Wall clock time and date at job start Tue Mar 31 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48492 * 109.47395 * 272.95268 * 3 2 1 5 5 H 1.48498 * 109.47213 * 32.95778 * 3 2 1 6 6 H 1.48507 * 109.47217 * 152.95343 * 3 2 1 7 7 C 1.38812 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00208 * 339.34634 * 7 2 1 9 9 N 1.36941 * 120.00256 * 159.34036 * 7 2 1 10 10 C 1.46924 * 120.62943 * 332.63144 * 9 7 2 11 11 C 1.53191 * 108.77565 * 233.60688 * 10 9 7 12 12 C 1.53047 * 109.30802 * 305.36286 * 11 10 9 13 13 C 1.53039 * 109.53630 * 61.36808 * 12 11 10 14 14 H 1.09003 * 109.49898 * 58.61950 * 13 12 11 15 15 N 1.46505 * 109.49645 * 178.67896 * 13 12 11 16 16 C 1.34770 * 120.00117 * 204.65605 * 15 13 12 17 17 O 1.21724 * 120.00088 * 0.27999 * 16 15 13 18 18 C 1.46500 * 119.99774 * 180.27510 * 16 15 13 19 19 C 1.36113 * 125.70779 * 180.02562 * 18 16 15 20 20 C 1.42231 * 107.62648 * 179.97438 * 19 18 16 21 21 C 1.45584 * 140.78353 * 179.97438 * 20 19 18 22 22 C 1.31804 * 114.63918 * 180.02562 * 21 20 19 23 23 S 1.75359 * 111.24207 * 0.02562 * 22 21 20 24 24 C 1.38179 * 106.98994 * 0.02562 * 20 19 18 25 25 N 1.37455 * 108.17048 * 359.77293 * 24 20 19 26 26 H 0.96998 * 125.68641 * 180.22847 * 25 24 20 27 27 C 1.46930 * 120.60411 * 152.64541 * 9 7 2 28 28 H 0.96993 * 120.00377 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58793 * 113.81612 * 10 9 7 30 30 H 1.09001 * 109.70350 * 353.45931 * 10 9 7 31 31 H 1.08997 * 109.50093 * 185.41587 * 11 10 9 32 32 H 1.09000 * 109.52500 * 65.32583 * 11 10 9 33 33 H 1.08998 * 109.46268 * 301.34268 * 12 11 10 34 34 H 1.09006 * 109.45697 * 181.38335 * 12 11 10 35 35 H 0.97002 * 119.99474 * 24.93285 * 15 13 12 36 36 H 1.08003 * 126.18851 * 359.96511 * 19 18 16 37 37 H 1.08002 * 122.67996 * 0.05037 * 21 20 19 38 38 H 1.08002 * 124.38282 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.61938 * 6.62749 * 27 9 7 40 40 H 1.09003 * 109.56303 * 246.19249 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4352 2.0824 -1.3981 5 1 1.4803 2.6337 0.7617 6 1 3.5776 1.4229 0.6367 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3290 9 7 3.3136 -1.2402 -0.4190 10 6 3.8172 -0.2585 -1.3891 11 6 4.4615 -1.0078 -2.5596 12 6 5.5283 -1.9647 -2.0221 13 6 4.8745 -2.9903 -1.0932 14 1 4.1081 -3.5398 -1.6399 15 7 5.8911 -3.9249 -0.6041 16 6 5.5330 -5.1606 -0.2025 17 8 4.3656 -5.5018 -0.2509 18 6 6.5489 -6.0930 0.2923 19 6 6.3182 -7.3628 0.7249 20 6 7.5680 -7.9184 1.1153 21 6 8.1384 -9.1456 1.6521 22 6 9.4434 -9.1114 1.8340 23 16 10.1100 -7.5593 1.3630 24 6 8.5265 -6.9465 0.9012 25 7 7.9015 -5.8326 0.3933 26 1 8.3374 -5.0014 0.1483 27 6 4.2343 -2.2639 0.0939 28 1 -0.4850 0.8400 0.0004 29 1 4.5599 0.3801 -0.9108 30 1 2.9922 0.3522 -1.7561 31 1 4.9241 -0.2922 -3.2394 32 1 3.6989 -1.5756 -3.0927 33 1 6.2777 -1.3991 -1.4686 34 1 6.0054 -2.4813 -2.8550 35 1 6.8215 -3.6530 -0.5656 36 1 5.3596 -7.8587 0.7648 37 1 7.5401 -10.0148 1.8823 38 1 10.0266 -9.9326 2.2237 39 1 3.6832 -2.9785 0.7054 40 1 5.0108 -1.7890 0.6936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008116946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:07 Heat of formation + Delta-G solvation = 36.874855 kcal Electronic energy + Delta-G solvation = -23840.874854 eV Core-core repulsion = 20361.622102 eV Total energy + Delta-G solvation = -3479.252752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41554 -40.71308 -39.12290 -36.36774 -36.06415 -34.33698 -32.72610 -31.57808 -31.23212 -29.20689 -27.25009 -25.16140 -24.00172 -23.77765 -23.06974 -21.51074 -21.18355 -20.40904 -20.14449 -18.81508 -17.85287 -17.44429 -17.00660 -16.60223 -15.98126 -15.91247 -15.58184 -15.51183 -15.38507 -15.20523 -14.84239 -14.60947 -14.54807 -14.11505 -13.84339 -13.67826 -13.33933 -12.86298 -12.80191 -12.68000 -12.57745 -12.46774 -11.88491 -11.77098 -11.72568 -11.54636 -11.40495 -11.30220 -10.82397 -10.57894 -10.31605 -9.29916 -8.96551 -8.64192 -8.19329 -5.53736 0.07432 0.17120 0.42231 1.06459 1.28427 1.40588 1.50794 1.79826 1.86252 2.10959 2.29621 2.39499 3.02817 3.30710 3.60623 3.78361 3.82428 3.98854 4.00809 4.05489 4.28379 4.36379 4.44110 4.62380 4.62900 4.65406 4.76692 4.88685 4.95767 4.97964 5.03576 5.12723 5.16446 5.19979 5.27531 5.42207 5.47532 5.62351 5.82211 6.08589 6.14148 6.42170 6.86907 7.03959 7.57336 7.94611 9.01075 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002659 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.284121 B =10525.890108 C =10879.212498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.257 1.257 7 C -0.257 4.257 8 H 0.036 0.964 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.126 4.126 12 C -0.106 4.106 13 C 0.138 3.862 14 H 0.059 0.941 15 N -0.702 5.702 16 C 0.585 3.415 17 O -0.567 6.567 18 C -0.014 4.014 19 C -0.087 4.087 20 C -0.183 4.183 21 C -0.089 4.089 22 C -0.212 4.212 23 S 0.166 5.834 24 C -0.019 4.019 25 N -0.512 5.512 26 H 0.434 0.566 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.412 0.588 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.202 0.798 39 H 0.030 0.970 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.565 -13.703 -0.813 31.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.232 4.232 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.181 1.181 7 C -0.387 4.387 8 H 0.053 0.947 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.143 4.143 13 C 0.032 3.968 14 H 0.077 0.923 15 N -0.353 5.353 16 C 0.372 3.628 17 O -0.446 6.446 18 C -0.127 4.127 19 C -0.115 4.115 20 C -0.196 4.196 21 C -0.119 4.119 22 C -0.346 4.346 23 S 0.419 5.581 24 C -0.248 4.248 25 N -0.117 5.117 26 H 0.276 0.724 27 C 0.018 3.982 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.249 0.751 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.219 0.781 39 H 0.049 0.951 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 29.038 -13.107 -0.912 31.872 hybrid contribution -1.759 0.608 0.209 1.873 sum 27.280 -12.499 -0.703 30.015 Atomic orbital electron populations 1.69996 1.07744 1.27495 1.55253 1.26012 0.95949 1.01508 0.99764 0.85723 0.78623 0.78958 0.77972 1.19171 1.24022 1.18073 1.18780 0.86978 0.93351 1.39591 0.94650 1.44349 1.07559 1.34179 1.48071 1.21569 0.97205 0.91993 0.90445 1.21926 0.98092 0.99034 0.97524 1.21659 0.97903 0.95892 0.98883 1.21365 0.90154 0.89754 0.95540 0.92295 1.45689 1.11795 1.12445 1.65359 1.17264 0.86854 0.81599 0.77053 1.90913 1.19804 1.77619 1.56222 1.19690 0.82687 0.96884 1.13441 1.20918 0.97810 0.92507 1.00276 1.19694 0.93050 0.95789 1.11050 1.20544 0.94831 0.96603 0.99960 1.25320 0.97978 1.01542 1.09720 1.83861 0.98491 1.07757 1.67998 1.24014 1.00712 0.91840 1.08245 1.41228 1.04649 1.13400 1.52424 0.72445 1.21280 0.92247 0.90266 0.94427 0.92782 0.93702 0.93160 0.88206 0.93204 0.89210 0.88933 0.75057 0.83302 0.82180 0.78113 0.95104 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.46 13.97 21.65 0.30 -62.15 16 2 C -0.04 -2.28 5.23 84.86 0.44 -1.84 16 3 Si 0.96 46.72 24.35 68.60 1.67 48.39 16 4 H -0.27 -11.87 6.62 99.48 0.66 -11.22 16 5 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 6 H -0.26 -11.72 6.63 99.48 0.66 -11.06 16 7 C -0.26 -15.52 10.03 84.03 0.84 -14.67 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 9 N -0.62 -29.92 2.77 -699.07 -1.94 -31.85 16 10 C 0.11 4.53 4.20 86.36 0.36 4.89 16 11 C -0.13 -3.81 6.08 30.67 0.19 -3.62 16 12 C -0.11 -2.53 5.35 30.62 0.16 -2.37 16 13 C 0.14 4.42 2.60 45.07 0.12 4.54 16 14 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 15 N -0.70 -17.35 5.08 -446.28 -2.27 -19.62 16 16 C 0.58 17.87 7.74 86.40 0.67 18.54 16 17 O -0.57 -23.50 16.51 -4.43 -0.07 -23.58 16 18 C -0.01 -0.34 6.97 39.81 0.28 -0.06 16 19 C -0.09 -2.23 10.58 22.77 0.24 -1.99 16 20 C -0.18 -3.94 6.80 -20.41 -0.14 -4.08 16 21 C -0.09 -1.39 10.42 23.40 0.24 -1.14 16 22 C -0.21 -2.38 11.03 67.05 0.74 -1.64 16 23 S 0.17 2.03 23.24 -56.49 -1.31 0.72 16 24 C -0.02 -0.35 8.41 83.80 0.70 0.36 16 25 N -0.51 -8.96 6.08 -179.04 -1.09 -10.05 16 26 H 0.43 4.47 8.14 -92.71 -0.75 3.71 16 27 C 0.14 5.91 6.09 86.36 0.53 6.44 16 28 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 29 H 0.05 1.66 7.08 -2.39 -0.02 1.65 16 30 H 0.05 2.28 4.49 -2.39 -0.01 2.27 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.41 6.33 7.67 -92.71 -0.71 5.62 16 36 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -81.72 338.06 0.21 -81.51 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.47 Total: 13.28 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.38 Total: 3.35 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -4.99 Total: -123.68 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.31 Total: 0.72 kcal Total: -81.72 0.21 -81.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008116946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.386 kcal (2) G-P(sol) polarization free energy of solvation -81.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds