -11.10587 -10.56272 -9.91709 -9.27545 -9.05911 -8.63143 -8.01162 -5.30384 0.07358 0.20600 0.43659 1.08204 1.43017 1.44407 1.54413 1.67816 1.74186 2.07862 2.32009 2.51600 3.28593 3.33327 3.60440 3.80056 3.89993 3.92629 4.02353 4.04585 4.21181 4.28614 4.38522 4.45835 4.62573 4.63505 4.76150 4.76932 4.80839 4.92038 5.04762 5.15792 5.20545 5.30532 5.37314 5.39319 5.43314 5.50103 5.63492 6.09742 6.21806 6.24922 6.90116 7.28842 7.99803 8.25589 9.21524 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.002777 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.104111 B =10079.475891 C =10807.309686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.083 3.917 15 N -0.599 5.599 16 C 0.579 3.421 17 O -0.573 6.573 18 C -0.011 4.011 19 C -0.086 4.086 20 C -0.179 4.179 21 C -0.089 4.089 22 C -0.211 4.211 23 S 0.167 5.833 24 C -0.024 4.024 25 N -0.517 5.517 26 H 0.435 0.565 27 C 0.108 3.892 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.202 0.798 39 H 0.053 0.947 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -29.391 2.997 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.039 4.039 15 N -0.331 5.331 16 C 0.368 3.632 17 O -0.452 6.452 18 C -0.124 4.124 19 C -0.115 4.115 20 C -0.192 4.192 21 C -0.119 4.119 22 C -0.345 4.345 23 S 0.420 5.580 24 C -0.252 4.252 25 N -0.127 5.127 26 H 0.280 0.720 27 C -0.017 4.017 28 H 0.062 0.938 29 H 0.211 0.789 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.219 0.781 39 H 0.071 0.929 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.529 -29.796 3.170 30.895 hybrid contribution 0.650 2.834 0.085 2.909 sum 8.178 -26.962 3.255 28.362 Atomic orbital electron populations 1.69789 1.06274 1.26135 1.59087 1.25469 0.96398 1.00761 1.03341 0.85174 0.78057 0.80196 0.76964 1.19832 1.21456 1.21785 1.19537 0.91034 0.85442 1.41624 0.91730 1.42489 1.05544 1.00502 1.88262 1.20644 0.94680 0.86194 0.92785 0.95204 1.21735 0.98495 0.94059 1.01284 1.21839 1.00945 0.97363 0.95572 1.22516 0.98017 0.88622 0.94756 1.48198 1.18305 1.11215 1.55422 1.17467 0.80871 0.87014 0.77877 1.90847 1.59312 1.43411 1.51672 1.19585 0.91807 0.84855 1.16179 1.20879 0.94629 0.93829 1.02133 1.19677 0.92535 0.93660 1.13302 1.20538 1.00225 0.89713 1.01392 1.25324 0.96560 1.02088 1.10508 1.83858 1.04869 0.89869 1.79360 1.24090 0.93274 0.96443 1.11408 1.42043 1.08799 1.02034 1.59783 0.71953 1.22334 0.96893 0.82268 1.00251 0.93793 0.78876 0.90892 0.91769 0.86655 0.92196 0.88151 0.87912 0.83192 0.82106 0.78074 0.92860 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.98 9.93 84.03 0.83 -13.15 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -36.73 5.13 -322.57 -1.65 -38.39 16 10 C 0.17 6.65 2.92 45.07 0.13 6.78 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.12 -3.41 5.36 30.62 0.16 -3.25 16 13 C -0.12 -2.41 6.08 30.67 0.19 -2.23 16 14 C 0.08 1.60 5.27 86.36 0.46 2.05 16 15 N -0.60 -18.04 2.97 -823.82 -2.45 -20.49 16 16 C 0.58 19.48 7.61 86.39 0.66 20.13 16 17 O -0.57 -24.72 16.36 -4.40 -0.07 -24.79 16 18 C -0.01 -0.30 6.30 39.81 0.25 -0.05 16 19 C -0.09 -2.25 10.67 22.77 0.24 -2.01 16 20 C -0.18 -3.84 6.80 -20.41 -0.14 -3.98 16 21 C -0.09 -1.34 10.42 23.39 0.24 -1.10 16 22 C -0.21 -2.31 11.03 67.04 0.74 -1.57 16 23 S 0.17 2.05 23.24 -56.49 -1.31 0.74 16 24 C -0.02 -0.45 8.41 83.80 0.70 0.26 16 25 N -0.52 -9.98 4.81 -179.06 -0.86 -10.84 16 26 H 0.43 5.98 6.39 -92.71 -0.59 5.39 16 27 C 0.11 4.11 6.03 86.36 0.52 4.63 16 28 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.38 19.94 7.80 -92.71 -0.72 19.22 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.61 4.23 -2.39 -0.01 1.60 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 37 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -74.85 341.43 1.20 -73.65 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.22 Total: 25.88 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.46 Total: 3.09 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -4.68 Total: -128.13 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -74.85 1.20 -73.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999846823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.575 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds