Wall clock time and date at job start Tue Mar 31 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48492 * 109.47395 * 272.95268 * 3 2 1 5 5 H 1.48498 * 109.47213 * 32.95778 * 3 2 1 6 6 H 1.48507 * 109.47217 * 152.95343 * 3 2 1 7 7 C 1.38812 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00208 * 339.34634 * 7 2 1 9 9 N 1.36941 * 120.00256 * 159.34036 * 7 2 1 10 10 C 1.46924 * 120.62943 * 332.63144 * 9 7 2 11 11 C 1.53191 * 108.77565 * 233.60688 * 10 9 7 12 12 C 1.53047 * 109.30802 * 305.36286 * 11 10 9 13 13 C 1.53039 * 109.53630 * 61.36808 * 12 11 10 14 14 H 1.09003 * 109.49898 * 58.61950 * 13 12 11 15 15 N 1.46505 * 109.49645 * 178.67896 * 13 12 11 16 16 C 1.34770 * 120.00117 * 204.65605 * 15 13 12 17 17 O 1.21724 * 120.00088 * 0.27999 * 16 15 13 18 18 C 1.46500 * 119.99774 * 180.27510 * 16 15 13 19 19 C 1.36113 * 125.70779 * 180.02562 * 18 16 15 20 20 C 1.42231 * 107.62648 * 179.97438 * 19 18 16 21 21 C 1.45584 * 140.78353 * 179.97438 * 20 19 18 22 22 C 1.31804 * 114.63918 * 180.02562 * 21 20 19 23 23 S 1.75359 * 111.24207 * 0.02562 * 22 21 20 24 24 C 1.38179 * 106.98994 * 0.02562 * 20 19 18 25 25 N 1.37455 * 108.17048 * 359.77293 * 24 20 19 26 26 H 0.96998 * 125.68641 * 180.22847 * 25 24 20 27 27 C 1.46930 * 120.60411 * 152.64541 * 9 7 2 28 28 H 0.96993 * 120.00377 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58793 * 113.81612 * 10 9 7 30 30 H 1.09001 * 109.70350 * 353.45931 * 10 9 7 31 31 H 1.08997 * 109.50093 * 185.41587 * 11 10 9 32 32 H 1.09000 * 109.52500 * 65.32583 * 11 10 9 33 33 H 1.08998 * 109.46268 * 301.34268 * 12 11 10 34 34 H 1.09006 * 109.45697 * 181.38335 * 12 11 10 35 35 H 0.97002 * 119.99474 * 24.93285 * 15 13 12 36 36 H 1.08003 * 126.18851 * 359.96511 * 19 18 16 37 37 H 1.08002 * 122.67996 * 0.05037 * 21 20 19 38 38 H 1.08002 * 124.38282 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.61938 * 6.62749 * 27 9 7 40 40 H 1.09003 * 109.56303 * 246.19249 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4352 2.0824 -1.3981 5 1 1.4803 2.6337 0.7617 6 1 3.5776 1.4229 0.6367 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3290 9 7 3.3136 -1.2402 -0.4190 10 6 3.8172 -0.2585 -1.3891 11 6 4.4615 -1.0078 -2.5596 12 6 5.5283 -1.9647 -2.0221 13 6 4.8745 -2.9903 -1.0932 14 1 4.1081 -3.5398 -1.6399 15 7 5.8911 -3.9249 -0.6041 16 6 5.5330 -5.1606 -0.2025 17 8 4.3656 -5.5018 -0.2509 18 6 6.5489 -6.0930 0.2923 19 6 6.3182 -7.3628 0.7249 20 6 7.5680 -7.9184 1.1153 21 6 8.1384 -9.1456 1.6521 22 6 9.4434 -9.1114 1.8340 23 16 10.1100 -7.5593 1.3630 24 6 8.5265 -6.9465 0.9012 25 7 7.9015 -5.8326 0.3933 26 1 8.3374 -5.0014 0.1483 27 6 4.2343 -2.2639 0.0939 28 1 -0.4850 0.8400 0.0004 29 1 4.5599 0.3801 -0.9108 30 1 2.9922 0.3522 -1.7561 31 1 4.9241 -0.2922 -3.2394 32 1 3.6989 -1.5756 -3.0927 33 1 6.2777 -1.3991 -1.4686 34 1 6.0054 -2.4813 -2.8550 35 1 6.8215 -3.6530 -0.5656 36 1 5.3596 -7.8587 0.7648 37 1 7.5401 -10.0148 1.8823 38 1 10.0266 -9.9326 2.2237 39 1 3.6832 -2.9785 0.7054 40 1 5.0108 -1.7890 0.6936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008116946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:07 Heat of formation + Delta-G solvation = 62.052398 kcal Electronic energy + Delta-G solvation = -23839.783074 eV Core-core repulsion = 20361.622102 eV Total energy + Delta-G solvation = -3478.160972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.52719 -39.46891 -37.61956 -35.61031 -34.57495 -32.57261 -30.87964 -30.70028 -29.88539 -28.22198 -25.35809 -23.97727 -23.21129 -22.07782 -21.81255 -20.31825 -20.03854 -19.41556 -19.24006 -16.92792 -16.81831 -15.89258 -15.49284 -15.33296 -15.24456 -14.82723 -14.54451 -14.18771 -13.97765 -13.76664 -13.61217 -13.26735 -13.01428 -12.90827 -12.41305 -12.14528 -12.11541 -11.91986 -11.57986 -11.23076 -11.12263 -10.96962 -10.82149 -10.21847 -10.16688 -9.95270 -9.76477 -9.73912 -9.49061 -9.14183 -8.59917 -8.52978 -7.93876 -7.00096 -5.93754 -3.30870 0.77808 1.05064 1.20460 1.68812 2.66771 2.82799 3.05976 3.29967 3.34825 3.46969 3.49452 4.39908 4.52324 4.61900 4.76797 4.96803 5.07031 5.17437 5.20750 5.33389 5.37180 5.46378 5.49649 5.74309 5.83307 5.86375 5.91257 5.97203 6.12290 6.17679 6.25350 6.35422 6.38604 6.45965 6.56123 6.60793 6.70417 6.84027 6.89557 7.47810 7.95267 8.16503 8.34771 8.94042 9.71715 10.06648 11.22138 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002659 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.284121 B =10525.890108 C =10879.212498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.260 4.260 8 H 0.088 0.912 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.095 0.905 15 N -0.721 5.721 16 C 0.583 3.417 17 O -0.512 6.512 18 C -0.001 4.001 19 C -0.071 4.071 20 C -0.162 4.162 21 C -0.068 4.068 22 C -0.224 4.224 23 S 0.127 5.873 24 C -0.011 4.011 25 N -0.526 5.526 26 H 0.419 0.581 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.389 0.611 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.069 0.931 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.279 -14.315 -0.181 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.113 0.887 15 N -0.372 5.372 16 C 0.369 3.631 17 O -0.386 6.386 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.357 4.357 23 S 0.381 5.619 24 C -0.240 4.240 25 N -0.129 5.129 26 H 0.258 0.742 27 C 0.017 3.983 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.088 0.912 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 23.638 -13.731 -0.255 27.338 hybrid contribution -0.167 0.995 -0.053 1.010 sum 23.471 -12.736 -0.308 26.705 Atomic orbital electron populations 1.69839 1.05699 1.26524 1.52851 1.25267 0.95224 0.97497 0.99517 0.86950 0.79992 0.84754 0.76939 1.21616 1.23140 1.19695 1.18960 0.84746 0.94953 1.40151 0.89478 1.44285 1.08743 1.32623 1.46777 1.21405 0.97473 0.92102 0.89431 1.22001 0.97808 0.98314 0.99020 1.21687 0.98466 0.96988 0.98287 1.21794 0.89784 0.89314 0.97092 0.88711 1.46015 1.11217 1.13625 1.66301 1.16951 0.87154 0.81043 0.77984 1.90936 1.17289 1.76487 1.53892 1.20217 0.81855 0.97392 1.11976 1.20784 0.97165 0.92005 0.99868 1.19394 0.93499 0.94194 1.10400 1.20354 0.93953 0.96706 0.98807 1.24853 0.98303 1.00950 1.11641 1.83901 1.00894 1.08151 1.69002 1.23550 0.99212 0.92163 1.09058 1.41410 1.05864 1.12752 1.52900 0.74239 1.21218 0.92753 0.91406 0.92927 0.92738 0.95666 0.90662 0.92157 0.91255 0.92147 0.92387 0.77861 0.82399 0.83677 0.81274 0.91234 0.96040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.13 13.97 55.49 0.78 -27.36 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.36 24.35 -169.99 -4.14 18.22 16 4 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.73 6.63 56.52 0.37 -6.36 16 7 C -0.26 -7.42 10.03 -15.06 -0.15 -7.57 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 9 N -0.60 -14.37 2.77 -172.31 -0.48 -14.85 16 10 C 0.12 2.58 4.20 -3.71 -0.02 2.56 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.12 -1.63 5.35 -26.69 -0.14 -1.77 16 13 C 0.13 2.05 2.60 -67.81 -0.18 1.87 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 N -0.72 -9.37 5.08 -55.05 -0.28 -9.65 16 16 C 0.58 8.70 7.74 -12.94 -0.10 8.60 16 17 O -0.51 -9.86 16.51 5.17 0.09 -9.78 16 18 C 0.00 -0.02 6.97 -82.47 -0.57 -0.59 16 19 C -0.07 -0.88 10.58 -38.81 -0.41 -1.29 16 20 C -0.16 -1.81 6.80 -105.46 -0.72 -2.53 16 21 C -0.07 -0.59 10.42 -38.55 -0.40 -0.99 16 22 C -0.22 -1.63 11.03 28.84 0.32 -1.31 16 23 S 0.13 0.99 23.24 -107.50 -2.50 -1.51 16 24 C -0.01 -0.11 8.41 -15.05 -0.13 -0.24 16 25 N -0.53 -5.08 6.08 -7.94 -0.05 -5.12 16 26 H 0.42 2.76 8.14 -40.82 -0.33 2.43 16 27 C 0.14 2.92 6.09 -3.71 -0.02 2.90 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 30 H 0.08 1.77 4.49 -51.93 -0.23 1.53 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 3.61 7.67 -40.82 -0.31 3.30 16 36 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -34.34 338.06 -9.31 -43.65 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.05 Total: 3.42 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.77 Total: -2.11 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.03 Total: -56.98 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.34 -9.31 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008116946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.703 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds