Wall clock time and date at job start Tue Mar 31 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47445 * 270.27975 * 3 2 1 5 5 H 1.48497 * 109.47270 * 30.28254 * 3 2 1 6 6 H 1.48501 * 109.46909 * 150.27653 * 3 2 1 7 7 C 1.38809 * 119.99766 * 180.28498 * 2 1 3 8 8 H 1.08003 * 120.00292 * 359.71715 * 7 2 1 9 9 N 1.36936 * 120.00139 * 179.72502 * 7 2 1 10 10 C 1.46501 * 120.00450 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.49581 * 34.92972 * 10 9 7 12 12 C 1.53042 * 109.49731 * 154.99661 * 10 9 7 13 13 C 1.53043 * 109.53280 * 181.31669 * 12 10 9 14 14 C 1.53188 * 109.31622 * 298.63325 * 13 12 10 15 15 N 1.46932 * 108.77262 * 54.63951 * 14 13 12 16 16 C 1.34773 * 120.62873 * 126.37003 * 15 14 13 17 17 O 1.21734 * 119.99529 * 179.75183 * 16 15 14 18 18 C 1.46493 * 120.00370 * 359.75297 * 16 15 14 19 19 C 1.36109 * 125.70923 * 210.20842 * 18 16 15 20 20 C 1.42235 * 107.62406 * 179.97438 * 19 18 16 21 21 C 1.45595 * 140.77768 * 179.97438 * 20 19 18 22 22 C 1.31805 * 114.62832 * 180.02562 * 21 20 19 23 23 S 1.75350 * 111.24726 * 359.97438 * 22 21 20 24 24 C 1.38166 * 106.99109 * 359.97438 * 20 19 18 25 25 N 1.37457 * 108.17167 * 359.77270 * 24 20 19 26 26 H 0.97004 * 125.68371 * 180.22026 * 25 24 20 27 27 C 1.46926 * 118.73949 * 306.38974 * 15 14 13 28 28 H 0.96997 * 119.99980 * 359.72031 * 1 2 3 29 29 H 0.97004 * 119.99887 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46177 * 301.33623 * 12 10 9 31 31 H 1.08996 * 109.45845 * 61.31381 * 12 10 9 32 32 H 1.09000 * 109.50165 * 58.59362 * 13 12 10 33 33 H 1.09004 * 109.49697 * 178.68273 * 13 12 10 34 34 H 1.08999 * 109.59068 * 174.42201 * 14 13 12 35 35 H 1.08998 * 109.59292 * 294.85353 * 14 13 12 36 36 H 1.08007 * 126.19214 * 359.96028 * 19 18 16 37 37 H 1.07996 * 122.68567 * 0.02562 * 21 20 19 38 38 H 1.08002 * 124.37907 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.58366 * 293.82592 * 27 15 14 40 40 H 1.08992 * 109.59162 * 173.39903 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4507 2.6509 0.7060 6 1 3.5506 1.4384 0.6942 7 6 2.0102 -1.2021 -0.0060 8 1 1.4702 -2.1375 -0.0060 9 7 3.3795 -1.2022 -0.0117 10 6 4.1121 -2.4709 -0.0174 11 1 3.5619 -3.2060 -0.6051 12 6 5.4972 -2.2582 -0.6325 13 6 6.2508 -3.5897 -0.6690 14 6 6.4313 -4.1091 0.7608 15 7 5.1142 -4.1788 1.4084 16 6 4.6902 -5.3230 1.9806 17 8 3.5987 -5.3666 2.5179 18 6 5.5426 -6.5141 1.9561 19 6 5.1061 -7.8032 1.9389 20 6 6.2519 -8.6456 1.9172 21 6 6.6152 -10.0553 1.8927 22 6 7.9124 -10.2881 1.8799 23 16 8.8267 -8.7919 1.8960 24 6 7.3600 -7.8203 1.9217 25 7 6.9236 -6.5169 1.9399 26 1 7.4911 -5.7302 1.9437 27 6 4.2682 -2.9777 1.4198 28 1 -0.4850 0.8400 0.0041 29 1 3.8646 -0.3621 -0.0119 30 1 5.3890 -1.8743 -1.6469 31 1 6.0556 -1.5415 -0.0305 32 1 5.6809 -4.3146 -1.2502 33 1 7.2282 -3.4421 -1.1285 34 1 6.8787 -5.1027 0.7350 35 1 7.0768 -3.4299 1.3177 36 1 4.0760 -8.1278 1.9414 37 1 5.8805 -10.8468 1.8855 38 1 8.3551 -11.2731 1.8618 39 1 4.7373 -2.2061 2.0303 40 1 3.2885 -3.2246 1.8287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999846824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:39 Heat of formation + Delta-G solvation = 71.305598 kcal Electronic energy + Delta-G solvation = -24093.873613 eV Core-core repulsion = 20616.113890 eV Total energy + Delta-G solvation = -3477.759723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.71485 -39.59309 -37.45775 -35.71566 -34.64511 -32.43847 -31.44806 -30.76241 -29.52152 -28.24472 -25.63682 -24.02337 -23.29598 -22.39064 -21.80626 -20.42212 -20.02689 -19.60124 -18.34190 -17.60676 -16.84848 -15.97714 -15.66422 -15.32782 -14.94907 -14.66011 -14.56565 -14.32430 -14.19350 -13.87899 -13.48750 -13.27022 -12.97025 -12.84079 -12.68368 -12.50823 -12.10212 -11.99895 -11.63744 -11.28542 -11.10738 -10.99357 -10.81945 -10.73710 -10.37214 -10.01127 -9.97686 -9.70430 -9.61972 -9.17785 -8.59513 -8.48359 -7.90732 -7.34996 -5.80382 -3.18498 0.79860 1.07559 1.28819 1.70888 2.63052 2.80707 2.93372 3.33292 3.34511 3.35564 3.42252 4.25531 4.52704 4.54529 4.58084 4.76202 4.84492 4.99527 5.14194 5.20534 5.25220 5.36165 5.40012 5.50944 5.60912 5.70111 5.77437 5.85352 5.90564 5.94216 6.00487 6.13278 6.21221 6.29055 6.46088 6.51827 6.63535 6.79112 6.89114 7.40758 7.94566 8.14182 8.38015 9.14633 9.86111 10.04075 11.37491 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.030677 B = 0.002821 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.503771 B = 9924.927197 C =10513.642287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.062 0.938 12 C -0.130 4.130 13 C -0.127 4.127 14 C 0.085 3.915 15 N -0.602 5.602 16 C 0.581 3.419 17 O -0.516 6.516 18 C 0.006 3.994 19 C -0.078 4.078 20 C -0.159 4.159 21 C -0.068 4.068 22 C -0.224 4.224 23 S 0.127 5.873 24 C -0.019 4.019 25 N -0.527 5.527 26 H 0.424 0.576 27 C 0.093 3.907 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.299 -17.858 2.127 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.080 0.920 12 C -0.168 4.168 13 C -0.166 4.166 14 C -0.038 4.038 15 N -0.335 5.335 16 C 0.367 3.633 17 O -0.392 6.392 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.171 4.171 21 C -0.099 4.099 22 C -0.357 4.357 23 S 0.380 5.620 24 C -0.247 4.247 25 N -0.136 5.136 26 H 0.267 0.733 27 C -0.031 4.031 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.081 0.919 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 22.956 -17.419 2.404 28.916 hybrid contribution -0.542 1.322 0.043 1.429 sum 22.414 -16.097 2.446 27.703 Atomic orbital electron populations 1.69704 1.05120 1.25909 1.56891 1.24690 0.95229 0.97213 1.01696 0.86553 0.79170 0.85030 0.77743 1.21047 1.21676 1.20362 1.19100 0.80312 0.94915 1.43656 0.88982 1.42725 1.04173 1.01631 1.89806 1.20464 0.90997 0.89645 0.92694 0.92025 1.21874 0.96734 0.96217 1.01992 1.21840 1.01039 0.98383 0.95333 1.22209 0.85060 1.01710 0.94851 1.48201 1.18261 1.11734 1.55322 1.17082 0.85684 0.81271 0.79246 1.90910 1.20878 1.82890 1.44473 1.20129 0.81000 0.95728 1.13807 1.20732 0.98284 0.88871 1.02616 1.19376 0.92559 0.92317 1.12882 1.20355 0.95615 0.93915 0.99972 1.24843 0.96754 1.01026 1.13116 1.83862 1.01979 0.95068 1.81104 1.23600 0.99735 0.88506 1.12811 1.42245 1.05801 1.04951 1.60604 0.73266 1.22806 0.95648 0.83744 1.00923 0.92946 0.80444 0.91055 0.92085 0.91074 0.90773 0.89909 0.91040 0.82599 0.83725 0.81311 0.91868 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.98 10.41 -15.06 -0.16 -7.14 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 9 N -0.74 -16.96 4.93 -53.30 -0.26 -17.22 16 10 C 0.17 3.20 2.92 -67.81 -0.20 3.00 16 11 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 12 C -0.13 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 14 C 0.09 0.88 5.54 -3.71 -0.02 0.86 16 15 N -0.60 -8.77 2.97 -174.37 -0.52 -9.29 16 16 C 0.58 9.33 7.61 -12.94 -0.10 9.23 16 17 O -0.52 -10.42 16.40 5.16 0.08 -10.34 16 18 C 0.01 0.08 6.28 -82.47 -0.52 -0.44 16 19 C -0.08 -1.00 10.71 -38.81 -0.42 -1.41 16 20 C -0.16 -1.81 6.80 -105.46 -0.72 -2.52 16 21 C -0.07 -0.60 10.42 -38.54 -0.40 -1.00 16 22 C -0.22 -1.64 11.03 28.84 0.32 -1.33 16 23 S 0.13 1.00 23.24 -107.50 -2.50 -1.50 16 24 C -0.02 -0.20 8.41 -15.06 -0.13 -0.32 16 25 N -0.53 -5.45 4.80 -7.95 -0.04 -5.49 16 26 H 0.42 3.34 6.49 -40.82 -0.26 3.07 16 27 C 0.09 1.65 6.02 -3.71 -0.02 1.63 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.73 3.90 -51.93 -0.20 0.53 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 2.13 7.00 -51.93 -0.36 1.76 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -33.94 338.38 -9.71 -43.65 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.88 Total: 9.26 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.76 Total: -2.79 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.04 Total: -60.41 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.94 -9.71 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999846824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.959 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds