Wall clock time and date at job start Tue Mar 31 2020 12:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48500 * 109.46887 * 269.99533 * 3 2 1 5 5 H 1.48494 * 109.47288 * 29.99546 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99567 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34775 * 120.00014 * 184.66535 * 16 15 13 18 18 O 1.21727 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.46412 * 119.99593 * 179.97438 * 17 16 15 20 20 C 1.35785 * 124.95668 * 179.97438 * 19 17 16 21 21 C 1.38874 * 115.18363 * 180.02562 * 20 19 17 22 22 N 1.39747 * 139.91194 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.63341 * 359.97438 * 22 21 20 24 24 C 1.36215 * 108.73165 * 179.97438 * 22 21 20 25 25 C 1.34508 * 109.29701 * 0.02562 * 24 22 21 26 26 C 1.38236 * 113.39490 * 359.97438 * 21 20 19 27 27 S 1.75619 * 124.96185 * 359.69551 * 19 17 16 28 28 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 30 30 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 31 31 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 32 32 H 1.09005 * 111.00681 * 204.97750 * 11 10 9 33 33 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 34 34 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 35 35 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 36 36 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 37 37 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 38 38 H 1.07993 * 122.40336 * 0.02562 * 20 19 17 39 39 H 1.08000 * 125.34815 * 179.97438 * 24 22 21 40 40 H 1.07997 * 126.07363 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7770 -5.2426 -3.1025 18 8 3.8098 -4.3739 -3.9545 19 6 4.4440 -6.5245 -3.3378 20 6 5.1256 -6.8514 -4.4658 21 6 5.6794 -8.1249 -4.4735 22 7 6.4364 -8.9566 -5.3031 23 1 6.7615 -8.7277 -6.1878 24 6 6.6425 -10.1416 -4.6639 25 6 6.0481 -10.1054 -3.4578 26 6 5.4329 -8.8376 -3.3150 27 16 4.4854 -7.8613 -2.1996 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4240 -1.8596 1.0680 30 1 -0.6981 -2.3869 -0.6198 31 1 0.0102 -4.1098 1.8179 32 1 -1.2713 -4.3835 0.5901 33 1 0.3282 -4.9729 -1.1115 34 1 1.1302 -5.6532 0.3421 35 1 1.6431 -3.6203 -2.4188 36 1 3.1763 -2.9305 -1.8343 37 1 3.1000 -5.7168 -1.2636 38 1 5.2295 -6.1700 -5.2971 39 1 7.1954 -10.9791 -5.0631 40 1 6.0423 -10.9010 -2.7275 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028283025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:16 Heat of formation + Delta-G solvation = 59.794763 kcal Electronic energy + Delta-G solvation = -23491.814292 eV Core-core repulsion = 20013.555422 eV Total energy + Delta-G solvation = -3478.258870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41654 -39.44386 -37.62003 -35.21333 -34.24164 -32.46592 -31.19108 -29.87089 -29.10036 -27.91957 -25.11202 -24.35230 -23.18485 -21.72860 -20.92706 -20.29872 -19.89832 -19.23549 -18.58284 -17.07014 -16.46688 -15.89687 -15.63723 -15.21540 -14.89938 -14.63541 -14.52503 -14.24638 -13.81981 -13.73381 -13.39010 -13.03512 -12.94633 -12.15690 -12.10550 -11.87254 -11.85063 -11.57224 -11.32464 -11.07444 -10.92429 -10.78422 -10.20194 -10.10754 -9.97923 -9.90834 -9.84260 -9.75652 -9.66040 -8.76689 -8.57079 -8.30666 -7.85870 -6.83258 -5.75034 -3.11566 0.42190 1.28289 1.82462 2.22187 2.41194 2.71540 3.36535 3.40091 3.44473 3.47999 3.49238 4.49790 4.62525 4.64833 4.80375 5.11941 5.23297 5.34313 5.41423 5.50670 5.56215 5.63842 5.72463 5.81783 5.82887 6.05976 6.15355 6.24594 6.26277 6.47614 6.47827 6.55486 6.61002 6.70109 6.81017 7.06292 7.11364 7.53859 7.61975 7.71933 7.81188 8.26805 8.38828 9.19046 9.79471 10.46411 11.36700 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.002799 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.715941 B =10001.360617 C =10824.824303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.129 4.129 13 C 0.151 3.849 14 H 0.039 0.961 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.584 3.416 18 O -0.531 6.531 19 C -0.226 4.226 20 C -0.038 4.038 21 C 0.026 3.974 22 N -0.558 5.558 23 H 0.419 0.581 24 C 0.055 3.945 25 C -0.171 4.171 26 C -0.190 4.190 27 S 0.164 5.836 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.394 0.606 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -22.643 -6.622 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.167 4.167 13 C 0.042 3.958 14 H 0.057 0.943 15 C -0.015 4.015 16 N -0.365 5.365 17 C 0.368 3.632 18 O -0.410 6.410 19 C -0.347 4.347 20 C -0.073 4.073 21 C -0.088 4.088 22 N -0.159 5.159 23 H 0.257 0.743 24 C -0.079 4.079 25 C -0.201 4.201 26 C -0.312 4.312 27 S 0.426 5.574 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.719 -21.866 -5.863 24.636 hybrid contribution 1.237 0.782 -1.703 2.246 sum 10.956 -21.084 -7.567 24.937 Atomic orbital electron populations 1.69940 1.05007 1.25286 1.55987 1.24903 0.95689 0.97865 1.01450 0.86138 0.78705 0.83331 0.77716 1.21396 1.21664 1.20565 1.18997 0.90436 0.82169 1.44538 0.90594 1.44488 1.05859 1.00743 1.80161 1.21477 0.84629 0.90326 0.98921 1.23023 0.97436 0.99537 0.98655 1.22662 0.97091 0.97027 0.99906 1.21143 0.94510 0.88118 0.91983 0.94327 1.22326 0.96768 0.82891 0.99557 1.46010 1.54227 1.18914 1.17397 1.16872 0.78617 0.84965 0.82713 1.90849 1.61117 1.44585 1.44449 1.23902 1.10765 1.00080 0.99950 1.19243 0.96383 0.93086 0.98635 1.18007 1.04386 0.94030 0.92399 1.41906 1.44876 1.12170 1.16918 0.74303 1.21856 1.03080 0.89228 0.93732 1.20128 1.05411 0.96078 0.98480 1.23196 1.08779 1.00469 0.98778 1.83734 1.53215 1.04052 1.16358 0.93615 0.90756 0.95661 0.92273 0.92281 0.91742 0.92289 0.91654 0.90766 0.77255 0.83329 0.80560 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.54 55.49 0.58 -26.16 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.42 9.73 -15.06 -0.15 -6.57 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.59 -14.67 3.13 -162.57 -0.51 -15.18 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.71 7.10 -24.51 -0.17 -2.88 16 12 C -0.13 -2.16 6.07 -24.83 -0.15 -2.31 16 13 C 0.15 3.02 3.22 -66.96 -0.22 2.80 16 14 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.11 2.16 5.09 -4.04 -0.02 2.14 16 16 N -0.71 -11.59 5.40 -61.70 -0.33 -11.93 16 17 C 0.58 9.99 7.77 -12.97 -0.10 9.89 16 18 O -0.53 -11.09 16.77 5.16 0.09 -11.00 16 19 C -0.23 -3.16 6.38 -37.17 -0.24 -3.40 16 20 C -0.04 -0.48 9.88 -40.22 -0.40 -0.88 16 21 C 0.03 0.28 7.67 -84.01 -0.64 -0.36 16 22 N -0.56 -4.13 6.21 -10.90 -0.07 -4.20 16 23 H 0.42 1.82 8.96 -40.82 -0.37 1.45 16 24 C 0.05 0.34 11.85 -16.92 -0.20 0.14 16 25 C -0.17 -1.45 10.85 -39.61 -0.43 -1.88 16 26 C -0.19 -2.11 7.31 -38.29 -0.28 -2.39 16 27 S 0.16 1.86 22.29 -107.50 -2.40 -0.54 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.97 6.86 -51.93 -0.36 1.62 16 30 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 36 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 37 H 0.39 5.33 7.30 -40.82 -0.30 5.04 16 38 H 0.15 1.80 8.00 -52.49 -0.42 1.38 16 39 H 0.18 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -33.77 346.73 -10.71 -44.48 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.17 Total: 3.82 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.11 Total: -1.78 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.32 Total: -57.47 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.77 -10.71 -44.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028283025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.271 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds