Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99536 * 2 1 4 4 H 1.48503 * 109.47009 * 272.94542 * 3 2 1 5 5 H 1.48494 * 109.47092 * 32.94602 * 3 2 1 6 6 H 1.48499 * 109.46768 * 152.94397 * 3 2 1 7 7 C 1.38806 * 120.00544 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99639 * 339.33814 * 7 2 1 9 9 N 1.36930 * 120.00313 * 159.34009 * 7 2 1 10 10 C 1.46920 * 120.63201 * 332.63156 * 9 7 2 11 11 C 1.53192 * 108.77911 * 233.58536 * 10 9 7 12 12 C 1.53047 * 109.31136 * 305.36319 * 11 10 9 13 13 N 1.46501 * 109.46090 * 181.37965 * 12 11 10 14 14 C 1.34773 * 119.99614 * 155.00201 * 13 12 11 15 15 O 1.21718 * 120.00385 * 359.97438 * 14 13 12 16 16 C 1.46500 * 119.99684 * 180.02562 * 14 13 12 17 17 C 1.36104 * 125.71162 * 179.97438 * 16 14 13 18 18 C 1.42223 * 107.62953 * 180.02562 * 17 16 14 19 19 C 1.45593 * 140.78188 * 180.02562 * 18 17 16 20 20 C 1.31809 * 114.63128 * 179.97438 * 19 18 17 21 21 S 1.75354 * 111.24693 * 359.97438 * 20 19 18 22 22 C 1.38179 * 106.99269 * 359.97438 * 18 17 16 23 23 N 1.37460 * 108.16716 * 359.73801 * 22 18 17 24 24 H 0.96995 * 125.68744 * 180.25784 * 23 22 18 25 25 C 1.53048 * 109.53558 * 61.36325 * 12 11 10 26 26 C 1.46928 * 120.63082 * 152.60467 * 9 7 2 27 27 H 0.97000 * 120.00645 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.59109 * 113.79722 * 10 9 7 29 29 H 1.08998 * 109.70515 * 353.44148 * 10 9 7 30 30 H 1.08992 * 109.50159 * 185.41557 * 11 10 9 31 31 H 1.08999 * 109.49912 * 65.31341 * 11 10 9 32 32 H 1.08993 * 109.46143 * 301.36104 * 12 11 10 33 33 H 0.96999 * 119.99582 * 335.00855 * 13 12 11 34 34 H 1.08008 * 126.18784 * 0.02562 * 17 16 14 35 35 H 1.07996 * 122.68312 * 359.93357 * 19 18 17 36 36 H 1.08005 * 124.37914 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.49742 * 58.58690 * 25 12 11 38 38 H 1.09001 * 109.49347 * 178.68392 * 25 12 11 39 39 H 1.08998 * 109.59468 * 246.20327 * 26 9 7 40 40 H 1.09003 * 109.58639 * 6.48940 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4352 2.0825 -1.3983 5 1 1.4800 2.6339 0.7614 6 1 3.5774 1.4231 0.6368 7 6 2.0103 -1.2020 -0.0005 8 1 1.5224 -2.1074 0.3291 9 7 3.3136 -1.2399 -0.4189 10 6 3.8172 -0.2582 -1.3891 11 6 4.4621 -1.0075 -2.5593 12 6 5.5290 -1.9640 -2.0215 13 7 6.1708 -2.6583 -3.1406 14 6 7.4212 -3.1425 -3.0051 15 8 8.0174 -3.0026 -1.9532 16 6 8.0632 -3.8363 -4.1244 17 6 9.3159 -4.3685 -4.1158 18 6 9.5473 -4.9460 -5.3947 19 6 10.5721 -5.6632 -6.1398 20 6 10.2335 -5.9805 -7.3735 21 16 8.6120 -5.4287 -7.7494 22 6 8.4049 -4.7388 -6.1441 23 7 7.4962 -4.0654 -5.3629 24 1 6.6063 -3.7936 -5.6367 25 6 4.8753 -2.9897 -1.0926 26 6 4.2351 -2.2628 0.0942 27 1 -0.4851 0.8400 0.0004 28 1 4.5596 0.3807 -0.9107 29 1 2.9922 0.3522 -1.7563 30 1 4.9245 -0.2918 -3.2390 31 1 3.6995 -1.5756 -3.0921 32 1 6.2779 -1.3981 -1.4676 33 1 5.6958 -2.7693 -3.9790 34 1 10.0089 -4.3548 -3.2875 35 1 11.5330 -5.9146 -5.7158 36 1 10.8722 -6.5117 -8.0638 37 1 4.1088 -3.5391 -1.6392 38 1 5.6319 -3.6847 -0.7284 39 1 5.0116 -1.7875 0.6936 40 1 3.6846 -2.9756 0.7082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003404594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = 60.403952 kcal Electronic energy + Delta-G solvation = -23711.941535 eV Core-core repulsion = 20233.709081 eV Total energy + Delta-G solvation = -3478.232454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.59603 -39.57088 -37.64605 -35.66518 -34.72024 -32.28362 -30.76925 -30.56218 -30.35236 -28.59936 -25.25847 -23.61810 -23.14593 -22.75276 -21.60330 -20.39562 -20.03206 -19.47166 -19.30154 -17.19293 -16.65585 -16.17333 -15.53077 -15.30995 -15.14717 -14.84505 -14.42775 -14.21797 -14.18644 -13.87108 -13.71897 -13.15509 -13.06295 -12.98308 -12.43918 -12.17625 -12.06392 -11.97281 -11.84822 -11.15969 -11.09153 -10.88765 -10.63806 -10.37747 -10.31865 -10.09382 -9.81658 -9.80068 -9.51796 -9.01756 -8.67941 -8.60355 -7.99140 -7.04411 -5.99107 -3.35411 0.73481 0.99861 1.12444 1.64845 2.59646 2.77339 3.00260 3.24428 3.27280 3.46065 3.48951 4.34434 4.48692 4.55797 4.70605 4.89648 5.04411 5.12657 5.25103 5.28555 5.32806 5.42093 5.57320 5.74208 5.77830 5.86110 5.95302 5.96829 6.07803 6.11741 6.24374 6.31882 6.38979 6.51339 6.56443 6.58298 6.62372 6.79751 6.86354 7.39473 7.91229 8.04259 8.28667 8.89128 9.67318 10.04476 11.16764 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.002505 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.943036 B =11173.878676 C =11482.809690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.151 3.849 13 N -0.721 5.721 14 C 0.585 3.415 15 O -0.522 6.522 16 C -0.004 4.004 17 C -0.071 4.071 18 C -0.163 4.163 19 C -0.069 4.069 20 C -0.223 4.223 21 S 0.131 5.869 22 C -0.010 4.010 23 N -0.525 5.525 24 H 0.421 0.579 25 C -0.142 4.142 26 C 0.151 3.849 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.391 0.609 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.252 -10.677 -16.656 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.371 5.371 14 C 0.371 3.629 15 O -0.397 6.397 16 C -0.117 4.117 17 C -0.098 4.098 18 C -0.176 4.176 19 C -0.099 4.099 20 C -0.357 4.357 21 S 0.384 5.616 22 C -0.239 4.239 23 N -0.129 5.129 24 H 0.259 0.741 25 C -0.182 4.182 26 C 0.024 3.976 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.473 -10.501 -17.065 27.253 hybrid contribution 0.560 1.116 0.515 1.351 sum 19.034 -9.384 -16.550 26.912 Atomic orbital electron populations 1.69832 1.05728 1.26598 1.52899 1.25291 0.95242 0.97582 0.99484 0.86978 0.80178 0.84689 0.77002 1.21664 1.23056 1.19432 1.18925 0.84896 0.94818 1.40205 0.89605 1.44404 1.08739 1.33320 1.46508 1.21304 0.97348 0.92047 0.89005 1.22364 0.97392 0.98399 0.99937 1.21082 0.94468 0.93170 0.86482 1.46210 1.15196 1.58438 1.17255 1.16968 0.81393 0.78507 0.86042 1.90880 1.63968 1.57748 1.27148 1.20194 0.95794 1.09730 0.85976 1.20753 0.94660 0.98396 0.96041 1.19398 0.94193 1.08367 0.95616 1.20343 0.98933 0.97782 0.92892 1.24874 0.99465 1.10475 1.00875 1.83963 1.13383 1.58909 1.05305 1.23577 0.94616 1.06544 0.99147 1.41429 1.14635 1.46873 1.09944 0.74108 1.22397 0.99453 0.97959 0.98382 1.20901 0.92374 0.91372 0.92939 0.92728 0.95362 0.90430 0.92196 0.91149 0.89457 0.77585 0.82488 0.83697 0.81235 0.91819 0.92056 0.95556 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.47 13.97 55.49 0.78 -26.69 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.02 24.35 -169.99 -4.14 17.88 16 4 H -0.29 -6.89 6.62 56.52 0.37 -6.52 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.65 6.63 56.52 0.37 -6.28 16 7 C -0.26 -7.14 10.03 -15.06 -0.15 -7.30 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.07 2.77 -172.32 -0.48 -14.55 16 10 C 0.13 2.71 4.20 -3.71 -0.02 2.69 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 12 C 0.15 2.34 2.42 -67.88 -0.16 2.18 16 13 N -0.72 -9.03 5.07 -55.12 -0.28 -9.31 16 14 C 0.59 8.09 7.74 -12.93 -0.10 7.99 16 15 O -0.52 -9.04 16.51 5.17 0.09 -8.95 16 16 C 0.00 -0.05 6.97 -82.47 -0.57 -0.62 16 17 C -0.07 -0.82 10.58 -38.82 -0.41 -1.23 16 18 C -0.16 -1.73 6.80 -105.46 -0.72 -2.45 16 19 C -0.07 -0.56 10.42 -38.54 -0.40 -0.96 16 20 C -0.22 -1.54 11.03 28.84 0.32 -1.22 16 21 S 0.13 0.99 23.24 -107.50 -2.50 -1.50 16 22 C -0.01 -0.10 8.41 -15.05 -0.13 -0.23 16 23 N -0.53 -4.95 6.08 -7.94 -0.05 -4.99 16 24 H 0.42 2.81 8.14 -40.82 -0.33 2.48 16 25 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 26 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 29 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 33 H 0.39 3.75 7.67 -40.82 -0.31 3.43 16 34 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -33.00 338.05 -9.29 -42.29 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.05 Total: 3.32 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.76 Total: -2.59 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.03 Total: -55.54 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.00 -9.29 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003404594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.692 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds