Wall clock time and date at job start Tue Mar 31 2020 12:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47406 * 272.93129 * 3 2 1 5 5 H 1.48504 * 109.47139 * 32.93270 * 3 2 1 6 6 H 1.48494 * 109.47265 * 152.92998 * 3 2 1 7 7 C 1.38809 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99509 * 339.36644 * 7 2 1 9 9 N 1.36934 * 120.00302 * 159.37131 * 7 2 1 10 10 C 1.46920 * 120.62867 * 332.60590 * 9 7 2 11 11 C 1.53169 * 108.76394 * 233.63260 * 10 9 7 12 12 C 1.53040 * 109.32747 * 305.35342 * 11 10 9 13 13 C 1.53032 * 109.52632 * 61.37144 * 12 11 10 14 14 H 1.08998 * 109.49697 * 58.59972 * 13 12 11 15 15 N 1.46501 * 109.49843 * 178.69149 * 13 12 11 16 16 C 1.34776 * 120.00089 * 205.00391 * 15 13 12 17 17 O 1.21728 * 120.00194 * 359.97438 * 16 15 13 18 18 C 1.46458 * 120.00083 * 179.97438 * 16 15 13 19 19 C 1.37467 * 125.80740 * 179.69355 * 18 16 15 20 20 C 1.40658 * 107.55304 * 179.84161 * 19 18 16 21 21 S 1.76023 * 142.39237 * 180.02562 * 20 19 18 22 22 C 1.75596 * 91.31002 * 180.37649 * 21 20 19 23 23 C 1.32767 * 110.47267 * 359.97438 * 22 21 20 24 24 C 1.38241 * 108.03327 * 0.42009 * 20 19 18 25 25 N 1.37914 * 125.80337 * 359.97438 * 18 16 15 26 26 H 0.97003 * 125.69075 * 0.04671 * 25 18 16 27 27 C 1.46924 * 120.63094 * 152.62364 * 9 7 2 28 28 H 0.97003 * 120.00155 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.59216 * 353.41259 * 10 9 7 30 30 H 1.08997 * 109.59165 * 113.84343 * 10 9 7 31 31 H 1.09008 * 109.47730 * 185.40840 * 11 10 9 32 32 H 1.08997 * 109.50673 * 65.31812 * 11 10 9 33 33 H 1.09004 * 109.45828 * 301.35964 * 12 11 10 34 34 H 1.08997 * 109.45893 * 181.39249 * 12 11 10 35 35 H 0.97004 * 120.00171 * 24.99996 * 15 13 12 36 36 H 1.08001 * 126.22145 * 359.97438 * 19 18 16 37 37 H 1.07992 * 124.76351 * 179.97438 * 22 21 20 38 38 H 1.08001 * 122.15994 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.58870 * 6.58664 * 27 9 7 40 40 H 1.09002 * 109.59198 * 246.15567 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4800 2.6340 0.7612 6 1 3.5773 1.4231 0.6371 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3137 -1.2399 -0.4183 10 6 3.8177 -0.2583 -1.3884 11 6 4.4619 -1.0079 -2.5585 12 6 5.5286 -1.9648 -2.0212 13 6 4.8746 -2.9902 -1.0923 14 1 4.1079 -3.5393 -1.6389 15 7 5.8911 -3.9249 -0.6030 16 6 5.5337 -5.1629 -0.2079 17 8 4.3663 -5.5043 -0.2571 18 6 6.5499 -6.0975 0.2808 19 6 6.3192 -7.3805 0.7173 20 6 7.5583 -7.9300 1.0931 21 16 8.2983 -9.3936 1.7322 22 6 9.8896 -8.6520 1.6986 23 6 9.8132 -7.4095 1.2370 24 6 8.5317 -6.9697 0.8897 25 7 7.9004 -5.8383 0.3863 26 1 8.3368 -5.0050 0.1496 27 6 4.2349 -2.2632 0.0946 28 1 -0.4850 0.8401 0.0004 29 1 2.9913 0.3505 -1.7552 30 1 4.5603 0.3801 -0.9101 31 1 4.9245 -0.2921 -3.2382 32 1 3.6991 -1.5756 -3.0913 33 1 6.2780 -1.3992 -1.4675 34 1 6.0056 -2.4814 -2.8540 35 1 6.8213 -3.6529 -0.5634 36 1 5.3611 -7.8770 0.7615 37 1 10.8023 -9.1382 2.0098 38 1 10.6841 -6.7786 1.1375 39 1 3.6837 -2.9773 0.7065 40 1 5.0116 -1.7883 0.6940 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009086703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:48 Heat of formation + Delta-G solvation = 61.388604 kcal Electronic energy + Delta-G solvation = -23856.158825 eV Core-core repulsion = 20377.969069 eV Total energy + Delta-G solvation = -3478.189756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.55569 -39.51830 -37.64647 -35.53604 -34.60276 -32.59359 -31.18398 -30.87878 -29.78517 -28.05867 -25.35980 -24.06941 -23.16077 -22.07102 -21.80600 -20.66146 -20.16051 -19.56749 -18.72617 -16.88232 -16.64676 -15.89499 -15.70772 -15.47395 -15.30566 -14.56925 -14.48134 -14.17688 -13.98244 -13.82274 -13.67265 -13.27244 -13.09037 -12.92191 -12.41799 -12.14753 -12.12985 -11.85186 -11.58118 -11.22948 -11.10505 -10.97027 -10.82332 -10.22118 -10.17279 -9.98597 -9.95535 -9.76727 -9.49225 -9.14980 -8.58532 -8.32863 -7.92783 -7.00242 -5.93826 -3.31001 0.51100 1.27585 1.76817 1.80957 2.48005 2.57346 3.09665 3.29457 3.30066 3.46821 3.49307 4.46234 4.52124 4.62981 4.70715 4.96643 5.05544 5.07816 5.20495 5.24015 5.36097 5.46087 5.48382 5.67911 5.72116 5.74191 5.86189 5.95521 6.11743 6.20127 6.25098 6.32768 6.36758 6.41411 6.56528 6.60623 6.70292 6.86684 7.00943 7.47499 7.95148 8.15568 8.34722 8.93964 9.71603 10.06550 11.22034 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.002636 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.162854 B =10620.454239 C =11003.438545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.260 4.260 8 H 0.088 0.912 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.095 0.905 15 N -0.720 5.720 16 C 0.582 3.418 17 O -0.510 6.510 18 C 0.016 3.984 19 C -0.074 4.074 20 C -0.217 4.217 21 S 0.131 5.869 22 C -0.191 4.191 23 C -0.114 4.114 24 C 0.061 3.939 25 N -0.542 5.542 26 H 0.418 0.582 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.389 0.611 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.140 0.860 39 H 0.069 0.931 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.609 -13.975 -0.282 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.113 0.887 15 N -0.371 5.371 16 C 0.367 3.633 17 O -0.385 6.385 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.338 4.338 21 S 0.390 5.610 22 C -0.327 4.327 23 C -0.148 4.148 24 C -0.057 4.057 25 N -0.145 5.145 26 H 0.256 0.744 27 C 0.017 3.983 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.222 0.778 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 22.061 -15.363 0.082 26.883 hybrid contribution 1.794 3.007 -0.493 3.536 sum 23.856 -12.355 -0.411 26.868 Atomic orbital electron populations 1.69842 1.05702 1.26521 1.52842 1.25269 0.95224 0.97498 0.99512 0.86951 0.79990 0.84753 0.76942 1.21612 1.23140 1.19693 1.18955 0.84727 0.94955 1.40181 0.89477 1.44283 1.08718 1.32640 1.46785 1.21409 0.97473 0.92117 0.89435 1.21998 0.97811 0.98311 0.99029 1.21685 0.98467 0.96986 0.98286 1.21796 0.89790 0.89311 0.97101 0.88693 1.46009 1.11289 1.13412 1.66370 1.16941 0.87167 0.81072 0.78102 1.90939 1.17325 1.76591 1.53620 1.20492 0.82162 0.96888 1.10351 1.20456 0.96442 0.91992 1.01565 1.22696 0.97963 0.99012 1.14079 1.83961 0.97791 1.12056 1.67163 1.25229 1.01744 0.98154 1.07615 1.18885 0.94580 0.96674 1.04623 1.18341 0.93503 0.87768 1.06094 1.41957 1.05965 1.12977 1.53590 0.74385 1.21215 0.92757 0.91416 0.92923 0.92737 0.90652 0.95644 0.92158 0.91253 0.92139 0.92383 0.77804 0.82447 0.81089 0.84221 0.91240 0.96023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.97 55.49 0.78 -27.34 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.32 24.34 -169.99 -4.14 18.18 16 4 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.72 6.63 56.52 0.37 -6.34 16 7 C -0.26 -7.42 10.03 -15.06 -0.15 -7.57 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.60 -14.34 2.77 -172.34 -0.48 -14.82 16 10 C 0.12 2.57 4.20 -3.73 -0.02 2.55 16 11 C -0.13 -2.19 6.08 -26.62 -0.16 -2.35 16 12 C -0.12 -1.62 5.36 -26.69 -0.14 -1.76 16 13 C 0.12 2.04 2.60 -67.81 -0.18 1.86 16 14 H 0.10 1.82 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -9.28 5.08 -55.07 -0.28 -9.56 16 16 C 0.58 8.65 7.75 -12.95 -0.10 8.55 16 17 O -0.51 -9.85 16.52 5.16 0.09 -9.77 16 18 C 0.02 0.20 7.01 -82.10 -0.58 -0.38 16 19 C -0.07 -0.94 10.60 -38.95 -0.41 -1.36 16 20 C -0.22 -2.47 7.26 -38.67 -0.28 -2.76 16 21 S 0.13 1.15 23.31 -107.50 -2.51 -1.36 16 22 C -0.19 -1.34 11.13 28.86 0.32 -1.02 16 23 C -0.11 -0.88 10.16 -40.84 -0.42 -1.29 16 24 C 0.06 0.62 7.67 -84.00 -0.64 -0.03 16 25 N -0.54 -5.10 6.14 -7.34 -0.05 -5.14 16 26 H 0.42 2.58 8.14 -40.82 -0.33 2.25 16 27 C 0.14 2.91 6.09 -3.71 -0.02 2.88 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.08 1.77 4.49 -51.93 -0.23 1.53 16 30 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.39 3.55 7.68 -40.82 -0.31 3.23 16 36 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -34.40 337.82 -9.41 -43.81 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.05 Total: 2.95 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.87 Total: -2.05 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.03 Total: -56.86 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.40 -9.41 -43.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009086703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.200 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds