Wall clock time and date at job start Tue Mar 31 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99536 * 2 1 4 4 H 1.48503 * 109.47009 * 272.94542 * 3 2 1 5 5 H 1.48494 * 109.47092 * 32.94602 * 3 2 1 6 6 H 1.48499 * 109.46768 * 152.94397 * 3 2 1 7 7 C 1.38806 * 120.00544 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99639 * 339.33814 * 7 2 1 9 9 N 1.36930 * 120.00313 * 159.34009 * 7 2 1 10 10 C 1.46920 * 120.63201 * 332.63156 * 9 7 2 11 11 C 1.53192 * 108.77911 * 233.58536 * 10 9 7 12 12 C 1.53047 * 109.31136 * 305.36319 * 11 10 9 13 13 N 1.46501 * 109.46090 * 181.37965 * 12 11 10 14 14 C 1.34773 * 119.99614 * 155.00201 * 13 12 11 15 15 O 1.21718 * 120.00385 * 359.97438 * 14 13 12 16 16 C 1.46500 * 119.99684 * 180.02562 * 14 13 12 17 17 C 1.36104 * 125.71162 * 179.97438 * 16 14 13 18 18 C 1.42223 * 107.62953 * 180.02562 * 17 16 14 19 19 C 1.45593 * 140.78188 * 180.02562 * 18 17 16 20 20 C 1.31809 * 114.63128 * 179.97438 * 19 18 17 21 21 S 1.75354 * 111.24693 * 359.97438 * 20 19 18 22 22 C 1.38179 * 106.99269 * 359.97438 * 18 17 16 23 23 N 1.37460 * 108.16716 * 359.73801 * 22 18 17 24 24 H 0.96995 * 125.68744 * 180.25784 * 23 22 18 25 25 C 1.53048 * 109.53558 * 61.36325 * 12 11 10 26 26 C 1.46928 * 120.63082 * 152.60467 * 9 7 2 27 27 H 0.97000 * 120.00645 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.59109 * 113.79722 * 10 9 7 29 29 H 1.08998 * 109.70515 * 353.44148 * 10 9 7 30 30 H 1.08992 * 109.50159 * 185.41557 * 11 10 9 31 31 H 1.08999 * 109.49912 * 65.31341 * 11 10 9 32 32 H 1.08993 * 109.46143 * 301.36104 * 12 11 10 33 33 H 0.96999 * 119.99582 * 335.00855 * 13 12 11 34 34 H 1.08008 * 126.18784 * 0.02562 * 17 16 14 35 35 H 1.07996 * 122.68312 * 359.93357 * 19 18 17 36 36 H 1.08005 * 124.37914 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.49742 * 58.58690 * 25 12 11 38 38 H 1.09001 * 109.49347 * 178.68392 * 25 12 11 39 39 H 1.08998 * 109.59468 * 246.20327 * 26 9 7 40 40 H 1.09003 * 109.58639 * 6.48940 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4352 2.0825 -1.3983 5 1 1.4800 2.6339 0.7614 6 1 3.5774 1.4231 0.6368 7 6 2.0103 -1.2020 -0.0005 8 1 1.5224 -2.1074 0.3291 9 7 3.3136 -1.2399 -0.4189 10 6 3.8172 -0.2582 -1.3891 11 6 4.4621 -1.0075 -2.5593 12 6 5.5290 -1.9640 -2.0215 13 7 6.1708 -2.6583 -3.1406 14 6 7.4212 -3.1425 -3.0051 15 8 8.0174 -3.0026 -1.9532 16 6 8.0632 -3.8363 -4.1244 17 6 9.3159 -4.3685 -4.1158 18 6 9.5473 -4.9460 -5.3947 19 6 10.5721 -5.6632 -6.1398 20 6 10.2335 -5.9805 -7.3735 21 16 8.6120 -5.4287 -7.7494 22 6 8.4049 -4.7388 -6.1441 23 7 7.4962 -4.0654 -5.3629 24 1 6.6063 -3.7936 -5.6367 25 6 4.8753 -2.9897 -1.0926 26 6 4.2351 -2.2628 0.0942 27 1 -0.4851 0.8400 0.0004 28 1 4.5596 0.3807 -0.9107 29 1 2.9922 0.3522 -1.7563 30 1 4.9245 -0.2918 -3.2390 31 1 3.6995 -1.5756 -3.0921 32 1 6.2779 -1.3981 -1.4676 33 1 5.6958 -2.7693 -3.9790 34 1 10.0089 -4.3548 -3.2875 35 1 11.5330 -5.9146 -5.7158 36 1 10.8722 -6.5117 -8.0638 37 1 4.1088 -3.5391 -1.6392 38 1 5.6319 -3.6847 -0.7284 39 1 5.0116 -1.7875 0.6936 40 1 3.6846 -2.9756 0.7082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003404594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:45 Heat of formation + Delta-G solvation = 37.618107 kcal Electronic energy + Delta-G solvation = -23712.929603 eV Core-core repulsion = 20233.709081 eV Total energy + Delta-G solvation = -3479.220522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40963 -40.72062 -39.11499 -36.36192 -36.13390 -34.12422 -32.07565 -31.97124 -31.55679 -29.48942 -26.91851 -24.87073 -24.30464 -23.85574 -22.98724 -21.41684 -21.17761 -20.49219 -20.14430 -18.87106 -17.74963 -17.60751 -16.86200 -16.46031 -15.99635 -15.95043 -15.52844 -15.44528 -15.37845 -15.32208 -14.77892 -14.60004 -14.47238 -14.23792 -13.91917 -13.68175 -13.49770 -12.80665 -12.64733 -12.61345 -12.59698 -12.31410 -12.06268 -11.85119 -11.75630 -11.60683 -11.46471 -11.28491 -10.72777 -10.57511 -10.21731 -9.29728 -8.99098 -8.65509 -8.17547 -5.50274 0.07980 0.17801 0.42528 1.06972 1.28249 1.42413 1.50757 1.81058 1.88386 2.10769 2.30228 2.40184 3.04052 3.29613 3.55992 3.73054 3.82082 3.91651 4.01390 4.16611 4.27718 4.40885 4.44955 4.58374 4.63296 4.64901 4.77085 4.81723 4.88083 4.96161 5.03657 5.11490 5.13280 5.19656 5.31646 5.39529 5.42820 5.63547 5.85047 6.11065 6.12337 6.40608 6.88876 6.99857 7.59516 7.99715 9.02171 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.002505 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.943036 B =11173.878676 C =11482.809690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.264 1.264 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.160 3.840 13 N -0.708 5.708 14 C 0.590 3.410 15 O -0.561 6.561 16 C -0.017 4.017 17 C -0.082 4.082 18 C -0.182 4.182 19 C -0.087 4.087 20 C -0.212 4.212 21 S 0.156 5.844 22 C -0.021 4.021 23 N -0.516 5.516 24 H 0.432 0.568 25 C -0.129 4.129 26 C 0.147 3.853 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.201 0.799 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.530 -11.048 -19.356 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.344 5.344 10 C -0.005 4.005 11 C -0.167 4.167 12 C 0.056 3.944 13 N -0.358 5.358 14 C 0.377 3.623 15 O -0.440 6.440 16 C -0.130 4.130 17 C -0.110 4.110 18 C -0.195 4.195 19 C -0.117 4.117 20 C -0.346 4.346 21 S 0.409 5.591 22 C -0.250 4.250 23 N -0.121 5.121 24 H 0.273 0.727 25 C -0.169 4.169 26 C 0.021 3.979 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.244 0.756 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.218 0.782 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.772 -10.886 -19.825 30.708 hybrid contribution -0.086 1.076 1.293 1.684 sum 20.686 -9.810 -18.532 29.455 Atomic orbital electron populations 1.69957 1.07380 1.27265 1.55563 1.25892 0.95825 1.00866 1.00260 0.85954 0.78618 0.80266 0.77859 1.19456 1.24112 1.18895 1.18850 0.86580 0.93611 1.38798 0.92948 1.44509 1.07782 1.34492 1.47580 1.21377 0.96974 0.92055 0.90079 1.22173 0.97465 0.98756 0.98346 1.20769 0.93930 0.92691 0.86989 1.45892 1.14896 1.57778 1.17212 1.17141 0.81228 0.77930 0.85981 1.90859 1.64925 1.59353 1.28838 1.19799 0.96048 1.10763 0.86385 1.20919 0.94802 0.98566 0.96752 1.19728 0.95449 1.08915 0.95406 1.20557 0.99469 0.98380 0.93322 1.25316 0.99264 1.09210 1.00812 1.83959 1.13743 1.58076 1.03324 1.24008 0.94473 1.06209 1.00351 1.41313 1.15110 1.46568 1.09110 0.72697 1.22216 0.99334 0.97946 0.97412 1.21010 0.91851 0.90714 0.94292 0.92894 0.94874 0.92264 0.89095 0.90757 0.90613 0.75558 0.82664 0.81916 0.78192 0.91823 0.91492 0.95075 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.39 13.97 21.65 0.30 -59.09 16 2 C -0.03 -1.94 5.23 84.86 0.44 -1.49 16 3 Si 0.94 45.78 24.35 68.60 1.67 47.45 16 4 H -0.27 -11.99 6.62 99.48 0.66 -11.34 16 5 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.26 -12.44 6.63 99.48 0.66 -11.78 16 7 C -0.25 -13.94 10.03 84.03 0.84 -13.10 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -28.54 2.77 -699.11 -1.94 -30.48 16 10 C 0.12 4.84 4.20 86.36 0.36 5.21 16 11 C -0.13 -3.81 5.55 30.67 0.17 -3.64 16 12 C 0.16 4.65 2.42 45.02 0.11 4.76 16 13 N -0.71 -16.16 5.07 -446.52 -2.27 -18.43 16 14 C 0.59 15.55 7.74 86.40 0.67 16.22 16 15 O -0.56 -19.14 16.51 -4.41 -0.07 -19.21 16 16 C -0.02 -0.37 6.97 39.81 0.28 -0.09 16 17 C -0.08 -1.85 10.58 22.76 0.24 -1.61 16 18 C -0.18 -3.58 6.80 -20.41 -0.14 -3.72 16 19 C -0.09 -1.22 10.42 23.40 0.24 -0.97 16 20 C -0.21 -2.23 11.03 67.05 0.74 -1.49 16 21 S 0.16 1.92 23.24 -56.49 -1.31 0.61 16 22 C -0.02 -0.38 8.41 83.80 0.70 0.33 16 23 N -0.52 -8.72 6.08 -179.04 -1.09 -9.81 16 24 H 0.43 4.74 8.14 -92.71 -0.75 3.99 16 25 C -0.13 -4.15 5.65 30.68 0.17 -3.97 16 26 C 0.15 5.73 6.52 86.36 0.56 6.30 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.03 1.31 7.07 -2.38 -0.02 1.30 16 29 H 0.06 2.61 4.50 -2.39 -0.01 2.60 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.45 7.58 -2.39 -0.02 2.44 16 33 H 0.41 6.64 7.67 -92.71 -0.71 5.93 16 34 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 Total: -1.00 -72.61 338.05 0.23 -72.37 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -0.47 Total: 13.85 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.40 Total: 2.73 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.99 Total: -117.80 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.07 Total: -19.21 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.31 Total: 0.61 kcal Total: -72.61 0.23 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003404594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.992 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds